Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023183.1

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 553

Gene Structure 553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023183.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 424 bp

aacgtcttcagtggagggtttcctggaaaatcatactccgattgacggatcttgaggttctcgacgcctacgacaacgactttattgggagccttccccttgagatcgctagtctcaaaaagctcaaatatctagatcttgccaggagcttcttcaccggagaaattcccagaaattattcaaatattcataacttagaatatttttccctcagcggtaacttgcttgccggaaaactttcggccagcttggctcggttgaataatctcaagggattgcatgtccagtacttaaacaatttcgacaatggaattccacttgaactggggatgttagagtcgttacaagtgcttgacatggctgactatggcctctccggcacgattccaacgactctgggctttttgaagaaccaacttcatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000325 GO:0003002 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009506 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009934 GO:0009987 GO:0010073 GO:0010075 GO:0010080 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022414 GO:0022603 GO:0030054 GO:0032501 GO:0032502 GO:0033612 GO:0036211 GO:0036289 GO:0040008 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048608 GO:0048638 GO:0048731 GO:0048831 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0055044 GO:0061458 GO:0065007 GO:0071704 GO:0071944 GO:0090567 GO:0140096 GO:1901564 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

141

Amino Acids

16.0

Weight (kDa)

7.03

Isoelectric Point (pI)

20.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	164, 311
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	45
AgsI	TTSAA	4 cut(s)	182, 261, 322, 408
AjnI	CCWGG	2 cut(s)	22, 142
AluBI	AGCT	3 cut(s)	123, 149, 248
AluI	AGCT	3 cut(s)	123, 149, 248
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	242, 369
ApoI	RAATTY	2 cut(s)	164, 311
Asp700I	GAANNNNTTC	2 cut(s)	177, 237
AsuHPI	GGTGA	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	211
BciT130I	CCWGG	2 cut(s)	24, 144
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	110, 133
BglI	GCCNNNNNGGC	2 cut(s)	250, 377
BglII	AGATCT	1 cut(s)	135
BmcAI	AGTACT	1 cut(s)	289
Bme1390I	CCNGG	2 cut(s)	24, 144
BmiI	GGNNCC	1 cut(s)	91
BmrFI	CCNGG	2 cut(s)	24, 144
BmrI	ACTGGG	1 cut(s)	334
BmuI	ACTGGG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	211
BpuEI	CTTGAG	3 cut(s)	73, 121, 253
BsaHI	GRCGYC	1 cut(s)	65
BsaWI	WCCGGW	1 cut(s)	157
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	285, 329
BseBI	CCWGG	2 cut(s)	24, 144
BseGI	GGATG	1 cut(s)	335
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	285, 329
BshFI	GGCC	2 cut(s)	244, 371
BsiSI	CCGG	3 cut(s)	158, 230, 377
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmAI	GTCTC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	244, 371
Bsp143I	GATC	3 cut(s)	48, 104, 135
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	2 cut(s)	244, 371
BspCNI	CTCAG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	91
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	2 cut(s)	285, 329
BssMI	GATC	3 cut(s)	48, 104, 135
BssNI	GRCGYC	1 cut(s)	65
Bst2UI	CCWGG	2 cut(s)	24, 144
BstACI	GRCGYC	1 cut(s)	65
BstC8I	GCNNGC	2 cut(s)	227, 246
BstDEI	CTNAG	2 cut(s)	195, 211
BstF5I	GGATG	1 cut(s)	335
BstKTI	GATC	3 cut(s)	51, 107, 138
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	48, 104, 135
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 377
BstNI	CCWGG	2 cut(s)	24, 144
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	22, 142
BstX2I	RGATCY	2 cut(s)	48, 135
BstYI	RGATCY	2 cut(s)	48, 135
BsuRI	GGCC	2 cut(s)	244, 371
BtsCI	GGATG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	16
Cac8I	GCNNGC	2 cut(s)	227, 246
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	280, 357
CviJI	RGCY	9 cut(s)	92, 123, 149, 244, 248, 253, 361, 371, 401
CviKI_1	RGCY	9 cut(s)	92, 123, 149, 244, 248, 253, 361, 371, 401
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	195, 211
DpnI	GATC	3 cut(s)	50, 106, 137
DpnII	GATC	3 cut(s)	48, 104, 135
EaeI	YGGCCR	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	311
EcoRII	CCWGG	2 cut(s)	22, 142
FaeI	CATG	2 cut(s)	283, 360
FaiI	YATR	5 cut(s)	34, 191, 281, 358, 368
FatI	CATG	2 cut(s)	279, 356
FokI	GGATG	1 cut(s)	342
FspBI	CTAG	2 cut(s)	110, 133
HaeIII	GGCC	2 cut(s)	244, 371
HapII	CCGG	3 cut(s)	158, 230, 377
HgaI	GACGC	1 cut(s)	73
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	283, 360
HinfI	GANTC	3 cut(s)	337, 384, 393
HpaII	CCGG	3 cut(s)	158, 230, 377
HphI	GGTGA	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	52, 61, 133
Hpy99I	CGWCG	1 cut(s)	67
HpyAV	CCTTC	1 cut(s)	103
HpyCH4IV	ACGT	1 cut(s)	3
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 377
HpyF3I	CTNAG	2 cut(s)	195, 211
HpySE526I	ACGT	1 cut(s)	3
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	2 cut(s)	283, 360
Kzo9I	GATC	3 cut(s)	48, 104, 135
LmnI	GCTCC	2 cut(s)	89, 146
MaeI	CTAG	2 cut(s)	110, 133
MaeII	ACGT	1 cut(s)	3
MaeIII	GTNAC	2 cut(s)	217, 341
MalI	GATC	3 cut(s)	50, 106, 137
MboI	GATC	3 cut(s)	48, 104, 135
MboII	GAAGA	2 cut(s)	144, 420
MflI	RGATCY	2 cut(s)	48, 135
MluCI	AATT	4 cut(s)	164, 174, 297, 311
MlyI	GAGTC	2 cut(s)	346, 387
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	4 cut(s)	8, 48, 220, 382
MroXI	GAANNNNTTC	2 cut(s)	177, 237
MseI	TTAA	1 cut(s)	292
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	3 cut(s)	158, 230, 377
MspR9I	CCNGG	2 cut(s)	24, 144
MvaI	CCWGG	2 cut(s)	24, 144
MwoI	GCNNNNNNNGC	2 cut(s)	250, 377
NdeII	GATC	3 cut(s)	48, 104, 135
NlaIII	CATG	2 cut(s)	283, 360
NlaIV	GGNNCC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 388
PdmI	GAANNNNTTC	2 cut(s)	177, 237
PfeI	GAWTC	1 cut(s)	384
PfoI	TCCNGGA	1 cut(s)	22
PleI	GAGTC	2 cut(s)	345, 387
PpsI	GAGTC	2 cut(s)	345, 387
Psp6I	CCWGG	2 cut(s)	22, 142
PspGI	CCWGG	2 cut(s)	22, 142
PspN4I	GGNNCC	1 cut(s)	91
PsuI	RGATCY	2 cut(s)	48, 135
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	292
Sau3AI	GATC	3 cut(s)	48, 104, 135
ScaI	AGTACT	1 cut(s)	289
SchI	GAGTC	2 cut(s)	346, 387
ScrFI	CCNGG	2 cut(s)	24, 144
SetI	ASST	5 cut(s)	6, 59, 125, 151, 250
SmlI	CTYRAG	3 cut(s)	52, 100, 268
SmoI	CTYRAG	3 cut(s)	52, 100, 268
Sse9I	AATT	4 cut(s)	164, 174, 297, 311
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	2 cut(s)	186, 202
SspMI	CTAG	2 cut(s)	110, 133
StyD4I	CCNGG	2 cut(s)	22, 142
TaiI	ACGT	1 cut(s)	6
TaqI	TCGA	2 cut(s)	62, 302
TasI	AATT	4 cut(s)	164, 174, 297, 311
TatI	WGTACW	1 cut(s)	287
TfiI	GAWTC	1 cut(s)	384
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TscAI	CASTG	1 cut(s)	16
TspDTI	ATGAA	2 cut(s)	178, 409
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	16
XapI	RAATTY	2 cut(s)	164, 311
XbaI	TCTAGA	1 cut(s)	132
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	177, 237
XspI	CTAG	2 cut(s)	110, 133
ZrmI	AGTACT	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.