Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

53186013 .. 53188676

Gene Structure 2664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCCATCGAGGTGTGCTCGGAGATTTCCAGCCCCGTATTTAGTCCAAGGATTTCGTTTTCTCATGATCTCGACAAGGCAAACGTTACGGTGACAAAAGAAGAGCAGCCACAACAACGGTTAGACTCATCTCTGGTGGATTCAAGTTCTGATTTCGACTTCTGCATAGTCAATAATATCAAGCTAGAGCTGTCTTCGGCCGACGAGCTTTTCTCCAATGGCAAGATTCTTCCTGTCCAAATCAAGCCAAATCCCAACACCACCGCTACCAAAGAAGCCCTTCTTCAGCCTCCTCATCAATCCGCAACAAAGAACACAGAGAAAAAGAGACTGAAGGAGTTCTTAGACGACAGCAATGCCGAAGATGAAACTAATGAAAATGATGAGAAGCCTGCGATTGCAAAGCCCTCCTGGCAGTTCAGGAGAAGCAGCAGCCTCAATTTCGATAGTACTACTACTGCTCGCGGTATGAGCTTCATCCGATCACTCCATTTTCTTTCGAGAAGCAACTCAACCGGATCAGCTCCAAATCCAAAGCAAACAGTTACCCCAAATCAGAAGCAGCAGCATTTGCGGAAAAACCAATCTACCAACTCAAGAAGAAGATCATCATCAGCATGTTCAAGTAGCACTACATATTATCCTTACAACACCTCACCGCGGTCACAAAAGCCTTCGTTAAGGAAGAGTGGATCTTACGGCAATGGGGTAAGAATTAGTCCAGTCCTGAATCTCCCACCACCTTACATTTCAAAAGTTACCGTGAGTTTTTTCGGGTTCGGATCTCTCTTCTGTAATGGTAAGTTGAAAAGGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

274

Amino Acids

30.52

Weight (kDa)

9.72

Isoelectric Point (pI)

64.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	465, 661
AciI	CCGC	6 cut(s)	264, 303, 465, 574, 659, 661
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	3 cut(s)	526, 700, 790
AcoI	YGGCCR	2 cut(s)	3, 198
AcuI	CTGAAG	2 cut(s)	269, 353
AfaI	GTAC	1 cut(s)	451
AfiI	CCNNNNNNNGG	1 cut(s)	660
AgsI	TTSAA	4 cut(s)	144, 624, 753, 808
AjnI	CCWGG	1 cut(s)	410
AluBI	AGCT	5 cut(s)	184, 190, 208, 474, 524
AluI	AGCT	5 cut(s)	184, 190, 208, 474, 524
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	526, 700, 790
AoxI	GGCC	2 cut(s)	3, 198
ApeKI	GCWGC	5 cut(s)	106, 429, 432, 562, 565
Asp700I	GAANNNNTTC	2 cut(s)	279, 338
AsuHPI	GGTGA	2 cut(s)	103, 648
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	186
Bbv12I	GWGCWC	1 cut(s)	20
BbvI	GCAGC	5 cut(s)	118, 441, 444, 574, 577
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	715
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	412
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	185
BglI	GCCNNNNNGGC	1 cut(s)	412
BisI	GCNGC	5 cut(s)	107, 430, 433, 563, 566
BlsI	GCNGC	5 cut(s)	108, 431, 434, 564, 567
BmcAI	AGTACT	1 cut(s)	451
Bme1390I	CCNGG	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	412
BpiI	GAAGAC	1 cut(s)	186
BplI	GAGNNNNNCTC	3 cut(s)	34, 197, 229
BpuEI	CTTGAG	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	610
BsaJI	CCNNGG	2 cut(s)	47, 659
BsaWI	WCCGGW	1 cut(s)	515
Bsc4I	CCNNNNNNNGG	1 cut(s)	660
Bse1I	ACTGG	1 cut(s)	722
Bse3DI	GCAATG	2 cut(s)	361, 709
Bse8I	GATNNNNATC	1 cut(s)	610
BseBI	CCWGG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	47, 659
BseGI	GGATG	1 cut(s)	477
BseJI	GATNNNNATC	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	660
BseMI	GCAATG	2 cut(s)	361, 709
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	1 cut(s)	282
BseX3I	CGGCCG	1 cut(s)	198
BseXI	GCAGC	5 cut(s)	118, 441, 444, 574, 577
Bsh1236I	CGCG	2 cut(s)	465, 661
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	5, 200
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	1 cut(s)	20
BsiSI	CCGG	1 cut(s)	516
BslI	CCNNNNNNNGG	1 cut(s)	660
BsmAI	GTCTC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	5, 200
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
BspACI	CCGC	6 cut(s)	264, 303, 465, 574, 659, 661
BspANI	GGCC	2 cut(s)	5, 200
BspFNI	CGCG	2 cut(s)	465, 661
BspHI	TCATGA	1 cut(s)	64
BspPI	GGATC	3 cut(s)	526, 700, 790
BspQI	GCTCTTC	1 cut(s)	96
BsrDI	GCAATG	2 cut(s)	361, 709
BsrI	ACTGG	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	47, 659
BssMI	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	412
Bst4CI	ACNGT	4 cut(s)	91, 120, 544, 763
Bst6I	CTCTTC	3 cut(s)	96, 680, 794
BstAPI	GCANNNNNTGC	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	393, 463
BstDEI	CTNAG	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	659
BstF5I	GGATG	1 cut(s)	477
BstFNI	CGCG	2 cut(s)	465, 661
BstKTI	GATC	6 cut(s)	70, 485, 521, 608, 695, 785
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	412, 471, 571
BstNI	CCWGG	1 cut(s)	412
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	1 cut(s)	410
BstUI	CGCG	2 cut(s)	465, 661
BstV1I	GCAGC	5 cut(s)	118, 441, 444, 574, 577
BstV2I	GAAGAC	1 cut(s)	186
BstX2I	RGATCY	2 cut(s)	692, 782
BstYI	RGATCY	2 cut(s)	692, 782
BstZI	CGGCCG	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	5, 200
BtgI	CCRYGG	1 cut(s)	659
BtsCI	GGATG	1 cut(s)	477
Cac8I	GCNNGC	2 cut(s)	393, 463
CciI	TCATGA	1 cut(s)	64
Cfr42I	CCGCGG	1 cut(s)	662
Csp6I	GTAC	1 cut(s)	450
CviAII	CATG	2 cut(s)	65, 618
CviQI	GTAC	1 cut(s)	450
DdeI	CTNAG	1 cut(s)	343
DpnI	GATC	6 cut(s)	69, 484, 520, 607, 694, 784
DpnII	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
EaeI	YGGCCR	2 cut(s)	3, 198
EagI	CGGCCG	1 cut(s)	198
Eam1104I	CTCTTC	3 cut(s)	96, 680, 794
EarI	CTCTTC	3 cut(s)	96, 680, 794
EclXI	CGGCCG	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	47
Eco52I	CGGCCG	1 cut(s)	198
Eco57I	CTGAAG	2 cut(s)	269, 353
EcoRII	CCWGG	1 cut(s)	410
EcoT14I	CCWWGG	1 cut(s)	47
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	68, 621
FaiI	YATR	5 cut(s)	66, 167, 470, 619, 637
FalI	AAGNNNNNCTT	6 cut(s)	264, 296, 267, 299, 326, 358
FatI	CATG	2 cut(s)	64, 617
Fnu4HI	GCNGC	5 cut(s)	107, 430, 433, 563, 566
FokI	GGATG	1 cut(s)	464
Fsp4HI	GCNGC	5 cut(s)	107, 430, 433, 563, 566
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	5 cut(s)	107, 430, 433, 563, 566
HaeIII	GGCC	2 cut(s)	5, 200
HapII	CCGG	1 cut(s)	516
Hin1II	CATG	2 cut(s)	68, 621
HinfI	GANTC	4 cut(s)	125, 140, 226, 730
HpaII	CCGG	1 cut(s)	516
HphI	GGTGA	2 cut(s)	103, 648
Hpy188I	TCNGA	5 cut(s)	22, 151, 482, 558, 782
Hpy188III	TCNNGA	6 cut(s)	65, 71, 421, 501, 597, 727
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	3 cut(s)	290, 328, 684
HpyCH4III	ACNGT	4 cut(s)	91, 120, 544, 763
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	165, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	412, 471, 571
HpyF3I	CTNAG	1 cut(s)	343
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	68, 621
KspI	CCGCGG	1 cut(s)	662
Kzo9I	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
LguI	GCTCTTC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	529
Lsp1109I	GCAGC	5 cut(s)	118, 441, 444, 574, 577
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	5 cut(s)	85, 91, 544, 663, 757
MalI	GATC	6 cut(s)	69, 484, 520, 607, 694, 784
MboI	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
MboII	GAAGA	9 cut(s)	113, 186, 221, 275, 374, 612, 615, 697, 781
MflI	RGATCY	2 cut(s)	692, 782
MhlI	GDGCHC	1 cut(s)	20
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	439, 714
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	6 cut(s)	4, 300, 303, 418, 446, 664
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	279, 338
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	680
MslI	CAYNNNNRTG	2 cut(s)	11, 616
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	661
MspI	CCGG	1 cut(s)	516
MspR9I	CCNGG	1 cut(s)	412
MvaI	CCWGG	1 cut(s)	412
MvnI	CGCG	2 cut(s)	465, 661
MwoI	GCNNNNNNNGC	3 cut(s)	412, 471, 571
NdeII	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
NlaIII	CATG	2 cut(s)	68, 621
NmuCI	GTSAC	2 cut(s)	91, 663
NspI	RCATGY	1 cut(s)	621
PagI	TCATGA	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	279, 338
PfeI	GAWTC	3 cut(s)	140, 226, 730
PkrI	GCNGC	5 cut(s)	108, 431, 434, 564, 567
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp1406I	AACGTT	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	692, 782
RsaI	GTAC	1 cut(s)	451
RsaNI	GTAC	1 cut(s)	450
RseI	CAYNNNNRTG	2 cut(s)	11, 616
SacII	CCGCGG	1 cut(s)	662
SapI	GCTCTTC	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	680
SatI	GCNGC	5 cut(s)	107, 430, 433, 563, 566
Sau3AI	GATC	6 cut(s)	67, 482, 518, 605, 692, 782
ScaI	AGTACT	1 cut(s)	451
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	412
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	9 cut(s)	15, 87, 186, 192, 210, 476, 526, 656, 745
Sfr303I	CCGCGG	1 cut(s)	662
SgrBI	CCGCGG	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	11, 616
SmlI	CTYRAG	1 cut(s)	595
SmoI	CTYRAG	1 cut(s)	595
Sse9I	AATT	2 cut(s)	439, 714
SsiI	CCGC	6 cut(s)	264, 303, 465, 574, 659, 661
SspMI	CTAG	1 cut(s)	185
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	47
TaaI	ACNGT	4 cut(s)	91, 120, 544, 763
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	5 cut(s)	9, 72, 156, 444, 500
TasI	AATT	2 cut(s)	439, 714
TatI	WGTACW	1 cut(s)	449
TfiI	GAWTC	3 cut(s)	140, 226, 730
Tru1I	TTAA	1 cut(s)	680
Tru9I	TTAA	1 cut(s)	680
TseFI	GTSAC	2 cut(s)	91, 663
TseI	GCWGC	5 cut(s)	106, 429, 432, 562, 565
Tsp45I	GTSAC	2 cut(s)	91, 663
TspDTI	ATGAA	3 cut(s)	381, 390, 466
XceI	RCATGY	1 cut(s)	621
XmnI	GAANNNNTTC	2 cut(s)	279, 338
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.