Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009010.1

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Forward (+)

6815 .. 7966

Gene Structure 1152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009010.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

atgtcttctcttaagattttaaggcttcaatccaatcatcttactggaaaaataccctccacctttggagaattggtctctctccaaagactttccctagcagataacaagcttgagggagcaattccctctagtttggggaatttatcggctttgagtgatctatacctcagtggcaaccgattctctggccaaataccaaaatcaataggtcaactctctcagcttatattgttgaacgtctctcataatctgattcaaggaccactgccttcagagatgtcttcccttcgaaatattgaaacacttgatctgtcgttcaaccgtttaagcctctcctccataccaaaatgtgttgcggaattgccttctatttccaggatttacatggcaggatgtggaatccaaggggaagttccagagttcttacacaaaactccaatacaagaactcgacttatctgacaacaatcttaccggaagtattccaacttggctcggaaacctttctcggctctacatattgaacctgtccaaaaactcacttgtttcaaagatccctgactcgattactaacttggatcagttggttgtgattgatctccatgcaaacaagctagcaggctccataagtcaagttttccagataaaacagacatttccatttgaatcatcacagacgtatgttgatctatctgataacagtttctcaagtggaatcgagcaaattggtgtaagaccacaacatggcattaagtttctcaatttatcaagcaacatgttgcaagggaaattaccaacatccatacagatattggagtcgcttgaaagtatggatttgagtaccaacaagttaggtttcaacttgccagagggcttaggaaatttgagcaagttagagacgctcaacctgcagaaaaaccgctttaacggcggcattccacatggatttttgaagttgagaaaactgaagaaattagatttatcagacaatcttctggtgggaaaaatcccaggaggcaaactgagcgactttccgaagagttcttactccaaaaacaaaggcttgtgtggaaagcctctgaagacctgtaagcacacgtgtgaacgcgttcgtgtgtttgccgacacaagctccaaacgtgccttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

383

Amino Acids

41.88

Weight (kDa)

9.38

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	918
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccII	CGCG	1 cut(s)	1110
AciI	CCGC	3 cut(s)	359, 922, 933
AclWI	GGATC	2 cut(s)	550, 588
AcoI	YGGCCR	1 cut(s)	190
AcsI	RAATTY	2 cut(s)	142, 883
AcuI	CTGAAG	3 cut(s)	258, 989, 1103
AcvI	CACGTG	1 cut(s)	1101
AfaI	GTAC	1 cut(s)	844
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflII	CTTAAG	1 cut(s)	11
AflIII	ACRYGT	4 cut(s)	777, 1098, 1100, 1108
AjnI	CCWGG	2 cut(s)	377, 1012
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AleI	CACNNNNGTG	1 cut(s)	1101
AluBI	AGCT	4 cut(s)	112, 226, 616, 1134
AluI	AGCT	4 cut(s)	112, 226, 616, 1134
Alw26I	GTCTC	3 cut(s)	82, 247, 893
AlwI	GGATC	2 cut(s)	550, 588
AoxI	GGCC	1 cut(s)	190
ApoI	RAATTY	2 cut(s)	142, 883
Asp700I	GAANNNNTTC	2 cut(s)	505, 1110
AspS9I	GGNCC	1 cut(s)	263
AsuII	TTCGAA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	616
AvaII	GGWCC	1 cut(s)	263
BalI	TGGCCA	1 cut(s)	192
BarI	GAAGNNNNNNTAC	2 cut(s)	1031, 1063
BbrPI	CACGTG	1 cut(s)	1101
BbsI	GAAGAC	2 cut(s)	276, 1091
BceAI	ACGGC	1 cut(s)	946
BciT130I	CCWGG	2 cut(s)	379, 1014
BcoDI	GTCTC	3 cut(s)	82, 247, 893
BfaI	CTAG	3 cut(s)	98, 132, 617
BfmI	CTRYAG	1 cut(s)	911
BfrI	CTTAAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	918
BisI	GCNGC	1 cut(s)	934
BlsI	GCNGC	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	379, 1014
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	625
BmrFI	CCNGG	2 cut(s)	379, 1014
BmtI	GCTAGC	1 cut(s)	620
BpiI	GAAGAC	2 cut(s)	276, 1091
Bpu10I	CCTNAGC	1 cut(s)	877
Bpu14I	TTCGAA	1 cut(s)	292
BpuEI	CTTGAG	2 cut(s)	134, 694
BsaAI	YACGTR	1 cut(s)	1101
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	2 cut(s)	406, 1012
BsaWI	WCCGGW	1 cut(s)	476
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 1118, 1148
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	379, 1014
BseDI	CCNNGG	2 cut(s)	406, 1012
BseGI	GGATG	2 cut(s)	401, 800
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMII	CTCAG	3 cut(s)	184, 236, 1016
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	1 cut(s)	328
Bsh1236I	CGCG	1 cut(s)	1110
BshFI	GGCC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	477
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	3 cut(s)	82, 247, 893
BsmBI	CGTCTC	2 cut(s)	247, 893
BsmI	GAATGC	1 cut(s)	936
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	82
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
BspACI	CCGC	3 cut(s)	359, 922, 933
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	3 cut(s)	183, 235, 1017
BspFNI	CGCG	1 cut(s)	1110
BspLI	GGNNCC	1 cut(s)	625
BspMAI	CTGCAG	1 cut(s)	915
BspMI	ACCTGC	1 cut(s)	918
BspOI	GCTAGC	1 cut(s)	620
BspPI	GGATC	2 cut(s)	550, 588
BspT104I	TTCGAA	1 cut(s)	292
BspTI	CTTAAG	1 cut(s)	11
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	406, 1012
BssMI	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	379, 1014
Bst4CI	ACNGT	2 cut(s)	326, 704
Bst6I	CTCTTC	1 cut(s)	1034
BstAFI	CTTAAG	1 cut(s)	11
BstBAI	YACGTR	1 cut(s)	1101
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	618, 622
BstDEI	CTNAG	4 cut(s)	170, 222, 877, 1025
BstF5I	GGATG	2 cut(s)	401, 800
BstFNI	CGCG	1 cut(s)	1110
BstKTI	GATC	6 cut(s)	163, 313, 558, 583, 601, 691
BstMAI	GTCTC	3 cut(s)	82, 247, 893
BstMBI	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
BstMWI	GCNNNNNNNGC	3 cut(s)	910, 930, 1026
BstNI	CCWGG	2 cut(s)	379, 1014
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	377, 1012
BstSFI	CTRYAG	1 cut(s)	911
BstUI	CGCG	1 cut(s)	1110
BstV2I	GAAGAC	2 cut(s)	276, 1091
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	401, 800
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	178, 266
BveI	ACCTGC	1 cut(s)	918
Cac8I	GCNNGC	2 cut(s)	618, 622
Cfr13I	GGNCC	1 cut(s)	263
CseI	GACGC	1 cut(s)	910
Csp6I	GTAC	1 cut(s)	843
CviAII	CATG	5 cut(s)	388, 605, 746, 778, 944
CviQI	GTAC	1 cut(s)	843
DdeI	CTNAG	4 cut(s)	170, 222, 877, 1025
DpnI	GATC	6 cut(s)	162, 312, 557, 582, 600, 690
DpnII	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	258, 989, 1103
Eco72I	CACGTG	1 cut(s)	1101
EcoRII	CCWGG	2 cut(s)	377, 1012
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
Esp3I	CGTCTC	2 cut(s)	247, 893
FaeI	CATG	5 cut(s)	391, 608, 749, 781, 947
FatI	CATG	5 cut(s)	387, 604, 745, 777, 943
Fnu4HI	GCNGC	1 cut(s)	934
FokI	GGATG	2 cut(s)	408, 787
Fsp4HI	GCNGC	1 cut(s)	934
FspBI	CTAG	3 cut(s)	98, 132, 617
GluI	GCNGC	1 cut(s)	934
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	477
HgaI	GACGC	1 cut(s)	910
Hin1II	CATG	5 cut(s)	391, 608, 749, 781, 947
HincII	GTYRAC	1 cut(s)	215
HindII	GTYRAC	1 cut(s)	215
HindIII	AAGCTT	1 cut(s)	110
HinfI	GANTC	7 cut(s)	183, 256, 402, 563, 668, 717, 818
HpaII	CCGG	1 cut(s)	477
Hpy166II	GTNNAC	2 cut(s)	215, 1106
Hpy188I	TCNGA	8 cut(s)	255, 277, 463, 500, 697, 988, 1038, 1083
Hpy188III	TCNNGA	2 cut(s)	419, 643
Hpy8I	GTNNAC	2 cut(s)	215, 1106
HpyAV	CCTTC	3 cut(s)	282, 299, 378
HpyCH4III	ACNGT	2 cut(s)	326, 704
HpyCH4IV	ACGT	4 cut(s)	240, 680, 1100, 1141
HpyCH4V	TGCA	3 cut(s)	608, 784, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	910, 930, 1026
HpyF3I	CTNAG	4 cut(s)	170, 222, 877, 1025
HpySE526I	ACGT	4 cut(s)	240, 680, 1100, 1141
Hsp92II	CATG	5 cut(s)	391, 608, 749, 781, 947
Kzo9I	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
LmnI	GCTCC	3 cut(s)	119, 629, 1139
MaeI	CTAG	3 cut(s)	98, 132, 617
MaeII	ACGT	4 cut(s)	240, 680, 1100, 1141
MalI	GATC	6 cut(s)	162, 312, 557, 582, 600, 690
MboI	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
MboII	GAAGA	5 cut(s)	276, 982, 986, 1051, 1096
MflI	RGATCY	1 cut(s)	555
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	9 cut(s)	71, 123, 142, 362, 726, 763, 791, 883, 974
MluI	ACGCGT	1 cut(s)	1108
MluNI	TGGCCA	1 cut(s)	192
MlyI	GAGTC	2 cut(s)	557, 827
MmeI	TCCRAC	1 cut(s)	512
MnlI	CCTC	9 cut(s)	67, 109, 139, 179, 344, 349, 865, 1010, 1089
Mox20I	TGGCCA	1 cut(s)	192
MroXI	GAANNNNTTC	2 cut(s)	505, 1110
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	5 cut(s)	12, 20, 329, 753, 927
MslI	CAYNNNNRTG	1 cut(s)	1101
Msp20I	TGGCCA	1 cut(s)	192
MspCI	CTTAAG	1 cut(s)	11
MspI	CCGG	1 cut(s)	477
MspR9I	CCNGG	2 cut(s)	379, 1014
Mva1269I	GAATGC	1 cut(s)	936
MvaI	CCWGG	2 cut(s)	379, 1014
MvnI	CGCG	1 cut(s)	1110
MwoI	GCNNNNNNNGC	3 cut(s)	910, 930, 1026
NdeII	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
NheI	GCTAGC	1 cut(s)	616
NlaIII	CATG	5 cut(s)	391, 608, 749, 781, 947
NlaIV	GGNNCC	1 cut(s)	625
NmeAIII	GCCGAG	1 cut(s)	490
NspI	RCATGY	1 cut(s)	781
NspV	TTCGAA	1 cut(s)	292
OliI	CACNNNNGTG	1 cut(s)	1101
PciI	ACATGT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	936
PdmI	GAANNNNTTC	2 cut(s)	505, 1110
PfeI	GAWTC	5 cut(s)	183, 256, 402, 668, 717
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	377
PkrI	GCNGC	1 cut(s)	935
PleI	GAGTC	2 cut(s)	557, 826
PmaCI	CACGTG	1 cut(s)	1101
PmlI	CACGTG	1 cut(s)	1101
PpsI	GAGTC	2 cut(s)	557, 826
Ppu21I	YACGTR	1 cut(s)	1101
PscI	ACATGT	1 cut(s)	777
Psp6I	CCWGG	2 cut(s)	377, 1012
PspCI	CACGTG	1 cut(s)	1101
PspGI	CCWGG	2 cut(s)	377, 1012
PspN4I	GGNNCC	1 cut(s)	625
PspPI	GGNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	915
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	1 cut(s)	844
RsaNI	GTAC	1 cut(s)	843
RseI	CAYNNNNRTG	1 cut(s)	1101
SaqAI	TTAA	5 cut(s)	12, 20, 329, 753, 927
SatI	GCNGC	1 cut(s)	934
Sau3AI	GATC	6 cut(s)	160, 310, 555, 580, 598, 688
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	557, 827
ScrFI	CCNGG	2 cut(s)	379, 1014
SfcI	CTRYAG	1 cut(s)	911
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	1101
SmlI	CTYRAG	3 cut(s)	11, 113, 709
SmoI	CTYRAG	3 cut(s)	11, 113, 709
Sse9I	AATT	9 cut(s)	71, 123, 142, 362, 726, 763, 791, 883, 974
SsiI	CCGC	3 cut(s)	359, 922, 933
SspI	AATATT	1 cut(s)	298
SspMI	CTAG	3 cut(s)	98, 132, 617
StyD4I	CCNGG	2 cut(s)	377, 1012
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	326, 704
TaiI	ACGT	4 cut(s)	243, 683, 1103, 1144
TaqI	TCGA	4 cut(s)	292, 453, 566, 720
TasI	AATT	9 cut(s)	71, 123, 142, 362, 726, 763, 791, 883, 974
TauI	GCSGC	1 cut(s)	936
TfiI	GAWTC	5 cut(s)	183, 256, 402, 668, 717
Tru1I	TTAA	5 cut(s)	12, 20, 329, 753, 927
Tru9I	TTAA	5 cut(s)	12, 20, 329, 753, 927
TscAI	CASTG	2 cut(s)	178, 273
TspRI	CASTG	2 cut(s)	178, 273
Van91I	CCANNNNNTGG	1 cut(s)	746
Vha464I	CTTAAG	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	2 cut(s)	142, 883
XceI	RCATGY	1 cut(s)	781
XcmI	CCANNNNNNNNNTGG	2 cut(s)	385, 811
XmnI	GAANNNNTTC	2 cut(s)	505, 1110
XspI	CTAG	3 cut(s)	98, 132, 617

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.