Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003985

Physical Location & Seq

Genomic Coordinates Forward (+)

83312478 .. 83315540

Gene Structure 3063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00145340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1737 bp

ATGGACGTTCGCCGGCGACCCCCACTCCCTCCCCGCGCCTTCGGCGGCGAACCCATCAAGCAGCACCAGAGAAATCACCCCAAGGCCTCCGACGCGCTGCCGTTGCCGCTGTACTTGACCAACGGCTTGTTCTTCACGCTCTTCTTCACCGTCGCTTACTTCCTCCTCCACCGCTGGCGTGAGAAGATCCGCACCTCCATTCCCCTCCACGTCGTCACGCTCTCCGAGATCGCCGCCCTCTTCTCCCTCTTCGCCTCCGTCATCTACCTTCTCGGCTTCTTCGGCATTGACTTCGTCCAGTCCTTCGTCGCCCCCCGCCCTCCCCACGACCCCTGGAACGACGTCGTAAATGCGCGGCGCCCCCGAAAAGATGTCGTAAGGCCGCCACACCCTAGAAACGACGTCGTTAAGGGGTCGCAGTTAGTGCCGCAGTGCGAGAACCAGCGCTGCGGCACTAACTCTCCTCCTCCTTCTGTTTCGGTACGGCCCGAGCAGGAGGACGAGGAGATAATTAATTCCGTAGTGTCCGGAGCGATGCCGTCGCACACTCTGGAGTCGAATCTCGGGGACTGCCGGAGAGCCGCCGCCATACGGCGGGAGGCCCTGCAGCGAAGGACGAGTCGTTCGCTGGAGGGACTCCCCCTTGGAAGGCTTCGATTACGACTCTATACTCGGACAGTGCTGCGAGATGCCGATTGGATTCCGGTGGGAGTCGCCGGACCTCTGCTGCTCGATGGCGAGGAGCTCACTATCCCAATGGCGACCACCGAAGGCTGCCTCGTCGCCAGCACCAACCGAGGCTGCAAGGCCATTTGCGCTTCCGGTGGGGCCCACAGCGTCATTCTCAAGGACGGCATGACCAGAGCTCCGGTCGTGAGGTTCAACTCCGCCTTCAGAGCCGCCGAGGTCAAGTTCTTCCTGGAGGACCCGGAAAACTTCGATTCTGTTGCCATCGTTTTCAACAGATCTAGTAGATTTGCAAAGCTTCAGGAGATTAAATGCGCGGTTGCAGGCAAGAATCTGTTCATGAGGTTTACATGCAGCACTGGAGATGCGATGGGGATGAACATGGTCTCCAAAGGGGTCCAAAATGTGTTGGATTTTCTCCAGAGTGACTTCCCCGACATGGATGTTATCGGCATCTCCGGGAATTTCTGCTCAGACAAGAAACCGGCAGCGGTGAATTGGATAGAAGGGCGAGGCAAATCAGTAGTGTGCGAGACTGTGATCAATGAAGAAGTGGTGAGGAAGGTGCTGAAGACCAATGTAGCTGCCTTGGTGGAGCTCAACATGCTTAAAAACCTTACCGGGTCTGCAATGGCCGGTGCTCTTGGCGGGTTCAATGCCCACGCCAGCAACATTGTCAGCGCAGTGTACATAGCTACCGGCCAGGACCCTGCTCAGAATGTGGAGAGCTCTCACTGCATTACCATGATGGAGGCCATAAACGATGGAAAGGACCTACATGTCTCAGTCACCATGCCTTCCATTGAGGTGGGAACAGTTGGAGGTGGAACACAACTAGCATCACAGTCAGCCTGCCTGAACTTACTGGGAGTTAAGGGTGCCAGCAAGGACTCTCCTGGTTCAAACTCAAGGAAACTAGCCACCATTGTTGCAGGTTCTGTTCTAGCAGGAGAGCTCTCTCTCATGTCAGCCCTTGCAGCAGGTCAGCTAGTTAAAAGTCACATGAAATACAACAGGTCTAGTAAGGATGTGTCAAAACTTGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004420 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005778 GO:0005783 GO:0005789 GO:0006629 GO:0006694 GO:0006720 GO:0008150 GO:0008152 GO:0008202 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016491 GO:0016614 GO:0016616 GO:0031090 GO:0031903 GO:0031984 GO:0042175 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044438 GO:0044439 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071704 GO:0098588 GO:0098805 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

578

Amino Acids

62.59

Weight (kDa)

9.11

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG-CoA_red	PF00368	197 - 568	8.7e-135	Hydroxymethylglutaryl-coenzyme A reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003985)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76490
fragaria_vesca	FvH4_1g09980 FvH4_5g26180
malus_domestica	MD02G1108500.v1.1 MD02G1108700.v1.1 MD04G1238500.v1.1 MD08G1025200.v1.1 MD15G1227900.v1.1
prunus_persica	Prupe.7G187000_v2.0.a1 Prupe.7G187500_v2.0.a1
pyrus_communis	pycom02g08710 pycom02g08720 pycom15g20270
rosa_chinensis	RchiOBHm_Chr2g0096771 RchiOBHm_Chr7g0216871
rosa_laevigata	RLG00000002531 RLG00000016668
rosa_multiflora	Rmu_sc0000854.1_g000004 Rmu_sc0004291.1_g000010 Rmu_sc0030893.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145340 Rroxscaffold_3G00242800
rosa_rugosa	Rorug02G0060600 Rorug07G0164000.1
rosa_samantha	Rh2AG107800 Rh2BG110200 Rh2CG112100 Rh2DG111500 Rh7AG303400 Rh7BG295400 Rh7CG322100
rosa_wichuraiana	Rw2G008350 Rw7G025820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1466
AatII	GACGTC	2 cut(s)	345, 405
Acc36I	ACCTGC	2 cut(s)	1610, 1658
AccB1I	GGYRCC	2 cut(s)	357, 1565
AccII	CGCG	4 cut(s)	36, 95, 355, 1004
AccIII	TCCGGA	1 cut(s)	527
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	2 cut(s)	1320, 1387
AcsI	RAATTY	1 cut(s)	1150
AcuI	CTGAAG	3 cut(s)	877, 971, 1277
AcyI	GRCGYC	3 cut(s)	342, 358, 402
AfaI	GTAC	3 cut(s)	113, 483, 1376
AfeI	AGCGCT	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	591, 594, 648, 1126
AflIII	ACRYGT	1 cut(s)	1465
AgsI	TTSAA	4 cut(s)	883, 961, 1342, 1590
AjiI	CACGTC	1 cut(s)	211
AjnI	CCWGG	4 cut(s)	332, 918, 1389, 1582
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AloI	GAACNNNNNNTCC	4 cut(s)	607, 639, 1058, 1090
AluBI	AGCT	9 cut(s)	745, 866, 985, 1271, 1285, 1382, 1416, 1642, 1675
AluI	AGCT	9 cut(s)	745, 866, 985, 1271, 1285, 1382, 1416, 1642, 1675
Alw21I	GWGCWC	6 cut(s)	747, 868, 1287, 1330, 1418, 1644
Alw26I	GTCTC	3 cut(s)	1078, 1214, 1474
AlwI	GGATC	1 cut(s)	181
AlwNI	CAGNNNCTG	1 cut(s)	1625
Ama87I	CYCGRG	2 cut(s)	488, 563
Aor13HI	TCCGGA	1 cut(s)	527
Aor51HI	AGCGCT	1 cut(s)	446
AoxI	GGCC	9 cut(s)	84, 380, 485, 600, 807, 828, 1320, 1387, 1440
ApaI	GGGCCC	1 cut(s)	832
ApoI	RAATTY	1 cut(s)	1150
ArsI	GACNNNNNNTTYG	4 cut(s)	604, 607, 636, 639
AseI	ATTAAT	1 cut(s)	513
Asp700I	GAANNNNTTC	1 cut(s)	1022
AspLEI	GCGC	8 cut(s)	38, 97, 355, 360, 447, 818, 1004, 1370
AspS9I	GGNCC	9 cut(s)	486, 601, 719, 828, 829, 925, 1084, 1393, 1459
AsuC2I	CCSGG	3 cut(s)	929, 1147, 1309
AsuHPI	GGTGA	5 cut(s)	68, 139, 1192, 1255, 1468
AvaI	CYCGRG	2 cut(s)	488, 563
AvaII	GGWCC	5 cut(s)	719, 925, 1084, 1393, 1459
BaeGI	GKGCMC	1 cut(s)	832
BanI	GGYRCC	2 cut(s)	357, 1565
BanII	GRGCYC	6 cut(s)	747, 832, 868, 1287, 1418, 1644
BbsI	GAAGAC	1 cut(s)	1265
Bbv12I	GWGCWC	6 cut(s)	747, 868, 1287, 1330, 1418, 1644
BccI	CCATC	6 cut(s)	62, 728, 959, 1051, 1429, 1445
BceAI	ACGGC	6 cut(s)	85, 139, 500, 523, 608, 868
BcgI	CGANNNNNNTGC	4 cut(s)	274, 308, 929, 963
BciT130I	CCWGG	4 cut(s)	334, 920, 1391, 1584
BclI	TGATCA	1 cut(s)	1227
BcnI	CCSGG	3 cut(s)	929, 1147, 1309
BcoDI	GTCTC	3 cut(s)	1078, 1214, 1474
BfaI	CTAG	7 cut(s)	393, 969, 1523, 1604, 1631, 1676, 1707
BfmI	CTRYAG	1 cut(s)	605
BfoI	RGCGCY	2 cut(s)	361, 448
BfuAI	ACCTGC	2 cut(s)	1610, 1658
BglII	AGATCT	1 cut(s)	965
Bme1390I	CCNGG	7 cut(s)	334, 920, 929, 1147, 1309, 1391, 1584
Bme18I	GGWCC	5 cut(s)	719, 925, 1084, 1393, 1459
BmeT110I	CYCGRG	2 cut(s)	488, 563
BmgBI	CACGTC	1 cut(s)	211
BmgT120I	GGNCC	9 cut(s)	486, 601, 719, 828, 829, 925, 1084, 1393, 1459
BmiI	GGNNCC	7 cut(s)	359, 829, 830, 927, 1085, 1395, 1567
BmrFI	CCNGG	7 cut(s)	334, 920, 929, 1147, 1309, 1391, 1584
BmrI	ACTGGG	1 cut(s)	1562
BmsI	GCATC	5 cut(s)	525, 679, 1042, 1149, 1535
BmuI	ACTGGG	1 cut(s)	1562
BpiI	GAAGAC	1 cut(s)	1265
BpmI	CTGGAG	5 cut(s)	572, 650, 941, 1068, 1091
BpuEI	CTTGAG	2 cut(s)	830, 1579
BpuMI	CCSGG	3 cut(s)	929, 1147, 1309
BsaHI	GRCGYC	3 cut(s)	342, 358, 402
BsaI	GGTCTC	1 cut(s)	1078
BsaJI	CCNNGG	6 cut(s)	81, 332, 643, 796, 903, 1275
BsaWI	WCCGGW	4 cut(s)	527, 703, 821, 868
BsaXI	ACNNNNNCTCC	8 cut(s)	9, 39, 445, 475, 850, 880, 1058, 1088
Bsc4I	CCNNNNNNNGG	4 cut(s)	591, 594, 648, 1126
Bse118I	RCCGGY	4 cut(s)	12, 1171, 1322, 1385
Bse1I	ACTGG	3 cut(s)	298, 1051, 1557
Bse3DI	GCAATG	1 cut(s)	1323
BseAI	TCCGGA	1 cut(s)	527
BseBI	CCWGG	4 cut(s)	334, 920, 1391, 1584
BseDI	CCNNGG	6 cut(s)	81, 332, 643, 796, 903, 1275
BseGI	GGATG	3 cut(s)	1068, 1135, 1720
BseLI	CCNNNNNNNGG	4 cut(s)	591, 594, 648, 1126
BseMI	GCAATG	1 cut(s)	1323
BseMII	CTCAG	3 cut(s)	1173, 1415, 1485
BseNI	ACTGG	3 cut(s)	298, 1051, 1557
BseRI	GAGGAG	5 cut(s)	155, 453, 456, 518, 755
BseSI	GKGCMC	1 cut(s)	832
Bsh1236I	CGCG	4 cut(s)	36, 95, 355, 1004
Bsh1285I	CGRYCG	1 cut(s)	873
BshFI	GGCC	9 cut(s)	86, 382, 487, 602, 809, 830, 1322, 1389, 1442
BshNI	GGYRCC	2 cut(s)	357, 1565
BsiEI	CGRYCG	1 cut(s)	873
BsiHKAI	GWGCWC	6 cut(s)	747, 868, 1287, 1330, 1418, 1644
BsiHKCI	CYCGRG	2 cut(s)	488, 563
BslFI	GGGAC	2 cut(s)	581, 648
BslI	CCNNNNNNNGG	4 cut(s)	591, 594, 648, 1126
BsmAI	GTCTC	3 cut(s)	1078, 1214, 1474
BsmFI	GGGAC	2 cut(s)	581, 648
BsnI	GGCC	9 cut(s)	86, 382, 487, 602, 809, 830, 1322, 1389, 1442
Bso31I	GGTCTC	1 cut(s)	1078
BsoBI	CYCGRG	2 cut(s)	488, 563
Bsp120I	GGGCCC	1 cut(s)	828
Bsp1286I	GDGCHC	7 cut(s)	747, 832, 868, 1287, 1330, 1418, 1644
Bsp13I	TCCGGA	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	1374
Bsp143I	GATC	4 cut(s)	186, 228, 965, 1227
BspANI	GGCC	9 cut(s)	86, 382, 487, 602, 809, 830, 1322, 1389, 1442
BspCNI	CTCAG	3 cut(s)	1172, 1414, 1484
BspEI	TCCGGA	1 cut(s)	527
BspFNI	CGCG	4 cut(s)	36, 95, 355, 1004
BspHI	TCATGA	1 cut(s)	1026
BspLI	GGNNCC	7 cut(s)	359, 829, 830, 927, 1085, 1395, 1567
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	2 cut(s)	1610, 1658
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	146
BspT107I	GGYRCC	2 cut(s)	357, 1565
BspTNI	GGTCTC	1 cut(s)	1078
BsrDI	GCAATG	1 cut(s)	1323
BsrFI	RCCGGY	4 cut(s)	12, 1171, 1322, 1385
BsrGI	TGTACA	1 cut(s)	1374
BsrI	ACTGG	3 cut(s)	298, 1051, 1557
BssAI	RCCGGY	4 cut(s)	12, 1171, 1322, 1385
BssECI	CCNNGG	6 cut(s)	81, 332, 643, 796, 903, 1275
BssMI	GATC	4 cut(s)	186, 228, 965, 1227
BssNI	GRCGYC	3 cut(s)	342, 358, 402
BssT1I	CCWWGG	3 cut(s)	81, 643, 1275
Bst2UI	CCWGG	4 cut(s)	334, 920, 1391, 1584
Bst4CI	ACNGT	5 cut(s)	151, 679, 1225, 1504, 1533
Bst6I	CTCTTC	3 cut(s)	146, 245, 254
BstACI	GRCGYC	3 cut(s)	342, 358, 402
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	1374
BstC8I	GCNNGC	8 cut(s)	14, 176, 787, 1012, 1354, 1540, 1570, 1732
BstDEI	CTNAG	3 cut(s)	1159, 1401, 1471
BstF5I	GGATG	3 cut(s)	1068, 1135, 1720
BstFNI	CGCG	4 cut(s)	36, 95, 355, 1004
BstH2I	RGCGCY	2 cut(s)	361, 448
BstHHI	GCGC	8 cut(s)	38, 97, 355, 360, 447, 818, 1004, 1370
BstKTI	GATC	4 cut(s)	189, 231, 968, 1230
BstMAI	GTCTC	3 cut(s)	1078, 1214, 1474
BstMBI	GATC	4 cut(s)	186, 228, 965, 1227
BstMCI	CGRYCG	1 cut(s)	873
BstNI	CCWGG	4 cut(s)	334, 920, 1391, 1584
BstNSI	RCATGY	3 cut(s)	1041, 1294, 1469
BstSCI	CCNGG	7 cut(s)	332, 918, 927, 1145, 1307, 1389, 1582
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	832
BstUI	CGCG	4 cut(s)	36, 95, 355, 1004
BstV2I	GAAGAC	1 cut(s)	1265
BstX2I	RGATCY	2 cut(s)	186, 965
BstXI	CCANNNNNNTGG	1 cut(s)	1495
BstYI	RGATCY	2 cut(s)	186, 965
BsuRI	GGCC	9 cut(s)	86, 382, 487, 602, 809, 830, 1322, 1389, 1442
BtgZI	GCGATG	2 cut(s)	548, 1070
BtrI	CACGTC	1 cut(s)	211
BtsCI	GGATG	3 cut(s)	1068, 1135, 1720
BtsI	GCAGTG	3 cut(s)	437, 1377, 1420
BtsIMutI	CAGTG	5 cut(s)	437, 684, 1044, 1377, 1420
BveI	ACCTGC	2 cut(s)	1610, 1658
Cac8I	GCNNGC	8 cut(s)	14, 176, 787, 1012, 1354, 1540, 1570, 1732
CaiI	CAGNNNCTG	1 cut(s)	1625
CciI	TCATGA	1 cut(s)	1026
CfoI	GCGC	8 cut(s)	38, 97, 355, 360, 447, 818, 1004, 1370
Cfr10I	RCCGGY	4 cut(s)	12, 1171, 1322, 1385
Cfr13I	GGNCC	9 cut(s)	486, 601, 719, 828, 829, 925, 1084, 1393, 1459
CseI	GACGC	2 cut(s)	101, 826
Csp6I	GTAC	3 cut(s)	112, 482, 1375
CspCI	CAANNNNNGTGG	2 cut(s)	1597, 1632
CviQI	GTAC	3 cut(s)	112, 482, 1375
DdeI	CTNAG	3 cut(s)	1159, 1401, 1471
DinI	GGCGCC	1 cut(s)	359
DpnI	GATC	4 cut(s)	188, 230, 967, 1229
DpnII	GATC	4 cut(s)	186, 228, 965, 1227
DrdI	GACNNNNNNGTC	1 cut(s)	1466
DseDI	GACNNNNNNGTC	1 cut(s)	1466
EaeI	YGGCCR	2 cut(s)	1320, 1387
Eam1104I	CTCTTC	3 cut(s)	146, 245, 254
EarI	CTCTTC	3 cut(s)	146, 245, 254
EciI	GGCGGA	1 cut(s)	877
Ecl136II	GAGCTC	5 cut(s)	745, 866, 1285, 1416, 1642
Eco130I	CCWWGG	3 cut(s)	81, 643, 1275
Eco147I	AGGCCT	1 cut(s)	86
Eco24I	GRGCYC	6 cut(s)	747, 832, 868, 1287, 1418, 1644
Eco31I	GGTCTC	1 cut(s)	1078
Eco47I	GGWCC	5 cut(s)	719, 925, 1084, 1393, 1459
Eco47III	AGCGCT	1 cut(s)	446
Eco53kI	GAGCTC	5 cut(s)	745, 866, 1285, 1416, 1642
Eco57I	CTGAAG	3 cut(s)	877, 971, 1277
Eco88I	CYCGRG	2 cut(s)	488, 563
EcoICRI	GAGCTC	5 cut(s)	745, 866, 1285, 1416, 1642
EcoO109I	RGGNCCY	5 cut(s)	601, 828, 925, 1393, 1459
EcoRII	CCWGG	4 cut(s)	332, 918, 1389, 1582
EcoT14I	CCWWGG	3 cut(s)	81, 643, 1275
EcoT38I	GRGCYC	6 cut(s)	747, 832, 868, 1287, 1418, 1644
EgeI	GGCGCC	1 cut(s)	359
EheI	GGCGCC	1 cut(s)	359
ErhI	CCWWGG	3 cut(s)	81, 643, 1275
FaqI	GGGAC	2 cut(s)	581, 648
FauI	CCCGC	4 cut(s)	41, 323, 588, 1328
FbaI	TGATCA	1 cut(s)	1227
FokI	GGATG	3 cut(s)	1075, 1142, 1727
FriOI	GRGCYC	6 cut(s)	747, 832, 868, 1287, 1418, 1644
FspBI	CTAG	7 cut(s)	393, 969, 1523, 1604, 1631, 1676, 1707
GlaI	GCGC	8 cut(s)	37, 96, 354, 359, 446, 817, 1003, 1369
GsuI	CTGGAG	5 cut(s)	572, 650, 941, 1068, 1091
HaeII	RGCGCY	2 cut(s)	361, 448
HaeIII	GGCC	9 cut(s)	86, 382, 487, 602, 809, 830, 1322, 1389, 1442
HgaI	GACGC	2 cut(s)	101, 826
HhaI	GCGC	8 cut(s)	38, 97, 355, 360, 447, 818, 1004, 1370
Hin1I	GRCGYC	3 cut(s)	342, 358, 402
Hin6I	GCGC	8 cut(s)	36, 95, 353, 358, 445, 816, 1002, 1368
HinP1I	GCGC	8 cut(s)	36, 95, 353, 358, 445, 816, 1002, 1368
HindIII	AAGCTT	1 cut(s)	983
HphI	GGTGA	5 cut(s)	68, 139, 1192, 1255, 1468
Hpy166II	GTNNAC	2 cut(s)	1035, 1375
Hpy188I	TCNGA	6 cut(s)	91, 226, 675, 896, 1162, 1404
Hpy188III	TCNNGA	6 cut(s)	528, 551, 874, 989, 1027, 1108
Hpy8I	GTNNAC	2 cut(s)	1035, 1375
HpyCH4III	ACNGT	5 cut(s)	151, 679, 1225, 1504, 1533
HpyCH4IV	ACGT	4 cut(s)	6, 210, 342, 402
HpyCH4V	TGCA	9 cut(s)	607, 804, 980, 1010, 1041, 1316, 1425, 1619, 1664
HpyF3I	CTNAG	3 cut(s)	1159, 1401, 1471
HpySE526I	ACGT	4 cut(s)	6, 210, 342, 402
Hsp92I	GRCGYC	3 cut(s)	342, 358, 402
HspAI	GCGC	8 cut(s)	36, 95, 353, 358, 445, 816, 1002, 1368
KasI	GGCGCC	1 cut(s)	357
Kpn2I	TCCGGA	1 cut(s)	527
KroI	GCCGGC	1 cut(s)	12
KroNI	GCCGGC	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	1227
Kzo9I	GATC	4 cut(s)	186, 228, 965, 1227
LguI	GCTCTTC	1 cut(s)	146
LmnI	GCTCC	4 cut(s)	530, 742, 871, 1282
LweI	GCATC	5 cut(s)	525, 679, 1042, 1149, 1535
MaeI	CTAG	7 cut(s)	393, 969, 1523, 1604, 1631, 1676, 1707
MaeII	ACGT	4 cut(s)	6, 210, 342, 402
MaeIII	GTNAC	4 cut(s)	214, 1112, 1474, 1685
MalI	GATC	4 cut(s)	188, 230, 967, 1229
MboI	GATC	4 cut(s)	186, 228, 965, 1227
MflI	RGATCY	2 cut(s)	186, 965
MhlI	GDGCHC	7 cut(s)	747, 832, 868, 1287, 1330, 1418, 1644
MluCI	AATT	4 cut(s)	510, 514, 1150, 1183
Mly113I	GGCGCC	1 cut(s)	358
MlyI	GAGTC	6 cut(s)	563, 628, 630, 657, 720, 1571
MmeI	TCCRAC	3 cut(s)	114, 1077, 1486
MreI	CGCCGGCG	1 cut(s)	12
MroI	TCCGGA	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	12
MroXI	GAANNNNTTC	1 cut(s)	1022
MseI	TTAA	6 cut(s)	408, 513, 996, 1296, 1560, 1680
MslI	CAYNNNNRTG	2 cut(s)	1430, 1493
MspA1I	CMGCKG	3 cut(s)	109, 174, 1178
MspR9I	CCNGG	7 cut(s)	334, 920, 929, 1147, 1309, 1391, 1584
MteI	GCGCNGCGC	1 cut(s)	356
MvaI	CCWGG	4 cut(s)	334, 920, 1391, 1584
MvnI	CGCG	4 cut(s)	36, 95, 355, 1004
NaeI	GCCGGC	1 cut(s)	14
NarI	GGCGCC	1 cut(s)	358
NciI	CCSGG	3 cut(s)	929, 1147, 1309
NdeII	GATC	4 cut(s)	186, 228, 965, 1227
NgoMIV	GCCGGC	1 cut(s)	12
NlaIV	GGNNCC	7 cut(s)	359, 829, 830, 927, 1085, 1395, 1567
NmeAIII	GCCGAG	2 cut(s)	252, 928
NmuCI	GTSAC	4 cut(s)	214, 1112, 1474, 1685
NspI	RCATGY	3 cut(s)	1041, 1294, 1469
PagI	TCATGA	1 cut(s)	1026
PceI	AGGCCT	1 cut(s)	86
PciI	ACATGT	1 cut(s)	1465
PciSI	GCTCTTC	1 cut(s)	146
PdiI	GCCGGC	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	1022
PfeI	GAWTC	4 cut(s)	559, 700, 941, 1018
PflFI	GACNNNGTC	1 cut(s)	293
PfoI	TCCNGGA	2 cut(s)	918, 1145
PleI	GAGTC	6 cut(s)	562, 627, 630, 657, 719, 1571
PluTI	GGCGCC	1 cut(s)	361
PpsI	GAGTC	6 cut(s)	562, 627, 630, 657, 719, 1571
PpuMI	RGGWCCY	3 cut(s)	925, 1393, 1459
PscI	ACATGT	1 cut(s)	1465
PshBI	ATTAAT	1 cut(s)	513
Psp124BI	GAGCTC	5 cut(s)	747, 868, 1287, 1418, 1644
Psp5II	RGGWCCY	3 cut(s)	925, 1393, 1459
Psp6I	CCWGG	4 cut(s)	332, 918, 1389, 1582
PspGI	CCWGG	4 cut(s)	332, 918, 1389, 1582
PspN4I	GGNNCC	7 cut(s)	359, 829, 830, 927, 1085, 1395, 1567
PspOMI	GGGCCC	1 cut(s)	828
PspPI	GGNCC	9 cut(s)	486, 601, 719, 828, 829, 925, 1084, 1393, 1459
PspPPI	RGGWCCY	3 cut(s)	925, 1393, 1459
PstI	CTGCAG	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	1625
PsuI	RGATCY	2 cut(s)	186, 965
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	3 cut(s)	113, 483, 1376
RsaNI	GTAC	3 cut(s)	112, 482, 1375
RseI	CAYNNNNRTG	2 cut(s)	1430, 1493
SacI	GAGCTC	5 cut(s)	747, 868, 1287, 1418, 1644
SapI	GCTCTTC	1 cut(s)	146
SaqAI	TTAA	6 cut(s)	408, 513, 996, 1296, 1560, 1680
Sau3AI	GATC	4 cut(s)	186, 228, 965, 1227
Sau96I	GGNCC	9 cut(s)	486, 601, 719, 828, 829, 925, 1084, 1393, 1459
SchI	GAGTC	6 cut(s)	563, 628, 630, 657, 720, 1571
ScrFI	CCNGG	7 cut(s)	334, 920, 929, 1147, 1309, 1391, 1584
SduI	GDGCHC	7 cut(s)	747, 832, 868, 1287, 1330, 1418, 1644
SfaNI	GCATC	5 cut(s)	525, 679, 1042, 1149, 1535
SfcI	CTRYAG	1 cut(s)	605
SfoI	GGCGCC	1 cut(s)	359
SgrAI	CRCCGGYG	1 cut(s)	12
SinI	GGWCC	5 cut(s)	719, 925, 1084, 1393, 1459
SmiMI	CAYNNNNRTG	2 cut(s)	1430, 1493
SmlI	CTYRAG	2 cut(s)	845, 1594
SmoI	CTYRAG	2 cut(s)	845, 1594
Sse9I	AATT	4 cut(s)	510, 514, 1150, 1183
SseBI	AGGCCT	1 cut(s)	86
SspDI	GGCGCC	1 cut(s)	357
SspMI	CTAG	7 cut(s)	393, 969, 1523, 1604, 1631, 1676, 1707
SstI	GAGCTC	5 cut(s)	747, 868, 1287, 1418, 1644
StuI	AGGCCT	1 cut(s)	86
StyD4I	CCNGG	7 cut(s)	332, 918, 927, 1145, 1307, 1389, 1582
StyI	CCWWGG	3 cut(s)	81, 643, 1275
TaaI	ACNGT	5 cut(s)	151, 679, 1225, 1504, 1533
TaiI	ACGT	4 cut(s)	9, 213, 345, 405
TaqI	TCGA	4 cut(s)	557, 655, 732, 939
TasI	AATT	4 cut(s)	510, 514, 1150, 1183
TatI	WGTACW	2 cut(s)	111, 1374
TfiI	GAWTC	4 cut(s)	559, 700, 941, 1018
Tru1I	TTAA	6 cut(s)	408, 513, 996, 1296, 1560, 1680
Tru9I	TTAA	6 cut(s)	408, 513, 996, 1296, 1560, 1680
TscAI	CASTG	5 cut(s)	437, 684, 1051, 1377, 1427
TseFI	GTSAC	4 cut(s)	214, 1112, 1474, 1685
Tsp45I	GTSAC	4 cut(s)	214, 1112, 1474, 1685
TspDTI	ATGAA	4 cut(s)	1015, 1079, 1248, 1706
TspGWI	ACGGA	2 cut(s)	247, 508
TspRI	CASTG	5 cut(s)	437, 684, 1051, 1377, 1427
Tth111I	GACNNNGTC	1 cut(s)	293
VpaK11BI	GGWCC	5 cut(s)	719, 925, 1084, 1393, 1459
VspI	ATTAAT	1 cut(s)	513
XapI	RAATTY	1 cut(s)	1150
XceI	RCATGY	3 cut(s)	1041, 1294, 1469
XmnI	GAANNNNTTC	1 cut(s)	1022
XspI	CTAG	7 cut(s)	393, 969, 1523, 1604, 1631, 1676, 1707
ZraI	GACGTC	2 cut(s)	343, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.