Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

71744361 .. 71745998

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG420100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1458 bp

ATGAAAGGTTTGCTATCTCCTTCAATAACACTCCTATCCTCTCTAGAGGTCATAGATCTTGGAGAGCTCGCTGGTCTTTCTGGAACAATCCCAACATCCATAGGGTTTCATCTCCCAAATCTCCGAAAGCTTGTTCTCTATGGCAATAGGCTTTGTGGATCAATACCAGAAAGCATTGGTAAGCTGTCAAACCTTGAAGAACTCGTACTGCATGAGAATAGCAATTCTCTAACTGGTCACATACCACAGAGAATTGGTCAGCTTCAGGTCTTGAAAGAGCTTGATCTTTCAAGCAATCTTTTGGTTGTGGAAATTCCACCTTCAATGGCTAATTTAACTGCCATTTCAGTTATATCCTTGGACACCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGGCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGAGAATTGGTCTCTCTCCAAAGACTTTCCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGATTTACATGGCAGGATGTGGAATCCAAGGGGGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGTATTCCAACTTGGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCACTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCCATAAGTCAAGTTTTCCAGATAAAACAGACATTTCCATTTGAATCATTACTGACGTATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGCAAATTGGTGTAAGACCACAACATGGCATTAAGTTTCTCAATTTATCAAGCAACATGTTGCAAGGGAAATTACCAACATCCATACAGAGATTGGAGTCGCTTGAAAGTATGGATTTGAGTACCAACAAGTTAGGTTTCAACTTGCCGGAGGGCTTGGGAAATTTGAGCAAGTTAGAGACGCTCAACTTGCAGAAAAACCGCTTTAACGGCAGCATTCCAAATGGATTTTTGAAGTTGAGAAAACTGAAGAAATTAGATTTATCAGACAATCTTCTGGTGGGAAAAATCCCAGGAGGCAAACTGAGCGACTTTCCGAAGAGTTCTTACTCCAAAAACAAAGGCTTGTGTGGAAAGCCTCTGAAGCCCTGTAAGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

485

Amino Acids

52.87

Weight (kDa)

8.76

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	138 - 243	3.5e-09	Leucine-rich repeat region
LRR_8	PF13855	140 - 199	8.9e-11	Leucine rich repeat
LRR_8	PF13855	188 - 247	2.1e-07	Leucine rich repeat
LRR_8	PF13855	266 - 324	7e-09	Leucine rich repeat
LRR_14	PF23598	366 - 446	1.6e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1100
AciI	CCGC	1 cut(s)	1276
AclWI	GGATC	3 cut(s)	166, 904, 942
AcoI	YGGCCR	1 cut(s)	601
AcsI	RAATTY	3 cut(s)	312, 553, 1237
AcuI	CTGAAG	4 cut(s)	248, 669, 1343, 1457
AfaI	GTAC	2 cut(s)	207, 1198
AfiI	CCNNNNNNNGG	1 cut(s)	1100
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	1131
AjnI	CCWGG	1 cut(s)	1366
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	3 cut(s)	493, 658, 1247
AlwI	GGATC	3 cut(s)	166, 904, 942
AoxI	GGCC	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	1287
ApoI	RAATTY	3 cut(s)	312, 553, 1237
Asp700I	GAANNNNTTC	1 cut(s)	859
AspS9I	GGNCC	2 cut(s)	380, 674
AsuII	TTCGAA	1 cut(s)	703
AsuNHI	GCTAGC	1 cut(s)	970
AvaII	GGWCC	2 cut(s)	380, 674
BalI	TGGCCA	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	4 cut(s)	189, 221, 1385, 1417
BbsI	GAAGAC	2 cut(s)	408, 687
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	1299
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	1300
BciT130I	CCWGG	1 cut(s)	1368
BcoDI	GTCTC	3 cut(s)	493, 658, 1247
BfaI	CTAG	4 cut(s)	44, 509, 543, 971
BfrI	CTTAAG	1 cut(s)	422
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	1288
BlsI	GCNGC	1 cut(s)	1289
Bme1390I	CCNGG	1 cut(s)	1368
Bme18I	GGWCC	2 cut(s)	380, 674
BmgT120I	GGNCC	2 cut(s)	380, 674
BmiI	GGNNCC	3 cut(s)	381, 771, 979
BmrFI	CCNGG	1 cut(s)	1368
BmtI	GCTAGC	1 cut(s)	974
BpiI	GAAGAC	2 cut(s)	408, 687
Bpu14I	TTCGAA	1 cut(s)	703
BpuEI	CTTGAG	3 cut(s)	395, 545, 1048
BsaI	GGTCTC	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	357, 762, 1366
BsaWI	WCCGGW	1 cut(s)	830
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	1 cut(s)	1100
Bse1I	ACTGG	2 cut(s)	238, 460
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	3 cut(s)	357, 762, 1366
BseGI	GGATG	3 cut(s)	95, 757, 1154
BseLI	CCNNNNNNNGG	1 cut(s)	1100
BseMII	CTCAG	3 cut(s)	595, 647, 1370
BseNI	ACTGG	2 cut(s)	238, 460
BseXI	GCAGC	1 cut(s)	1299
BshFI	GGCC	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	831, 1223
BslFI	GGGAC	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	1100
BsmAI	GTCTC	3 cut(s)	493, 658, 1247
BsmBI	CGTCTC	2 cut(s)	658, 1247
BsmFI	GGGAC	1 cut(s)	393
BsmI	GAATGC	1 cut(s)	1290
BsnI	GGCC	1 cut(s)	603
Bso31I	GGTCTC	1 cut(s)	493
Bsp119I	TTCGAA	1 cut(s)	703
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
BspACI	CCGC	1 cut(s)	1276
BspANI	GGCC	1 cut(s)	603
BspCNI	CTCAG	3 cut(s)	594, 646, 1371
BspLI	GGNNCC	3 cut(s)	381, 771, 979
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	3 cut(s)	166, 904, 942
BspT104I	TTCGAA	1 cut(s)	703
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	493
BsrI	ACTGG	2 cut(s)	238, 460
BssECI	CCNNGG	3 cut(s)	357, 762, 1366
BssMI	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
BssT1I	CCWWGG	2 cut(s)	357, 762
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	1 cut(s)	1058
Bst6I	CTCTTC	1 cut(s)	1388
BstAFI	CTTAAG	1 cut(s)	422
BstBI	TTCGAA	1 cut(s)	703
BstC8I	GCNNGC	3 cut(s)	69, 972, 976
BstDEI	CTNAG	3 cut(s)	581, 633, 1379
BstF5I	GGATG	3 cut(s)	95, 757, 1154
BstKTI	GATC	8 cut(s)	58, 161, 286, 724, 912, 937, 955, 1045
BstMAI	GTCTC	3 cut(s)	493, 658, 1247
BstMBI	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
BstMWI	GCNNNNNNNGC	5 cut(s)	1264, 1284, 1380, 1438, 1447
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	1 cut(s)	1135
BstSCI	CCNGG	1 cut(s)	1366
BstV1I	GCAGC	1 cut(s)	1299
BstV2I	GAAGAC	2 cut(s)	408, 687
BstX2I	RGATCY	2 cut(s)	55, 909
BstYI	RGATCY	2 cut(s)	55, 909
BsuRI	GGCC	1 cut(s)	603
BtsCI	GGATG	3 cut(s)	95, 757, 1154
BtsI	GCAGTG	1 cut(s)	677
BtsIMutI	CAGTG	2 cut(s)	589, 677
Cac8I	GCNNGC	3 cut(s)	69, 972, 976
Cfr13I	GGNCC	2 cut(s)	380, 674
CseI	GACGC	1 cut(s)	1264
Csp6I	GTAC	2 cut(s)	206, 1197
CviAII	CATG	6 cut(s)	212, 744, 959, 1100, 1132, 1455
CviQI	GTAC	2 cut(s)	206, 1197
DdeI	CTNAG	3 cut(s)	581, 633, 1379
DpnI	GATC	8 cut(s)	57, 160, 285, 723, 911, 936, 954, 1044
DpnII	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
EaeI	YGGCCR	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	1388
EarI	CTCTTC	1 cut(s)	1388
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	357, 762
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	493
Eco47I	GGWCC	2 cut(s)	380, 674
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	4 cut(s)	248, 669, 1343, 1457
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	2 cut(s)	357, 762
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	357, 762
Esp3I	CGTCTC	2 cut(s)	658, 1247
FaeI	CATG	6 cut(s)	215, 747, 962, 1103, 1135, 1458
FaqI	GGGAC	1 cut(s)	393
FatI	CATG	6 cut(s)	211, 743, 958, 1099, 1131, 1454
Fnu4HI	GCNGC	1 cut(s)	1288
FokI	GGATG	3 cut(s)	82, 764, 1141
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	1288
FspBI	CTAG	4 cut(s)	44, 509, 543, 971
GluI	GCNGC	1 cut(s)	1288
HaeIII	GGCC	1 cut(s)	603
HapII	CCGG	2 cut(s)	831, 1223
HgaI	GACGC	1 cut(s)	1264
Hin1II	CATG	6 cut(s)	215, 747, 962, 1103, 1135, 1458
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HindIII	AAGCTT	3 cut(s)	128, 400, 521
HinfI	GANTC	7 cut(s)	594, 667, 758, 917, 1022, 1071, 1172
HpaII	CCGG	2 cut(s)	831, 1223
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	9 cut(s)	125, 666, 688, 817, 854, 1051, 1342, 1392, 1437
Hpy188III	TCNNGA	6 cut(s)	44, 81, 271, 374, 773, 997
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	4 cut(s)	30, 330, 693, 710
HpyCH4III	ACNGT	1 cut(s)	1058
HpyCH4IV	ACGT	2 cut(s)	651, 1034
HpyCH4V	TGCA	4 cut(s)	211, 962, 1138, 1267
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1264, 1284, 1380, 1438, 1447
HpyF3I	CTNAG	3 cut(s)	581, 633, 1379
HpySE526I	ACGT	2 cut(s)	651, 1034
Hsp92II	CATG	6 cut(s)	215, 747, 962, 1103, 1135, 1458
Kzo9I	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
LmnI	GCTCC	2 cut(s)	530, 983
Lsp1109I	GCAGC	1 cut(s)	1299
MaeI	CTAG	4 cut(s)	44, 509, 543, 971
MaeII	ACGT	2 cut(s)	651, 1034
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	8 cut(s)	57, 160, 285, 723, 911, 936, 954, 1044
MboI	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
MboII	GAAGA	6 cut(s)	209, 408, 687, 1336, 1340, 1405
MflI	RGATCY	2 cut(s)	55, 909
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	603
MluNI	TGGCCA	1 cut(s)	603
MlyI	GAGTC	2 cut(s)	911, 1181
MmeI	TCCRAC	1 cut(s)	866
Mox20I	TGGCCA	1 cut(s)	603
MroXI	GAANNNNTTC	1 cut(s)	859
MscI	TGGCCA	1 cut(s)	603
MseI	TTAA	5 cut(s)	335, 423, 431, 1107, 1281
Msp20I	TGGCCA	1 cut(s)	603
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	2 cut(s)	831, 1223
MspR9I	CCNGG	1 cut(s)	1368
Mva1269I	GAATGC	1 cut(s)	1290
MvaI	CCWGG	1 cut(s)	1368
MwoI	GCNNNNNNNGC	5 cut(s)	1264, 1284, 1380, 1438, 1447
NdeII	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
NheI	GCTAGC	1 cut(s)	970
NlaIII	CATG	6 cut(s)	215, 747, 962, 1103, 1135, 1458
NlaIV	GGNNCC	3 cut(s)	381, 771, 979
NmeAIII	GCCGAG	1 cut(s)	844
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	1135
NspV	TTCGAA	1 cut(s)	703
PciI	ACATGT	1 cut(s)	1131
PctI	GAATGC	1 cut(s)	1290
PdmI	GAANNNNTTC	1 cut(s)	859
PfeI	GAWTC	5 cut(s)	594, 667, 758, 1022, 1071
PflMI	CCANNNNNTGG	1 cut(s)	1100
PkrI	GCNGC	1 cut(s)	1289
PleI	GAGTC	2 cut(s)	911, 1180
PpsI	GAGTC	2 cut(s)	911, 1180
PscI	ACATGT	1 cut(s)	1131
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	1366
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	3 cut(s)	381, 771, 979
PspPI	GGNCC	2 cut(s)	380, 674
PsuI	RGATCY	2 cut(s)	55, 909
RsaI	GTAC	2 cut(s)	207, 1198
RsaNI	GTAC	2 cut(s)	206, 1197
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	335, 423, 431, 1107, 1281
SatI	GCNGC	1 cut(s)	1288
Sau3AI	GATC	8 cut(s)	55, 158, 283, 721, 909, 934, 952, 1042
Sau96I	GGNCC	2 cut(s)	380, 674
SchI	GAGTC	2 cut(s)	911, 1181
ScrFI	CCNGG	1 cut(s)	1368
SduI	GDGCHC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	703
SinI	GGWCC	2 cut(s)	380, 674
SmlI	CTYRAG	4 cut(s)	374, 422, 524, 1063
SmoI	CTYRAG	4 cut(s)	374, 422, 524, 1063
SsiI	CCGC	1 cut(s)	1276
SspI	AATATT	1 cut(s)	709
SspMI	CTAG	4 cut(s)	44, 509, 543, 971
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	1366
StyI	CCWWGG	2 cut(s)	357, 762
TaaI	ACNGT	1 cut(s)	1058
TaiI	ACGT	2 cut(s)	654, 1037
TaqI	TCGA	4 cut(s)	703, 807, 920, 1074
TfiI	GAWTC	5 cut(s)	594, 667, 758, 1022, 1071
Tru1I	TTAA	5 cut(s)	335, 423, 431, 1107, 1281
Tru9I	TTAA	5 cut(s)	335, 423, 431, 1107, 1281
TscAI	CASTG	2 cut(s)	589, 684
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	1287
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	17, 98
TspRI	CASTG	2 cut(s)	589, 684
Van91I	CCANNNNNTGG	1 cut(s)	1100
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	380, 674
XapI	RAATTY	3 cut(s)	312, 553, 1237
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	1135
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1165
XmnI	GAANNNNTTC	1 cut(s)	859
XspI	CTAG	4 cut(s)	44, 509, 543, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.