Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

57436142 .. 57437330

Gene Structure 1189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG431800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCTAATTTAACTGCCATTTCAGTTATATCCTTGGACACCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGGCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGAGAATTGGTCTCTCTCCAAAGACTTTCCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGATTTACATGGCAGGATGTGGAATCCAAGGGGGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGTATTCCAACTTGGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCACTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCCATAAGTCAAGTTTTCCAGATAAAACAGACATTTCCATTTGAATCATTACTGACGTATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGCAAATTGGTGTAAGACCACAACATGGCATTAAGTTTCTCAATTTATCAAGCAACATGTTGCAAGGGAAATTACCAACATCCATACAGAGATTGGAGTCGCTTGAAAGTATGGATTTGAGTACCAACAAGTTAGGTTTCAACTTGCCGGAGGGCTTGGGAAATTTGAGCAAGTTAGAGACGCTCAACTTGCAGAAAAACCGCTTTAACGGCAGCATTCCAAATGGATTTTTGAAGTTGAGAAAACTGAAGAAATTAGATTTATCAGACAATCTTCTGGTGGGAAAAATCCCAGGAGGCAAACTGAGCGACTTTCCGAAGAGTTCTTACTCCAAAAACAAAGGCTTGTGTGGAAAGCCTCTGAAGCCCTGTAAGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

377

Amino Acids

41.33

Weight (kDa)

9.25

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	24 - 67	5.7e-07	Leucine rich repeat
LRR_14	PF23598	29 - 135	1.9e-09	Leucine-rich repeat region
LRR_8	PF13855	32 - 91	7.8e-11	Leucine rich repeat
LRR_8	PF13855	80 - 139	1.4e-07	Leucine rich repeat
LRR_8	PF13855	158 - 216	4.9e-09	Leucine rich repeat
LRR_8	PF13855	236 - 295	1e-05	Leucine rich repeat
LRR_14	PF23598	251 - 338	8.7e-08	Leucine-rich repeat region
LRR_8	PF13855	304 - 343	9.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	776
AciI	CCGC	1 cut(s)	952
AclWI	GGATC	2 cut(s)	580, 618
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	229, 913
AcuI	CTGAAG	3 cut(s)	345, 1019, 1133
AfaI	GTAC	1 cut(s)	874
AfiI	CCNNNNNNNGG	1 cut(s)	776
AflII	CTTAAG	1 cut(s)	98
AflIII	ACRYGT	1 cut(s)	807
AjnI	CCWGG	1 cut(s)	1042
AluBI	AGCT	5 cut(s)	78, 199, 250, 313, 646
AluI	AGCT	5 cut(s)	78, 199, 250, 313, 646
Alw26I	GTCTC	3 cut(s)	169, 334, 923
AlwI	GGATC	2 cut(s)	580, 618
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	1 cut(s)	963
ApoI	RAATTY	2 cut(s)	229, 913
Asp700I	GAANNNNTTC	1 cut(s)	535
AspS9I	GGNCC	2 cut(s)	56, 350
AsuII	TTCGAA	1 cut(s)	379
AsuNHI	GCTAGC	1 cut(s)	646
AvaII	GGWCC	2 cut(s)	56, 350
BalI	TGGCCA	1 cut(s)	279
BarI	GAAGNNNNNNTAC	2 cut(s)	1061, 1093
BbsI	GAAGAC	2 cut(s)	84, 363
BbvI	GCAGC	1 cut(s)	975
BccI	CCATC	1 cut(s)	79
BceAI	ACGGC	1 cut(s)	976
BciT130I	CCWGG	1 cut(s)	1044
BcoDI	GTCTC	3 cut(s)	169, 334, 923
BfaI	CTAG	3 cut(s)	185, 219, 647
BfrI	CTTAAG	1 cut(s)	98
BisI	GCNGC	1 cut(s)	964
BlsI	GCNGC	1 cut(s)	965
Bme1390I	CCNGG	1 cut(s)	1044
Bme18I	GGWCC	2 cut(s)	56, 350
BmgT120I	GGNCC	2 cut(s)	56, 350
BmiI	GGNNCC	3 cut(s)	57, 447, 655
BmrFI	CCNGG	1 cut(s)	1044
BmtI	GCTAGC	1 cut(s)	650
BpiI	GAAGAC	2 cut(s)	84, 363
Bpu14I	TTCGAA	1 cut(s)	379
BpuEI	CTTGAG	3 cut(s)	71, 221, 724
BsaI	GGTCTC	1 cut(s)	169
BsaJI	CCNNGG	3 cut(s)	33, 438, 1042
BsaWI	WCCGGW	1 cut(s)	506
BsaXI	ACNNNNNCTCC	2 cut(s)	147, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	776
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	1044
BseDI	CCNNGG	3 cut(s)	33, 438, 1042
BseGI	GGATG	2 cut(s)	433, 830
BseLI	CCNNNNNNNGG	1 cut(s)	776
BseMII	CTCAG	3 cut(s)	271, 323, 1046
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	975
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	507, 899
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	776
BsmAI	GTCTC	3 cut(s)	169, 334, 923
BsmBI	CGTCTC	2 cut(s)	334, 923
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	966
BsnI	GGCC	1 cut(s)	279
Bso31I	GGTCTC	1 cut(s)	169
Bsp119I	TTCGAA	1 cut(s)	379
Bsp143I	GATC	5 cut(s)	397, 585, 610, 628, 718
BspACI	CCGC	1 cut(s)	952
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	270, 322, 1047
BspLI	GGNNCC	3 cut(s)	57, 447, 655
BspOI	GCTAGC	1 cut(s)	650
BspPI	GGATC	2 cut(s)	580, 618
BspT104I	TTCGAA	1 cut(s)	379
BspTI	CTTAAG	1 cut(s)	98
BspTNI	GGTCTC	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	3 cut(s)	33, 438, 1042
BssMI	GATC	5 cut(s)	397, 585, 610, 628, 718
BssT1I	CCWWGG	2 cut(s)	33, 438
Bst2UI	CCWGG	1 cut(s)	1044
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	1 cut(s)	1064
BstAFI	CTTAAG	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	379
BstC8I	GCNNGC	2 cut(s)	648, 652
BstDEI	CTNAG	3 cut(s)	257, 309, 1055
BstF5I	GGATG	2 cut(s)	433, 830
BstKTI	GATC	5 cut(s)	400, 588, 613, 631, 721
BstMAI	GTCTC	3 cut(s)	169, 334, 923
BstMBI	GATC	5 cut(s)	397, 585, 610, 628, 718
BstMWI	GCNNNNNNNGC	5 cut(s)	940, 960, 1056, 1114, 1123
BstNI	CCWGG	1 cut(s)	1044
BstNSI	RCATGY	1 cut(s)	811
BstSCI	CCNGG	1 cut(s)	1042
BstV1I	GCAGC	1 cut(s)	975
BstV2I	GAAGAC	2 cut(s)	84, 363
BstX2I	RGATCY	1 cut(s)	585
BstYI	RGATCY	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	2 cut(s)	433, 830
BtsI	GCAGTG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	265, 353
Cac8I	GCNNGC	2 cut(s)	648, 652
Cfr13I	GGNCC	2 cut(s)	56, 350
CseI	GACGC	1 cut(s)	940
Csp6I	GTAC	1 cut(s)	873
CviAII	CATG	5 cut(s)	420, 635, 776, 808, 1131
CviQI	GTAC	1 cut(s)	873
DdeI	CTNAG	3 cut(s)	257, 309, 1055
DpnI	GATC	5 cut(s)	399, 587, 612, 630, 720
DpnII	GATC	5 cut(s)	397, 585, 610, 628, 718
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	1064
EarI	CTCTTC	1 cut(s)	1064
Eco130I	CCWWGG	2 cut(s)	33, 438
Eco31I	GGTCTC	1 cut(s)	169
Eco47I	GGWCC	2 cut(s)	56, 350
Eco57I	CTGAAG	3 cut(s)	345, 1019, 1133
EcoRII	CCWGG	1 cut(s)	1042
EcoT14I	CCWWGG	2 cut(s)	33, 438
ErhI	CCWWGG	2 cut(s)	33, 438
Esp3I	CGTCTC	2 cut(s)	334, 923
FaeI	CATG	5 cut(s)	423, 638, 779, 811, 1134
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	419, 634, 775, 807, 1130
Fnu4HI	GCNGC	1 cut(s)	964
FokI	GGATG	2 cut(s)	440, 817
Fsp4HI	GCNGC	1 cut(s)	964
FspBI	CTAG	3 cut(s)	185, 219, 647
GluI	GCNGC	1 cut(s)	964
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	507, 899
HgaI	GACGC	1 cut(s)	940
Hin1II	CATG	5 cut(s)	423, 638, 779, 811, 1134
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	76, 197
HinfI	GANTC	7 cut(s)	270, 343, 434, 593, 698, 747, 848
HpaII	CCGG	2 cut(s)	507, 899
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	8 cut(s)	342, 364, 493, 530, 727, 1018, 1068, 1113
Hpy188III	TCNNGA	3 cut(s)	50, 449, 673
Hpy8I	GTNNAC	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	369, 386
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	2 cut(s)	327, 710
HpyCH4V	TGCA	3 cut(s)	638, 814, 943
HpyF10VI	GCNNNNNNNGC	5 cut(s)	940, 960, 1056, 1114, 1123
HpyF3I	CTNAG	3 cut(s)	257, 309, 1055
HpySE526I	ACGT	2 cut(s)	327, 710
Hsp92II	CATG	5 cut(s)	423, 638, 779, 811, 1134
Kzo9I	GATC	5 cut(s)	397, 585, 610, 628, 718
LmnI	GCTCC	2 cut(s)	206, 659
Lsp1109I	GCAGC	1 cut(s)	975
MaeI	CTAG	3 cut(s)	185, 219, 647
MaeII	ACGT	2 cut(s)	327, 710
MalI	GATC	5 cut(s)	399, 587, 612, 630, 720
MboI	GATC	5 cut(s)	397, 585, 610, 628, 718
MboII	GAAGA	5 cut(s)	84, 363, 1012, 1016, 1081
MflI	RGATCY	1 cut(s)	585
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	9 cut(s)	7, 158, 210, 229, 756, 793, 821, 913, 1004
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	2 cut(s)	587, 857
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	8 cut(s)	46, 154, 196, 226, 266, 895, 1040, 1119
Mox20I	TGGCCA	1 cut(s)	279
MroXI	GAANNNNTTC	1 cut(s)	535
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	5 cut(s)	11, 99, 107, 783, 957
Msp20I	TGGCCA	1 cut(s)	279
MspCI	CTTAAG	1 cut(s)	98
MspI	CCGG	2 cut(s)	507, 899
MspR9I	CCNGG	1 cut(s)	1044
Mva1269I	GAATGC	1 cut(s)	966
MvaI	CCWGG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	5 cut(s)	940, 960, 1056, 1114, 1123
NdeII	GATC	5 cut(s)	397, 585, 610, 628, 718
NheI	GCTAGC	1 cut(s)	646
NlaIII	CATG	5 cut(s)	423, 638, 779, 811, 1134
NlaIV	GGNNCC	3 cut(s)	57, 447, 655
NmeAIII	GCCGAG	1 cut(s)	520
NspI	RCATGY	1 cut(s)	811
NspV	TTCGAA	1 cut(s)	379
PciI	ACATGT	1 cut(s)	807
PctI	GAATGC	1 cut(s)	966
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	5 cut(s)	270, 343, 434, 698, 747
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	1 cut(s)	965
PleI	GAGTC	2 cut(s)	587, 856
PpsI	GAGTC	2 cut(s)	587, 856
PscI	ACATGT	1 cut(s)	807
Psp6I	CCWGG	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	1042
PspN4I	GGNNCC	3 cut(s)	57, 447, 655
PspPI	GGNCC	2 cut(s)	56, 350
PsuI	RGATCY	1 cut(s)	585
RsaI	GTAC	1 cut(s)	874
RsaNI	GTAC	1 cut(s)	873
SaqAI	TTAA	5 cut(s)	11, 99, 107, 783, 957
SatI	GCNGC	1 cut(s)	964
Sau3AI	GATC	5 cut(s)	397, 585, 610, 628, 718
Sau96I	GGNCC	2 cut(s)	56, 350
SchI	GAGTC	2 cut(s)	587, 857
ScrFI	CCNGG	1 cut(s)	1044
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	2 cut(s)	56, 350
SmlI	CTYRAG	4 cut(s)	50, 98, 200, 739
SmoI	CTYRAG	4 cut(s)	50, 98, 200, 739
Sse9I	AATT	9 cut(s)	7, 158, 210, 229, 756, 793, 821, 913, 1004
SsiI	CCGC	1 cut(s)	952
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	3 cut(s)	185, 219, 647
StyD4I	CCNGG	1 cut(s)	1042
StyI	CCWWGG	2 cut(s)	33, 438
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	2 cut(s)	330, 713
TaqI	TCGA	4 cut(s)	379, 483, 596, 750
TasI	AATT	9 cut(s)	7, 158, 210, 229, 756, 793, 821, 913, 1004
TfiI	GAWTC	5 cut(s)	270, 343, 434, 698, 747
Tru1I	TTAA	5 cut(s)	11, 99, 107, 783, 957
Tru9I	TTAA	5 cut(s)	11, 99, 107, 783, 957
TscAI	CASTG	2 cut(s)	265, 360
TseI	GCWGC	1 cut(s)	963
TspRI	CASTG	2 cut(s)	265, 360
Van91I	CCANNNNNTGG	1 cut(s)	776
Vha464I	CTTAAG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	56, 350
XapI	RAATTY	2 cut(s)	229, 913
XceI	RCATGY	1 cut(s)	811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	535
XspI	CTAG	3 cut(s)	185, 219, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.