Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Forward (+)

31891397 .. 31892980

Gene Structure 1584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1242300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTATACAATTGGCTGATTTTTCTTGGGCGGTGATGGTGCCGAAGAGCACTAGCAAAATGATGATCAAGTTTCTACTTGTACTGCTCATCAGCCTCTCAACCGTTCTGGCGGAGGGAAACGCATGCAATCCGATGGACCTGAAAGGGCTGACTGATTTCAAAGCCGCCATCCACAACGACATTGGCAACCGCCTAGCATCGTGGGTTGGCCACCGTTGCTGCATGTGGAAAGGAATAACTTGTGATAACAGGACCGGCAGAGTTACCGAAATCTATCTACCAGCTTCGAGTTCCGGAGCCCGCCTGGAAGGCTCTCTGTCTGCTTCCATAACTCTGATATCTTTCCTTCAAATCCTTTATATTGGTGGCAACCCTGGGCTTGTTGGGGAGATTCCACAAAGTCTTGGGAGTCTTACGAATCTGTTTCAGCTGTATTTGGCCTCGAATCGGCTTTCGGGTTCTATTCCTGAGTCGGTCACAAATTTGACAAATTTGGTGCTCTTCGATCTTCGTAACAATTCTCTGACCGGTCACATACCGCAGAGAATTGGTCAGTTGCAGGCCTTGCTAGATTTTGATGTTTCAAGAAACCTTTTGTCTGGGAAGCTTCCACCTTCAATGGCCAATTTATCATCCGTTGTAACTATATGGTTGCACAATAACTTTTTTGAGGGGCCAATTCCAGTTTTAAAAATGCCATCTCTCAAGCTTTTATTGCTCGCGAATAATAGTCTCACCGGAAGCATACCAACAAACTTTGGAGATTTGATTTCGCTCCGAGAGGTTGACCTATCGAACAACAAGCTTGAAGGAGCAATCCCAGACTCCCTGGGAAACTTGAGCATGCTACTGGTGCTCGAGTTGCAGCAAAACCGCTTTTCGGGGAAAATTCCAGACGAGTTTCTGAAGCTGGGGAATCTGGAGGTATTGAATTTATCAAACAATCATCTCGTGGGGAAAATTCCAGAGGGCAAACCGCTCAGTGACTTTCCCAAGAGTTCTTACTCCGGAAACACAGGCTTATGCGGAAAGCCTCTCACTCCCTGTAAGCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

354

Amino Acids

38.17

Weight (kDa)

8.49

Isoelectric Point (pI)

23.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	45 - 83	1.8e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	259 - 318	1.1e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	982
AccII	CGCG	1 cut(s)	725
AccIII	TCCGGA	2 cut(s)	296, 1010
AciI	CCGC	9 cut(s)	32, 113, 168, 193, 304, 542, 877, 980, 1029
AcoI	YGGCCR	2 cut(s)	211, 624
AcsI	RAATTY	5 cut(s)	484, 493, 891, 934, 963
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	2 cut(s)	450, 883
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	6 cut(s)	163, 353, 588, 621, 812, 934
AjnI	CCWGG	3 cut(s)	306, 376, 831
AluBI	AGCT	6 cut(s)	287, 433, 610, 712, 808, 913
AluI	AGCT	6 cut(s)	287, 433, 610, 712, 808, 913
Alw21I	GWGCWC	3 cut(s)	53, 504, 861
Alw26I	GTCTC	1 cut(s)	740
Ama87I	CYCGRG	1 cut(s)	860
Aor13HI	TCCGGA	2 cut(s)	296, 1010
AoxI	GGCC	5 cut(s)	211, 441, 564, 624, 677
ApeKI	GCWGC	2 cut(s)	222, 868
ApoI	RAATTY	5 cut(s)	484, 493, 891, 934, 963
AsiGI	ACCGGT	1 cut(s)	530
AspS9I	GGNCC	3 cut(s)	139, 255, 677
AsuHPI	GGTGA	2 cut(s)	46, 730
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	2 cut(s)	139, 255
BalI	TGGCCA	2 cut(s)	213, 626
BanI	GGYRCC	1 cut(s)	40
BanII	GRGCYC	1 cut(s)	304
BauI	CACGAG	1 cut(s)	953
Bbv12I	GWGCWC	3 cut(s)	53, 504, 861
BbvI	GCAGC	2 cut(s)	209, 880
BccI	CCATC	4 cut(s)	31, 130, 179, 709
BciT130I	CCWGG	3 cut(s)	308, 378, 833
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	740
BfaI	CTAG	4 cut(s)	54, 197, 572, 1060
BglI	GCCNNNNNGGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	168, 223, 869
BlsI	GCNGC	3 cut(s)	169, 224, 870
Bme1390I	CCNGG	3 cut(s)	308, 378, 833
Bme18I	GGWCC	2 cut(s)	139, 255
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	139, 255, 677
BmiI	GGNNCC	3 cut(s)	42, 301, 678
BmrFI	CCNGG	3 cut(s)	308, 378, 833
BmsI	GCATC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	692, 862
BsaJI	CCNNGG	4 cut(s)	376, 377, 831, 832
BsaWI	WCCGGW	4 cut(s)	296, 530, 740, 1010
Bsc4I	CCNNNNNNNGG	2 cut(s)	450, 883
Bse118I	RCCGGY	2 cut(s)	257, 530
Bse1I	ACTGG	2 cut(s)	686, 858
BseAI	TCCGGA	2 cut(s)	296, 1010
BseBI	CCWGG	3 cut(s)	308, 378, 833
BseDI	CCNNGG	4 cut(s)	376, 377, 831, 832
BseGI	GGATG	2 cut(s)	171, 635
BseLI	CCNNNNNNNGG	2 cut(s)	450, 883
BseMII	CTCAG	2 cut(s)	462, 997
BseNI	ACTGG	2 cut(s)	686, 858
BseXI	GCAGC	2 cut(s)	209, 880
BseYI	CCCAGC	1 cut(s)	913
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	5 cut(s)	213, 443, 566, 626, 679
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	530
BsiHKAI	GWGCWC	3 cut(s)	53, 504, 861
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	5 cut(s)	258, 297, 531, 741, 1011
BslI	CCNNNNNNNGG	2 cut(s)	450, 883
BsmAI	GTCTC	1 cut(s)	740
BsnI	GGCC	5 cut(s)	213, 443, 566, 626, 679
BsoBI	CYCGRG	1 cut(s)	860
Bsp1286I	GDGCHC	4 cut(s)	53, 304, 504, 861
Bsp13I	TCCGGA	2 cut(s)	296, 1010
Bsp143I	GATC	2 cut(s)	66, 508
Bsp68I	TCGCGA	1 cut(s)	725
BspACI	CCGC	9 cut(s)	32, 113, 168, 193, 304, 542, 877, 980, 1029
BspANI	GGCC	5 cut(s)	213, 443, 566, 626, 679
BspCNI	CTCAG	2 cut(s)	463, 996
BspEI	TCCGGA	2 cut(s)	296, 1010
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	3 cut(s)	42, 301, 678
BspQI	GCTCTTC	2 cut(s)	41, 509
BspT107I	GGYRCC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	982
BsrFI	RCCGGY	2 cut(s)	257, 530
BsrI	ACTGG	2 cut(s)	686, 858
BssAI	RCCGGY	2 cut(s)	257, 530
BssECI	CCNNGG	4 cut(s)	376, 377, 831, 832
BssMI	GATC	2 cut(s)	66, 508
BssSI	CACGAG	1 cut(s)	953
Bst2BI	CACGAG	1 cut(s)	953
Bst2UI	CCWGG	3 cut(s)	308, 378, 833
Bst4CI	ACNGT	2 cut(s)	106, 218
Bst6I	CTCTTC	2 cut(s)	41, 509
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	5 cut(s)	127, 304, 564, 723, 848
BstDEI	CTNAG	2 cut(s)	471, 983
BstF5I	GGATG	2 cut(s)	171, 635
BstFNI	CGCG	1 cut(s)	725
BstKTI	GATC	2 cut(s)	69, 511
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	2 cut(s)	66, 508
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
BstNI	CCWGG	3 cut(s)	308, 378, 833
BstNSI	RCATGY	3 cut(s)	129, 229, 850
BstSCI	CCNGG	3 cut(s)	306, 376, 831
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	2 cut(s)	209, 880
BsuRI	GGCC	5 cut(s)	213, 443, 566, 626, 679
BtsCI	GGATG	2 cut(s)	171, 635
BtsIMutI	CAGTG	1 cut(s)	991
BtuMI	TCGCGA	1 cut(s)	725
Cac8I	GCNNGC	5 cut(s)	127, 304, 564, 723, 848
Cfr10I	RCCGGY	2 cut(s)	257, 530
Cfr13I	GGNCC	3 cut(s)	139, 255, 677
Csp6I	GTAC	1 cut(s)	83
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	3 cut(s)	126, 226, 847
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	471, 983
DpnI	GATC	2 cut(s)	68, 510
DpnII	GATC	2 cut(s)	66, 508
DraI	TTTAAA	1 cut(s)	693
EaeI	YGGCCR	2 cut(s)	211, 624
Eam1104I	CTCTTC	2 cut(s)	41, 509
EarI	CTCTTC	2 cut(s)	41, 509
EciI	GGCGGA	1 cut(s)	128
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	304
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	139, 255
Eco57I	CTGAAG	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	860
EcoRII	CCWGG	3 cut(s)	306, 376, 831
EcoRV	GATATC	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	304
FaeI	CATG	3 cut(s)	129, 229, 850
FatI	CATG	3 cut(s)	125, 225, 846
FauI	CCCGC	1 cut(s)	311
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	168, 223, 869
FokI	GGATG	2 cut(s)	158, 622
FriOI	GRGCYC	1 cut(s)	304
Fsp4HI	GCNGC	3 cut(s)	168, 223, 869
FspBI	CTAG	4 cut(s)	54, 197, 572, 1060
GluI	GCNGC	3 cut(s)	168, 223, 869
GsaI	CCCAGC	1 cut(s)	917
GsuI	CTGGAG	1 cut(s)	944
HaeIII	GGCC	5 cut(s)	213, 443, 566, 626, 679
HapII	CCGG	5 cut(s)	258, 297, 531, 741, 1011
Hin1II	CATG	3 cut(s)	129, 229, 850
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	3 cut(s)	608, 710, 806
HinfI	GANTC	7 cut(s)	394, 412, 421, 448, 473, 827, 919
HpaII	CCGG	5 cut(s)	258, 297, 531, 741, 1011
HphI	GGTGA	2 cut(s)	46, 730
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	5 cut(s)	135, 339, 528, 782, 909
Hpy188III	TCNNGA	8 cut(s)	297, 470, 588, 724, 896, 923, 968, 1011
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	4 cut(s)	305, 359, 627, 806
HpyCH4III	ACNGT	2 cut(s)	106, 218
HpyCH4V	TGCA	5 cut(s)	129, 225, 562, 658, 868
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
HpyF3I	CTNAG	2 cut(s)	471, 983
Hsp92II	CATG	3 cut(s)	129, 229, 850
Kpn2I	TCCGGA	2 cut(s)	296, 1010
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	66, 508
LguI	GCTCTTC	2 cut(s)	41, 509
LmnI	GCTCC	3 cut(s)	299, 783, 815
Lsp1109I	GCAGC	2 cut(s)	209, 880
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	4 cut(s)	54, 197, 572, 1060
MaeIII	GTNAC	6 cut(s)	265, 478, 515, 533, 643, 986
MalI	GATC	2 cut(s)	68, 510
MbiI	CCGCTC	1 cut(s)	982
MboI	GATC	2 cut(s)	66, 508
MboII	GAAGA	3 cut(s)	58, 496, 503
MfeI	CAATTG	1 cut(s)	11
MhlI	GDGCHC	4 cut(s)	53, 304, 504, 861
MlsI	TGGCCA	2 cut(s)	213, 626
MluNI	TGGCCA	2 cut(s)	213, 626
MlyI	GAGTC	3 cut(s)	421, 482, 821
MnlI	CCTC	8 cut(s)	107, 109, 454, 667, 778, 919, 964, 1047
Mox20I	TGGCCA	2 cut(s)	213, 626
MroI	TCCGGA	2 cut(s)	296, 1010
MscI	TGGCCA	2 cut(s)	213, 626
MseI	TTAA	1 cut(s)	692
Msp20I	TGGCCA	2 cut(s)	213, 626
MspA1I	CMGCKG	1 cut(s)	433
MspI	CCGG	5 cut(s)	258, 297, 531, 741, 1011
MspR9I	CCNGG	3 cut(s)	308, 378, 833
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	3 cut(s)	308, 378, 833
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
NdeII	GATC	2 cut(s)	66, 508
NlaIII	CATG	3 cut(s)	129, 229, 850
NlaIV	GGNNCC	3 cut(s)	42, 301, 678
NmuCI	GTSAC	3 cut(s)	478, 533, 986
NruI	TCGCGA	1 cut(s)	725
NspI	RCATGY	3 cut(s)	129, 229, 850
PaeI	GCATGC	2 cut(s)	129, 850
PaeR7I	CTCGAG	1 cut(s)	860
PasI	CCCWGGG	2 cut(s)	377, 832
PceI	AGGCCT	1 cut(s)	566
PciSI	GCTCTTC	2 cut(s)	41, 509
PfeI	GAWTC	4 cut(s)	394, 421, 448, 919
PinAI	ACCGGT	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	169, 224, 870
PleI	GAGTC	3 cut(s)	420, 481, 821
PpsI	GAGTC	3 cut(s)	420, 481, 821
Psp6I	CCWGG	3 cut(s)	306, 376, 831
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	3 cut(s)	306, 376, 831
PspN4I	GGNNCC	3 cut(s)	42, 301, 678
PspPI	GGNCC	3 cut(s)	139, 255, 677
PspXI	VCTCGAGB	1 cut(s)	860
PvuII	CAGCTG	1 cut(s)	433
RruI	TCGCGA	1 cut(s)	725
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	2 cut(s)	41, 509
SaqAI	TTAA	1 cut(s)	692
SatI	GCNGC	3 cut(s)	168, 223, 869
Sau3AI	GATC	2 cut(s)	66, 508
Sau96I	GGNCC	3 cut(s)	139, 255, 677
SchI	GAGTC	3 cut(s)	421, 482, 821
ScrFI	CCNGG	3 cut(s)	308, 378, 833
SduI	GDGCHC	4 cut(s)	53, 304, 504, 861
SfaNI	GCATC	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	860
SinI	GGWCC	2 cut(s)	139, 255
SlaI	CTCGAG	1 cut(s)	860
SmlI	CTYRAG	3 cut(s)	707, 841, 860
SmoI	CTYRAG	3 cut(s)	707, 841, 860
SphI	GCATGC	2 cut(s)	129, 850
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	9 cut(s)	32, 113, 168, 193, 304, 542, 877, 980, 1029
SspMI	CTAG	4 cut(s)	54, 197, 572, 1060
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	3 cut(s)	306, 376, 831
TaaI	ACNGT	2 cut(s)	106, 218
TaqI	TCGA	5 cut(s)	290, 446, 507, 797, 861
TaqII	GACCGA	1 cut(s)	466
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	4 cut(s)	394, 421, 448, 919
Tru1I	TTAA	1 cut(s)	692
Tru9I	TTAA	1 cut(s)	692
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	3 cut(s)	478, 533, 986
TseI	GCWGC	2 cut(s)	222, 868
Tsp45I	GTSAC	3 cut(s)	478, 533, 986
TspGWI	ACGGA	1 cut(s)	628
TspRI	CASTG	1 cut(s)	991
VpaK11BI	GGWCC	2 cut(s)	139, 255
XapI	RAATTY	5 cut(s)	484, 493, 891, 934, 963
XceI	RCATGY	3 cut(s)	129, 229, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	860
XspI	CTAG	4 cut(s)	54, 197, 572, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.