Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Forward (+)

31941358 .. 31942950

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1242700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGCTATACAATTGGCTGATTTTTCTTGGGCGGTGATGGTGCCGAAGAGCACTAGCAAAATGATGATCAAGTTTCTACTTGTACTGCTCATCAGCCTCTCAACCGTTCTGGCGGAGGGAAACGCATGCAATCCGATGGACCTGAAAGGGCTGACTGATTTCAAAGCCGCCATCCACAACGACATTGGCAACCGCCTAGCATCGTGGGTTGGCCACCGTTGCTGCATGTGGAAAGGAATAACTTGTGATAACAGGACCGGCAGAGTTACCGAAATCAATCTACCAGCTTCGAGTTACGGCGCTCGCCTGGAAGGCTCTCTGTCTGCTTCCGTAACTCTGATATCTTTCCTTCAAGTCCTCGATATTGGTGGCAACCCTGGGCTTGTTGGGGAGATTCCACAAAGTCTTGGGAGTCTTAAGAATCTGTTTAGGCTGTCTTTGGTCTCCAATCGGCTTTCAGGTTCTATTCCTGAGTCAGTTGCAAGTTTGACAAATTTGGTGTTCTTGGATCTTCGTAACAATTCTCTGACCGGTCACATACCGCAGAGAATTGGTCAGTTGCAGGCCTTGCTAGATTTTGATGTTTCAAGAAACCGTTTGTCTGGGAAGCTTCCACCTTCAATGGCCAATTTATCATCCGTTGTAACTATATGGTTGCACAATAACTTTTTTGAGGGGCCAATTCCAGTTTTAAAAATGCCATCTCTCAAGCTTTTATTGCTCGCGAATAATAGTCTCACCGGAAGCATACCAACAAACTTTGGAGATTTGATTGCGCTCCGAGAGGTTAACCTATCGAACAACAAGCTTGAAGGAGCAATCCCAGAATCCTTGGGAAACTTGAGCATGCTACTGGTGCTCGAGTTGCAGCAAAACCGCTTTTCGGGGAAAATTCCAGACGAGTTTCTGAAGCTGGGGAATCTGGAGGAATTGAATTTATCAAACAATCATCTCGTGGGGAAAATTCCAGAGGGCAAACCGCTCAGTGACTTTCCCAAGAGTTCTTACTCCGGAAACACAGGCTTATGCGGAAAGCCTCTCACTCCCTGTAAGCCTATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

354

Amino Acids

38.14

Weight (kDa)

8.88

Isoelectric Point (pI)

24.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	45 - 83	1.8e-08	Leucine rich repeat N-terminal domain
LRR_8	PF13855	260 - 318	1.3e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	40
AccBSI	CCGCTC	1 cut(s)	982
AccII	CGCG	1 cut(s)	725
AccIII	TCCGGA	1 cut(s)	1010
AciI	CCGC	8 cut(s)	32, 113, 168, 193, 542, 877, 980, 1029
AclWI	GGATC	1 cut(s)	516
AcoI	YGGCCR	2 cut(s)	211, 624
AcsI	RAATTY	4 cut(s)	493, 891, 934, 963
AcuI	CTGAAG	1 cut(s)	929
AfaI	GTAC	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	883
AflII	CTTAAG	1 cut(s)	416
AgeI	ACCGGT	1 cut(s)	530
AgsI	TTSAA	6 cut(s)	163, 353, 588, 621, 812, 934
AjnI	CCWGG	2 cut(s)	306, 376
AluBI	AGCT	5 cut(s)	287, 610, 712, 808, 913
AluI	AGCT	5 cut(s)	287, 610, 712, 808, 913
Alw21I	GWGCWC	2 cut(s)	53, 861
Alw26I	GTCTC	2 cut(s)	448, 740
AlwI	GGATC	1 cut(s)	516
Ama87I	CYCGRG	1 cut(s)	860
Aor13HI	TCCGGA	1 cut(s)	1010
AoxI	GGCC	4 cut(s)	211, 564, 624, 677
ApeKI	GCWGC	2 cut(s)	222, 868
ApoI	RAATTY	4 cut(s)	493, 891, 934, 963
AsiGI	ACCGGT	1 cut(s)	530
AspLEI	GCGC	2 cut(s)	302, 778
AspS9I	GGNCC	3 cut(s)	139, 255, 677
AsuHPI	GGTGA	2 cut(s)	46, 730
AvaI	CYCGRG	1 cut(s)	860
AvaII	GGWCC	2 cut(s)	139, 255
BalI	TGGCCA	2 cut(s)	213, 626
BanI	GGYRCC	1 cut(s)	40
BauI	CACGAG	1 cut(s)	953
Bbv12I	GWGCWC	2 cut(s)	53, 861
BbvI	GCAGC	2 cut(s)	209, 880
BccI	CCATC	4 cut(s)	31, 130, 179, 709
BceAI	ACGGC	1 cut(s)	313
BciT130I	CCWGG	2 cut(s)	308, 378
BclI	TGATCA	1 cut(s)	66
BcoDI	GTCTC	2 cut(s)	448, 740
BfaI	CTAG	4 cut(s)	54, 197, 572, 1060
BfoI	RGCGCY	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	168, 223, 869
BlsI	GCNGC	3 cut(s)	169, 224, 870
Bme1390I	CCNGG	2 cut(s)	308, 378
Bme18I	GGWCC	2 cut(s)	139, 255
BmeT110I	CYCGRG	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	139, 255, 677
BmiI	GGNNCC	2 cut(s)	42, 678
BmrFI	CCNGG	2 cut(s)	308, 378
BmsI	GCATC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	944
BpuEI	CTTGAG	2 cut(s)	692, 862
BsaI	GGTCTC	1 cut(s)	448
BsaJI	CCNNGG	3 cut(s)	376, 377, 831
BsaWI	WCCGGW	3 cut(s)	530, 740, 1010
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse118I	RCCGGY	2 cut(s)	257, 530
Bse1I	ACTGG	2 cut(s)	686, 858
BseAI	TCCGGA	1 cut(s)	1010
BseBI	CCWGG	2 cut(s)	308, 378
BseDI	CCNNGG	3 cut(s)	376, 377, 831
BseGI	GGATG	2 cut(s)	171, 635
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMII	CTCAG	2 cut(s)	462, 997
BseNI	ACTGG	2 cut(s)	686, 858
BseXI	GCAGC	2 cut(s)	209, 880
BseYI	CCCAGC	1 cut(s)	913
Bsh1236I	CGCG	1 cut(s)	725
BshFI	GGCC	4 cut(s)	213, 566, 626, 679
BshNI	GGYRCC	1 cut(s)	40
BshTI	ACCGGT	1 cut(s)	530
BsiHKAI	GWGCWC	2 cut(s)	53, 861
BsiHKCI	CYCGRG	1 cut(s)	860
BsiSI	CCGG	4 cut(s)	258, 531, 741, 1011
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	2 cut(s)	448, 740
BsnI	GGCC	4 cut(s)	213, 566, 626, 679
Bso31I	GGTCTC	1 cut(s)	448
BsoBI	CYCGRG	1 cut(s)	860
Bsp1286I	GDGCHC	2 cut(s)	53, 861
Bsp13I	TCCGGA	1 cut(s)	1010
Bsp143I	GATC	2 cut(s)	66, 508
Bsp68I	TCGCGA	1 cut(s)	725
BspACI	CCGC	8 cut(s)	32, 113, 168, 193, 542, 877, 980, 1029
BspANI	GGCC	4 cut(s)	213, 566, 626, 679
BspCNI	CTCAG	2 cut(s)	463, 996
BspEI	TCCGGA	1 cut(s)	1010
BspFNI	CGCG	1 cut(s)	725
BspLI	GGNNCC	2 cut(s)	42, 678
BspPI	GGATC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	40
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	448
BsrBI	CCGCTC	1 cut(s)	982
BsrFI	RCCGGY	2 cut(s)	257, 530
BsrI	ACTGG	2 cut(s)	686, 858
BssAI	RCCGGY	2 cut(s)	257, 530
BssECI	CCNNGG	3 cut(s)	376, 377, 831
BssMI	GATC	2 cut(s)	66, 508
BssSI	CACGAG	1 cut(s)	953
BssT1I	CCWWGG	1 cut(s)	831
Bst2BI	CACGAG	1 cut(s)	953
Bst2UI	CCWGG	2 cut(s)	308, 378
Bst4CI	ACNGT	3 cut(s)	106, 218, 596
Bst6I	CTCTTC	1 cut(s)	41
BstAFI	CTTAAG	1 cut(s)	416
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	5 cut(s)	127, 304, 564, 723, 848
BstDEI	CTNAG	2 cut(s)	471, 983
BstF5I	GGATG	2 cut(s)	171, 635
BstFNI	CGCG	1 cut(s)	725
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	2 cut(s)	302, 778
BstKTI	GATC	2 cut(s)	69, 511
BstMAI	GTCTC	2 cut(s)	448, 740
BstMBI	GATC	2 cut(s)	66, 508
BstMWI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
BstNI	CCWGG	2 cut(s)	308, 378
BstNSI	RCATGY	3 cut(s)	129, 229, 850
BstSCI	CCNGG	2 cut(s)	306, 376
BstUI	CGCG	1 cut(s)	725
BstV1I	GCAGC	2 cut(s)	209, 880
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
BsuRI	GGCC	4 cut(s)	213, 566, 626, 679
BtsCI	GGATG	2 cut(s)	171, 635
BtsIMutI	CAGTG	1 cut(s)	991
BtuMI	TCGCGA	1 cut(s)	725
Cac8I	GCNNGC	5 cut(s)	127, 304, 564, 723, 848
CfoI	GCGC	2 cut(s)	302, 778
Cfr10I	RCCGGY	2 cut(s)	257, 530
Cfr13I	GGNCC	3 cut(s)	139, 255, 677
Csp6I	GTAC	1 cut(s)	83
CspAI	ACCGGT	1 cut(s)	530
CviAII	CATG	3 cut(s)	126, 226, 847
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	2 cut(s)	471, 983
DpnI	GATC	2 cut(s)	68, 510
DpnII	GATC	2 cut(s)	66, 508
DraI	TTTAAA	1 cut(s)	693
EaeI	YGGCCR	2 cut(s)	211, 624
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	831
Eco147I	AGGCCT	1 cut(s)	566
Eco31I	GGTCTC	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	139, 255
Eco57I	CTGAAG	1 cut(s)	929
Eco88I	CYCGRG	1 cut(s)	860
EcoRII	CCWGG	2 cut(s)	306, 376
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	1 cut(s)	831
ErhI	CCWWGG	1 cut(s)	831
FaeI	CATG	3 cut(s)	129, 229, 850
FaiI	YATR	9 cut(s)	8, 127, 227, 539, 650, 652, 749, 848, 1027
FatI	CATG	3 cut(s)	125, 225, 846
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	3 cut(s)	168, 223, 869
FokI	GGATG	2 cut(s)	158, 622
Fsp4HI	GCNGC	3 cut(s)	168, 223, 869
FspBI	CTAG	4 cut(s)	54, 197, 572, 1060
GlaI	GCGC	2 cut(s)	301, 777
GluI	GCNGC	3 cut(s)	168, 223, 869
GsaI	CCCAGC	1 cut(s)	917
GsuI	CTGGAG	1 cut(s)	944
HaeII	RGCGCY	1 cut(s)	303
HaeIII	GGCC	4 cut(s)	213, 566, 626, 679
HapII	CCGG	4 cut(s)	258, 531, 741, 1011
HhaI	GCGC	2 cut(s)	302, 778
Hin1II	CATG	3 cut(s)	129, 229, 850
Hin6I	GCGC	2 cut(s)	300, 776
HinP1I	GCGC	2 cut(s)	300, 776
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HindIII	AAGCTT	3 cut(s)	608, 710, 806
HinfI	GANTC	6 cut(s)	394, 412, 421, 473, 827, 919
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	4 cut(s)	258, 531, 741, 1011
HphI	GGTGA	2 cut(s)	46, 730
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	5 cut(s)	135, 339, 528, 782, 909
Hpy188III	TCNNGA	7 cut(s)	470, 588, 724, 896, 923, 968, 1011
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	4 cut(s)	305, 359, 627, 806
HpyCH4III	ACNGT	3 cut(s)	106, 218, 596
HpyCH4V	TGCA	6 cut(s)	129, 225, 482, 562, 658, 868
HpyF10VI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
HpyF3I	CTNAG	2 cut(s)	471, 983
Hsp92II	CATG	3 cut(s)	129, 229, 850
HspAI	GCGC	2 cut(s)	300, 776
Kpn2I	TCCGGA	1 cut(s)	1010
Ksp22I	TGATCA	1 cut(s)	66
KspAI	GTTAAC	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	66, 508
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	783, 815
Lsp1109I	GCAGC	2 cut(s)	209, 880
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	4 cut(s)	54, 197, 572, 1060
MaeIII	GTNAC	7 cut(s)	265, 293, 331, 515, 533, 643, 986
MalI	GATC	2 cut(s)	68, 510
MbiI	CCGCTC	1 cut(s)	982
MboI	GATC	2 cut(s)	66, 508
MboII	GAAGA	2 cut(s)	58, 503
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	508
MhlI	GDGCHC	2 cut(s)	53, 861
MlsI	TGGCCA	2 cut(s)	213, 626
MluNI	TGGCCA	2 cut(s)	213, 626
MlyI	GAGTC	2 cut(s)	421, 482
MnlI	CCTC	8 cut(s)	107, 109, 368, 667, 778, 919, 964, 1047
Mox20I	TGGCCA	2 cut(s)	213, 626
MroI	TCCGGA	1 cut(s)	1010
MscI	TGGCCA	2 cut(s)	213, 626
MseI	TTAA	3 cut(s)	417, 692, 789
Msp20I	TGGCCA	2 cut(s)	213, 626
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	4 cut(s)	258, 531, 741, 1011
MspR9I	CCNGG	2 cut(s)	308, 378
MunI	CAATTG	1 cut(s)	11
MvaI	CCWGG	2 cut(s)	308, 378
MvnI	CGCG	1 cut(s)	725
MwoI	GCNNNNNNNGC	6 cut(s)	219, 312, 568, 718, 856, 865
NdeII	GATC	2 cut(s)	66, 508
NlaIII	CATG	3 cut(s)	129, 229, 850
NlaIV	GGNNCC	2 cut(s)	42, 678
NmuCI	GTSAC	2 cut(s)	533, 986
NruI	TCGCGA	1 cut(s)	725
NspI	RCATGY	3 cut(s)	129, 229, 850
PaeI	GCATGC	2 cut(s)	129, 850
PaeR7I	CTCGAG	1 cut(s)	860
PasI	CCCWGGG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	566
PciSI	GCTCTTC	1 cut(s)	41
PfeI	GAWTC	4 cut(s)	394, 421, 827, 919
PinAI	ACCGGT	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	169, 224, 870
PleI	GAGTC	2 cut(s)	420, 481
PpsI	GAGTC	2 cut(s)	420, 481
Psp6I	CCWGG	2 cut(s)	306, 376
PspFI	CCCAGC	1 cut(s)	913
PspGI	CCWGG	2 cut(s)	306, 376
PspN4I	GGNNCC	2 cut(s)	42, 678
PspPI	GGNCC	3 cut(s)	139, 255, 677
PspXI	VCTCGAGB	1 cut(s)	860
PsuI	RGATCY	1 cut(s)	508
RruI	TCGCGA	1 cut(s)	725
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	417, 692, 789
SatI	GCNGC	3 cut(s)	168, 223, 869
Sau3AI	GATC	2 cut(s)	66, 508
Sau96I	GGNCC	3 cut(s)	139, 255, 677
SchI	GAGTC	2 cut(s)	421, 482
ScrFI	CCNGG	2 cut(s)	308, 378
SduI	GDGCHC	2 cut(s)	53, 861
SfaNI	GCATC	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	860
SinI	GGWCC	2 cut(s)	139, 255
SlaI	CTCGAG	1 cut(s)	860
SmlI	CTYRAG	4 cut(s)	416, 707, 841, 860
SmoI	CTYRAG	4 cut(s)	416, 707, 841, 860
SphI	GCATGC	2 cut(s)	129, 850
SseBI	AGGCCT	1 cut(s)	566
SsiI	CCGC	8 cut(s)	32, 113, 168, 193, 542, 877, 980, 1029
SspMI	CTAG	4 cut(s)	54, 197, 572, 1060
StuI	AGGCCT	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	306, 376
StyI	CCWWGG	1 cut(s)	831
TaaI	ACNGT	3 cut(s)	106, 218, 596
TaqI	TCGA	4 cut(s)	290, 360, 797, 861
TatI	WGTACW	1 cut(s)	82
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	4 cut(s)	394, 421, 827, 919
Tru1I	TTAA	3 cut(s)	417, 692, 789
Tru9I	TTAA	3 cut(s)	417, 692, 789
TscAI	CASTG	1 cut(s)	991
TseFI	GTSAC	2 cut(s)	533, 986
TseI	GCWGC	2 cut(s)	222, 868
Tsp45I	GTSAC	2 cut(s)	533, 986
TspGWI	ACGGA	2 cut(s)	319, 628
TspRI	CASTG	1 cut(s)	991
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	2 cut(s)	139, 255
XapI	RAATTY	4 cut(s)	493, 891, 934, 963
XceI	RCATGY	3 cut(s)	129, 229, 850
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	860
XspI	CTAG	4 cut(s)	54, 197, 572, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.