Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

68171856 .. 68173046

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG446400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGCTAATTTAACTGCCATTTCAGTTATATCCTTGGACACCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGGCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGAGAATTGGTCTCTCTCCAAAGACTTTCCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGTTTAAGCCTCTCCTCCATACCAAAATGTGTTGCGGAATTGCCTTCTATTTCCAGGATTTACATGGCAGGATGTGGAATCCAAGGGGAAGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGTATTCCAACTTCGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCACTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCCATAAGTCAAGTTTTCCAGATAAAACAGACATTCCCATTTGAATCATCACTGACGTATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGCAAATTGGTGTAGGACCACAACATGGCATTAAGTTTCTCAATTTATCAAGCAACATGTTGCAAGGGAAATTACCAACATCCATACAGAGATTGGAGTCGCTTGAAAGTATGGATTTGAGTACCAACAAGTTAGGTTTCAACTTGCCGGAGGGCTTGGGAAATTTGAGCAAGTTAGAGACGGTCAACTTGCAGAAAAACCGCTTTAACGGCAGCATTCCAAATGGATTTTTGAAGTTGAGAAAACTGAAGAAATTAGATTTATCAGACAATCTTCTGGTGGGAAAAATCCCAGGAGGCAAACTGAGCGACTTTCCGAAGAGTTCTTACTCCAAAAACAAAGGCTTGTGTGGAAAGCCTCTGAAGCCCTGTAAGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

396

Amino Acids

42.92

Weight (kDa)

9.12

Isoelectric Point (pI)

35.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	24 - 67	5.6e-07	Leucine rich repeat
LRR_14	PF23598	29 - 153	7.9e-10	Leucine-rich repeat region
LRR_8	PF13855	32 - 91	7.6e-11	Leucine rich repeat
LRR_8	PF13855	80 - 139	1.2e-07	Leucine rich repeat
LRR_8	PF13855	177 - 235	4.6e-08	Leucine rich repeat
LRR_8	PF13855	254 - 314	5.3e-06	Leucine rich repeat
LRR_14	PF23598	259 - 357	3.3e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	833
AciI	CCGC	2 cut(s)	446, 1009
AclWI	GGATC	2 cut(s)	637, 675
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	229, 970
AcuI	CTGAAG	3 cut(s)	345, 1076, 1190
AfaI	GTAC	1 cut(s)	931
AfiI	CCNNNNNNNGG	1 cut(s)	833
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	864
AjnI	CCWGG	2 cut(s)	464, 1099
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	5 cut(s)	78, 199, 250, 313, 703
AluI	AGCT	5 cut(s)	78, 199, 250, 313, 703
Alw26I	GTCTC	3 cut(s)	169, 334, 980
AlwI	GGATC	2 cut(s)	637, 675
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	1020
ApoI	RAATTY	2 cut(s)	229, 970
Asp700I	GAANNNNTTC	1 cut(s)	592
AspS9I	GGNCC	3 cut(s)	56, 350, 824
AsuII	TTCGAA	1 cut(s)	379
AsuNHI	GCTAGC	1 cut(s)	703
AvaII	GGWCC	3 cut(s)	56, 350, 824
BalI	TGGCCA	1 cut(s)	279
BarI	GAAGNNNNNNTAC	4 cut(s)	562, 594, 1118, 1150
BbsI	GAAGAC	2 cut(s)	84, 363
BbvI	GCAGC	1 cut(s)	1032
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	1033
BciT130I	CCWGG	2 cut(s)	466, 1101
BcoDI	GTCTC	3 cut(s)	169, 334, 980
BfaI	CTAG	3 cut(s)	185, 219, 704
BfrI	CTTAAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	1021
BlsI	GCNGC	1 cut(s)	1022
Bme1390I	CCNGG	2 cut(s)	466, 1101
Bme18I	GGWCC	3 cut(s)	56, 350, 824
BmgT120I	GGNCC	3 cut(s)	56, 350, 824
BmiI	GGNNCC	2 cut(s)	57, 712
BmrFI	CCNGG	2 cut(s)	466, 1101
BmtI	GCTAGC	1 cut(s)	707
BpiI	GAAGAC	2 cut(s)	84, 363
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	71, 221, 781
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	33, 493, 1099
BsaWI	WCCGGW	1 cut(s)	563
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	833
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	466, 1101
BseDI	CCNNGG	3 cut(s)	33, 493, 1099
BseGI	GGATG	2 cut(s)	488, 887
BseLI	CCNNNNNNNGG	1 cut(s)	833
BseMII	CTCAG	3 cut(s)	271, 323, 1103
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	415
BseXI	GCAGC	1 cut(s)	1032
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	564, 956
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	833
BsmAI	GTCTC	3 cut(s)	169, 334, 980
BsmBI	CGTCTC	2 cut(s)	334, 980
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	1023
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	379
Bsp143I	GATC	5 cut(s)	397, 642, 667, 685, 775
BspACI	CCGC	2 cut(s)	446, 1009
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	270, 322, 1104
BspLI	GGNNCC	2 cut(s)	57, 712
BspOI	GCTAGC	1 cut(s)	707
BspPI	GGATC	2 cut(s)	637, 675
BspT104I	TTCGAA	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	33, 493, 1099
BssMI	GATC	5 cut(s)	397, 642, 667, 685, 775
BssT1I	CCWWGG	2 cut(s)	33, 493
Bst2UI	CCWGG	2 cut(s)	466, 1101
Bst4CI	ACNGT	3 cut(s)	413, 791, 991
Bst6I	CTCTTC	1 cut(s)	1121
BstAFI	CTTAAG	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	705, 709
BstDEI	CTNAG	3 cut(s)	257, 309, 1112
BstF5I	GGATG	2 cut(s)	488, 887
BstKTI	GATC	5 cut(s)	400, 645, 670, 688, 778
BstMAI	GTCTC	3 cut(s)	169, 334, 980
BstMBI	GATC	5 cut(s)	397, 642, 667, 685, 775
BstMWI	GCNNNNNNNGC	4 cut(s)	1017, 1113, 1171, 1180
BstNI	CCWGG	2 cut(s)	466, 1101
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	464, 1099
BstV1I	GCAGC	1 cut(s)	1032
BstV2I	GAAGAC	2 cut(s)	84, 363
BstX2I	RGATCY	1 cut(s)	642
BstYI	RGATCY	1 cut(s)	642
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	488, 887
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	3 cut(s)	265, 353, 761
Cac8I	GCNNGC	2 cut(s)	705, 709
Cfr13I	GGNCC	3 cut(s)	56, 350, 824
Csp6I	GTAC	1 cut(s)	930
CviAII	CATG	5 cut(s)	475, 692, 833, 865, 1188
CviQI	GTAC	1 cut(s)	930
DdeI	CTNAG	3 cut(s)	257, 309, 1112
DpnI	GATC	5 cut(s)	399, 644, 669, 687, 777
DpnII	GATC	5 cut(s)	397, 642, 667, 685, 775
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	1121
EarI	CTCTTC	1 cut(s)	1121
Eco130I	CCWWGG	2 cut(s)	33, 493
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	3 cut(s)	56, 350, 824
Eco57I	CTGAAG	3 cut(s)	345, 1076, 1190
EcoRII	CCWGG	2 cut(s)	464, 1099
EcoT14I	CCWWGG	2 cut(s)	33, 493
ErhI	CCWWGG	2 cut(s)	33, 493
Esp3I	CGTCTC	2 cut(s)	334, 980
FaeI	CATG	5 cut(s)	478, 695, 836, 868, 1191
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	474, 691, 832, 864, 1187
Fnu4HI	GCNGC	1 cut(s)	1021
FokI	GGATG	2 cut(s)	495, 874
Fsp4HI	GCNGC	1 cut(s)	1021
FspBI	CTAG	3 cut(s)	185, 219, 704
GluI	GCNGC	1 cut(s)	1021
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	564, 956
Hin1II	CATG	5 cut(s)	478, 695, 836, 868, 1191
HincII	GTYRAC	2 cut(s)	302, 994
HindII	GTYRAC	2 cut(s)	302, 994
HindIII	AAGCTT	2 cut(s)	76, 197
HinfI	GANTC	7 cut(s)	270, 343, 489, 650, 755, 804, 905
HpaII	CCGG	2 cut(s)	564, 956
Hpy166II	GTNNAC	2 cut(s)	302, 994
Hpy188I	TCNGA	8 cut(s)	342, 364, 550, 587, 784, 1075, 1125, 1170
Hpy188III	TCNNGA	3 cut(s)	50, 506, 730
Hpy8I	GTNNAC	2 cut(s)	302, 994
HpyAV	CCTTC	3 cut(s)	369, 386, 465
HpyCH4III	ACNGT	3 cut(s)	413, 791, 991
HpyCH4IV	ACGT	2 cut(s)	327, 767
HpyCH4V	TGCA	3 cut(s)	695, 871, 1000
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1017, 1113, 1171, 1180
HpyF3I	CTNAG	3 cut(s)	257, 309, 1112
HpySE526I	ACGT	2 cut(s)	327, 767
Hsp92II	CATG	5 cut(s)	478, 695, 836, 868, 1191
Kzo9I	GATC	5 cut(s)	397, 642, 667, 685, 775
LmnI	GCTCC	2 cut(s)	206, 716
Lsp1109I	GCAGC	1 cut(s)	1032
MaeI	CTAG	3 cut(s)	185, 219, 704
MaeII	ACGT	2 cut(s)	327, 767
MalI	GATC	5 cut(s)	399, 644, 669, 687, 777
MboI	GATC	5 cut(s)	397, 642, 667, 685, 775
MboII	GAAGA	5 cut(s)	84, 363, 1069, 1073, 1138
MflI	RGATCY	1 cut(s)	642
MlsI	TGGCCA	1 cut(s)	279
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	644, 914
MmeI	TCCRAC	1 cut(s)	599
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	592
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	6 cut(s)	11, 99, 107, 416, 840, 1014
Msp20I	TGGCCA	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	2 cut(s)	564, 956
MspR9I	CCNGG	2 cut(s)	466, 1101
Mva1269I	GAATGC	1 cut(s)	1023
MvaI	CCWGG	2 cut(s)	466, 1101
MwoI	GCNNNNNNNGC	4 cut(s)	1017, 1113, 1171, 1180
NdeII	GATC	5 cut(s)	397, 642, 667, 685, 775
NheI	GCTAGC	1 cut(s)	703
NlaIII	CATG	5 cut(s)	478, 695, 836, 868, 1191
NlaIV	GGNNCC	2 cut(s)	57, 712
NmeAIII	GCCGAG	1 cut(s)	577
NspI	RCATGY	1 cut(s)	868
NspV	TTCGAA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	864
PctI	GAATGC	1 cut(s)	1023
PdmI	GAANNNNTTC	1 cut(s)	592
PfeI	GAWTC	5 cut(s)	270, 343, 489, 755, 804
PflMI	CCANNNNNTGG	1 cut(s)	833
PfoI	TCCNGGA	1 cut(s)	464
PkrI	GCNGC	1 cut(s)	1022
PleI	GAGTC	2 cut(s)	644, 913
PpsI	GAGTC	2 cut(s)	644, 913
PscI	ACATGT	1 cut(s)	864
Psp6I	CCWGG	2 cut(s)	464, 1099
PspGI	CCWGG	2 cut(s)	464, 1099
PspN4I	GGNNCC	2 cut(s)	57, 712
PspPI	GGNCC	3 cut(s)	56, 350, 824
PsuI	RGATCY	1 cut(s)	642
RsaI	GTAC	1 cut(s)	931
RsaNI	GTAC	1 cut(s)	930
SaqAI	TTAA	6 cut(s)	11, 99, 107, 416, 840, 1014
SatI	GCNGC	1 cut(s)	1021
Sau3AI	GATC	5 cut(s)	397, 642, 667, 685, 775
Sau96I	GGNCC	3 cut(s)	56, 350, 824
SchI	GAGTC	2 cut(s)	644, 914
ScrFI	CCNGG	2 cut(s)	466, 1101
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	3 cut(s)	56, 350, 824
SmlI	CTYRAG	4 cut(s)	50, 98, 200, 796
SmoI	CTYRAG	4 cut(s)	50, 98, 200, 796
SsiI	CCGC	2 cut(s)	446, 1009
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	185, 219, 704
StyD4I	CCNGG	2 cut(s)	464, 1099
StyI	CCWWGG	2 cut(s)	33, 493
TaaI	ACNGT	3 cut(s)	413, 791, 991
TaiI	ACGT	2 cut(s)	330, 770
TaqI	TCGA	4 cut(s)	379, 540, 653, 807
TfiI	GAWTC	5 cut(s)	270, 343, 489, 755, 804
Tru1I	TTAA	6 cut(s)	11, 99, 107, 416, 840, 1014
Tru9I	TTAA	6 cut(s)	11, 99, 107, 416, 840, 1014
TscAI	CASTG	3 cut(s)	265, 360, 768
TseI	GCWGC	1 cut(s)	1020
TspRI	CASTG	3 cut(s)	265, 360, 768
Van91I	CCANNNNNTGG	1 cut(s)	833
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	3 cut(s)	56, 350, 824
XapI	RAATTY	2 cut(s)	229, 970
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	2 cut(s)	472, 898
XmnI	GAANNNNTTC	1 cut(s)	592
XspI	CTAG	3 cut(s)	185, 219, 704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.