Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Forward (+)

5786374 .. 5786898

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1082800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTAGGCACTCTCTATCCTTCAATAAATCTCATTTCATTCCTTGAAGTCCTGAATCTTGGTGAGAACTCTGACCTCACCGGAAACATCCCAGAACTCATCCTTCCGAAACTCCAAAGGCTTTACCTCTATTCAAACAGTTTCTATGGACCTATGCCTGATTCAATTGCAAGCTTGACACGTTTAGTAAGTTTGGATTTTCATAACAACTCTCTGAGTGGTCACATACCACAGGGAATTGGTCAATTGCAAGTCTTGCAAGACCTTGATTTTTCAAACAATTTTTTGTCTGGTAAACTTCCCTCTTCCATGGCTAATCTGTCTGCCATTAGAAATCTAGGGTTGGACTCTAATTTTCTTGAGGGGCCAATTACATTTCTGTCGATCTCTCCGAAAATGTCTCATCTCAGGCTTATAAGGCTGCAGGATACTAGTCTTAGTAATGGTTTTGATACTGAGGTTGCTTTTATAAAAAGTGGATATAAAAAAAAGTTGAGTTCAAAAAGGTATCTGGTAAACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

175

Amino Acids

19.27

Weight (kDa)

7.97

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	416, 470
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	6 cut(s)	24, 47, 135, 165, 276, 501
AhlI	ACTAGT	1 cut(s)	431
AluBI	AGCT	1 cut(s)	174
AluI	AGCT	1 cut(s)	174
Alw26I	GTCTC	1 cut(s)	405
AoxI	GGCC	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	421
AspS9I	GGNCC	2 cut(s)	149, 365
AsuHPI	GGTGA	2 cut(s)	70, 74
AvaII	GGWCC	1 cut(s)	149
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BbvI	GCAGC	1 cut(s)	408
BciVI	GTATCC	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	405
BcuI	ACTAGT	1 cut(s)	431
BfaI	CTAG	2 cut(s)	338, 432
BfmI	CTRYAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	421
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	149
BmgT120I	GGNCC	2 cut(s)	149, 365
BmiI	GGNNCC	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	80
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	2 cut(s)	87, 99
BseMII	CTCAG	3 cut(s)	206, 421, 447
BseXI	GCAGC	1 cut(s)	408
BshFI	GGCC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	81
BsmAI	GTCTC	1 cut(s)	405
BsnI	GGCC	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	384
Bsp19I	CCATGG	1 cut(s)	309
BspANI	GGCC	1 cut(s)	367
BspCNI	CTCAG	3 cut(s)	207, 420, 448
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	256
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	4 cut(s)	215, 407, 437, 456
BstDSI	CCRYGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	87, 99
BstKTI	GATC	1 cut(s)	387
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 418
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	408
BsuI	GTATCC	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	367
BtgI	CCRYGG	1 cut(s)	309
BtsCI	GGATG	2 cut(s)	87, 99
Cac8I	GCNNGC	1 cut(s)	172
Cfr13I	GGNCC	2 cut(s)	149, 365
CviAII	CATG	1 cut(s)	310
CviJI	RGCY	6 cut(s)	121, 174, 314, 367, 412, 421
CviKI_1	RGCY	6 cut(s)	121, 174, 314, 367, 412, 421
DdeI	CTNAG	4 cut(s)	215, 407, 437, 456
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	1 cut(s)	313
FaiI	YATR	8 cut(s)	147, 155, 204, 227, 311, 416, 470, 483
FatI	CATG	1 cut(s)	309
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	2 cut(s)	74, 86
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	338, 432
GluI	GCNGC	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	367
HapII	CCGG	1 cut(s)	81
Hin1II	CATG	1 cut(s)	313
HindIII	AAGCTT	1 cut(s)	172
HinfI	GANTC	3 cut(s)	55, 161, 347
HpaII	CCGG	1 cut(s)	81
HphI	GGTGA	2 cut(s)	70, 74
Hpy166II	GTNNAC	2 cut(s)	296, 517
Hpy188I	TCNGA	4 cut(s)	73, 108, 216, 393
Hpy188III	TCNNGA	2 cut(s)	52, 359
Hpy8I	GTNNAC	2 cut(s)	296, 517
HpyAV	CCTTC	2 cut(s)	30, 113
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	181
HpyCH4V	TGCA	4 cut(s)	170, 250, 259, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 418
HpyF3I	CTNAG	4 cut(s)	215, 407, 437, 456
HpySE526I	ACGT	1 cut(s)	181
Hsp92II	CATG	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	384
LpnPI	CCDG	9 cut(s)	65, 94, 105, 171, 218, 276, 394, 410, 497
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	2 cut(s)	338, 432
MaeII	ACGT	1 cut(s)	181
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	1 cut(s)	297
MfeI	CAATTG	2 cut(s)	165, 245
MluCI	AATT	6 cut(s)	165, 237, 245, 280, 352, 369
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	5 cut(s)	86, 137, 313, 355, 451
MseI	TTAA	1 cut(s)	523
MspI	CCGG	1 cut(s)	81
MunI	CAATTG	2 cut(s)	165, 245
MwoI	GCNNNNNNNGC	2 cut(s)	256, 418
NcoI	CCATGG	1 cut(s)	309
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	1 cut(s)	313
NlaIV	GGNNCC	1 cut(s)	366
NmuCI	GTSAC	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	389
PfeI	GAWTC	2 cut(s)	55, 161
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
PsiI	TTATAA	2 cut(s)	416, 470
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	2 cut(s)	149, 365
PstI	CTGCAG	1 cut(s)	426
SaqAI	TTAA	1 cut(s)	523
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	2 cut(s)	149, 365
SchI	GAGTC	1 cut(s)	341
SetI	ASST	8 cut(s)	78, 129, 154, 176, 184, 267, 462, 509
SfcI	CTRYAG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SpeI	ACTAGT	1 cut(s)	431
Sse9I	AATT	6 cut(s)	165, 237, 245, 280, 352, 369
SspMI	CTAG	2 cut(s)	338, 432
StyI	CCWWGG	1 cut(s)	309
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	184
TaqI	TCGA	1 cut(s)	383
TasI	AATT	6 cut(s)	165, 237, 245, 280, 352, 369
TfiI	GAWTC	2 cut(s)	55, 161
Tru1I	TTAA	1 cut(s)	523
Tru9I	TTAA	1 cut(s)	523
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	27, 191
VpaK11BI	GGWCC	1 cut(s)	149
XspI	CTAG	2 cut(s)	338, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.