Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Forward (+)

35056427 .. 35075817

Gene Structure 19391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG286500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGTCGTTGCAAGTGCTTGACATGGCCAGCTGTAACCTCACCGGCACGATTCCGGTCAGTCTAGGCTTTTTGAAGAACTTACACACGTTGTTTCTATATATTAACCGTTTGAGTGGTTATATACATCCACAACTTTCAGGTATGGTGAGTCTGAGGTCTTTGGATCTCTCTGTTAACGAACTCACTGGAGAAATACCAGAAAGTCTCTCGGAGCTCAAGAACCTTACCCTACTCAACCTGTTTACGAACAATTTTTACGGCCCAATACCCAACTTCATCGGCGATCTTCCTCATCTGGAGGTGCTTCATCTTTGGCAGAACAACTTTACATTTGAACTACCTGAGAGTCTTGGCCGGAATGGAAGGCTCGAAGACCTCGATGTAGCCGAGGACTGGACATCTTCTTGTGTCGATCGTATAGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

16.12

Weight (kDa)

4.5

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	3 - 62	4.4e-06	Leucine rich repeat
LRR_14	PF23598	45 - 131	3.3e-06	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	2 cut(s)	27, 355
AfiI	CCNNNNNNNGG	1 cut(s)	396
AflIII	ACRYGT	1 cut(s)	87
AgsI	TTSAA	2 cut(s)	76, 338
AluBI	AGCT	2 cut(s)	33, 217
AluI	AGCT	2 cut(s)	33, 217
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	3 cut(s)	27, 262, 355
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	34, 160
BalI	TGGCCA	1 cut(s)	29
BanII	GRGCYC	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	219
BceAI	ACGGC	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	212
BfaI	CTAG	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	2 cut(s)	210, 320
BpuEI	CTTGAG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	390
BsaWI	WCCGGW	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	396
Bse118I	RCCGGY	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	193, 401
BseDI	CCNNGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	396
BseMII	CTCAG	2 cut(s)	146, 336
BseNI	ACTGG	2 cut(s)	193, 401
Bsh1285I	CGRYCG	1 cut(s)	418
BshFI	GGCC	3 cut(s)	29, 264, 357
BsiEI	CGRYCG	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	45, 56, 358
BslI	CCNNNNNNNGG	1 cut(s)	396
BsmAI	GTCTC	1 cut(s)	212
BsnI	GGCC	3 cut(s)	29, 264, 357
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	166, 286, 415
BspANI	GGCC	3 cut(s)	29, 264, 357
BspCNI	CTCAG	2 cut(s)	147, 337
BspPI	GGATC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	44
BsrI	ACTGG	2 cut(s)	193, 401
BssAI	RCCGGY	1 cut(s)	44
BssECI	CCNNGG	1 cut(s)	390
BssMI	GATC	3 cut(s)	166, 286, 415
Bst4CI	ACNGT	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	155, 345
BstF5I	GGATG	1 cut(s)	127
BstKTI	GATC	3 cut(s)	169, 289, 418
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	3 cut(s)	166, 286, 415
BstMCI	CGRYCG	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	29, 264, 357
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	44
Cfr13I	GGNCC	1 cut(s)	263
CviAII	CATG	1 cut(s)	25
CviJI	RGCY	8 cut(s)	29, 33, 69, 217, 264, 357, 370, 389
CviKI_1	RGCY	8 cut(s)	29, 33, 69, 217, 264, 357, 370, 389
DdeI	CTNAG	2 cut(s)	155, 345
DpnI	GATC	3 cut(s)	168, 288, 417
DpnII	GATC	3 cut(s)	166, 286, 415
EaeI	YGGCCR	2 cut(s)	27, 355
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	1 cut(s)	28
FaiI	YATR	7 cut(s)	26, 100, 102, 123, 125, 146, 422
FatI	CATG	1 cut(s)	24
FokI	GGATG	1 cut(s)	114
FriOI	GRGCYC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	65
GsuI	CTGGAG	2 cut(s)	210, 320
HaeIII	GGCC	3 cut(s)	29, 264, 357
HapII	CCGG	3 cut(s)	45, 56, 358
Hin1II	CATG	1 cut(s)	28
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	4 cut(s)	5, 52, 151, 349
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	3 cut(s)	45, 56, 358
HphI	GGTGA	2 cut(s)	34, 160
Hpy166II	GTNNAC	2 cut(s)	178, 246
Hpy188I	TCNGA	2 cut(s)	156, 214
Hpy188III	TCNNGA	2 cut(s)	220, 299
Hpy8I	GTNNAC	2 cut(s)	178, 246
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	89
HpyCH4V	TGCA	1 cut(s)	13
HpyF3I	CTNAG	2 cut(s)	155, 345
HpySE526I	ACGT	1 cut(s)	89
Hsp92II	CATG	1 cut(s)	28
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	166, 286, 415
LmnI	GCTCC	1 cut(s)	214
MaeI	CTAG	1 cut(s)	65
MaeII	ACGT	1 cut(s)	89
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	168, 288, 417
MboI	GATC	3 cut(s)	166, 286, 415
MboII	GAAGA	4 cut(s)	88, 281, 386, 396
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	29
MluCI	AATT	2 cut(s)	253, 427
MluNI	TGGCCA	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	14, 160, 358
MnlI	CCTC	6 cut(s)	50, 150, 295, 303, 385, 389
Mox20I	TGGCCA	1 cut(s)	29
MscI	TGGCCA	1 cut(s)	29
MseI	TTAA	2 cut(s)	105, 177
Msp20I	TGGCCA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	33
MspI	CCGG	3 cut(s)	45, 56, 358
NdeII	GATC	3 cut(s)	166, 286, 415
NlaIII	CATG	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 387
PfeI	GAWTC	1 cut(s)	52
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	3 cut(s)	13, 159, 357
PpsI	GAGTC	3 cut(s)	13, 159, 357
Psp124BI	GAGCTC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	263
PsrI	GAACNNNNNNTAC	2 cut(s)	242, 274
PsuI	RGATCY	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	418
PvuII	CAGCTG	1 cut(s)	33
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	105, 177
Sau3AI	GATC	3 cut(s)	166, 286, 415
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	3 cut(s)	14, 160, 358
SduI	GDGCHC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	2 cut(s)	253, 427
SspMI	CTAG	1 cut(s)	65
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	92
TaqI	TCGA	3 cut(s)	372, 381, 414
TasI	AATT	2 cut(s)	253, 427
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	2 cut(s)	105, 177
Tru9I	TTAA	2 cut(s)	105, 177
TscAI	CASTG	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	268, 299
TspRI	CASTG	1 cut(s)	193
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.