RLG00000005764

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
1559973 .. 1561523
1551 bp
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UTR
Exon/CDS
Intron
RLM00000005764

Sequence Viewer

Length: 1551 bp
ATGAAGATTGAGTTGCTGTGGGCTGTACTCTTCACTATCTCAACTACTGGAGAAGGAAGAAGTACTAGCAATGCCTGCGACTCCATTGACCTGAAAGGCCTAACCATTTTCAAGTCTAGAATTCACGTCGACACTTCAGGCCGGCCAGATAGTAGGTCCAATGAAACCAGTTGTTGCAAGTGGAAAGGCATTTCTTGTGACAATAGAACAGGCAGAGTCACAGAGATCAATCTACCAGGGTTAATTACAGCAGAGGATGCTCCTATCCAAGCCGAAATGAAAGGTTTGCTATCTCCTTCAATAACACTCCTATCCTCTCTAGAGGTCATAGATCTTGGAGAGCTCACTGGTCTTTCTGGAACAATCCCAACATCCATAGGGCTTCATCTCCCAAATCTCCGAAAGCTTGTTCTCTATGGCAATAGGCTTTGTGGATCAATACCAGATAGCACTGGTAAGCTGTCAAACCTTGAAGAACTTGTACTGCATGAGAATAGGTTTTCTGGGTCACTCCCACCAAGCCTTGGGAACCTTAAGAATCTACATAGGCTACTTCTTCAGTCAAACCAATTTGTGGGTAGTATACCTGATTCATTTTCAAATTTGACAAATTTGGTTCATCTTGATCTTTCTAGCAATTCTCTAACTGGTCACTTACCACAGAGAATTGGTCAGCTTCAGGTCTTGAAAGAGCTTGATCTTTCAAGCAATCTTTTGGTTGGGGAAATTCCACCTTCAATGGCTAATTTAACTGCCATTTCAGTCATATCCTTGGACACCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGTCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGGGAATTGGTCTCTCTCCAAAGACTTTTCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGTTTAAGCCTCTCCTCCATACCAAAATGTGTTGCGGAATTGCCTTCTATTTCCAGGATTTACATGGCAGGATGTGGAATCCAAGGGGAAGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGCATTCCAACTTGGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCGCTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCCGTAATTCGAGTTTTCCAGATAAAACAGACATCCCCATTTGAATCATCACTGACGAATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGTAA

Protein Analysis

517

Amino Acids

55.71

Weight (kDa)

5.81

Isoelectric Point (pI)

40.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 99 - 212 7e-08 Leucine-rich repeat region
LRR_8 PF13855 131 - 191 1.4e-06 Leucine rich repeat
LRR_8 PF13855 180 - 239 1.7e-07 Leucine rich repeat
LRR_14 PF23598 207 - 306 3.7e-07 Leucine-rich repeat region
LRR_14 PF23598 275 - 398 4.4e-09 Leucine-rich repeat region
LRR_8 PF13855 278 - 337 1.9e-10 Leucine rich repeat
LRR_8 PF13855 326 - 385 2.1e-07 Leucine rich repeat
LRR_8 PF13855 423 - 481 7.7e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 524, 574
AccI GTMKAC 2 cut(s) 129, 583
AciI CCGC 1 cut(s) 1184
AclWI GGATC 3 cut(s) 442, 1375, 1413
AcoI YGGCCR 2 cut(s) 143, 1015
AcsI RAATTY 5 cut(s) 120, 601, 610, 726, 967
AcuI CTGAAG 4 cut(s) 120, 542, 662, 1083
AfaI GTAC 3 cut(s) 27, 64, 483
AfiI CCNNNNNNNGG 3 cut(s) 524, 574, 891
AflII CTTAAG 2 cut(s) 533, 836
AjiI CACGTC 1 cut(s) 127
AjnI CCWGG 2 cut(s) 235, 1202
AjuI GAANNNNNNNTTGG 2 cut(s) 1224, 1256
Alw21I GWGCWC 1 cut(s) 345
Alw26I GTCTC 2 cut(s) 907, 1072
AlwI GGATC 3 cut(s) 442, 1375, 1413
AoxI GGCC 4 cut(s) 97, 139, 143, 1015
ApoI RAATTY 5 cut(s) 120, 601, 610, 726, 967
Asp700I GAANNNNTTC 1 cut(s) 1330
AspS9I GGNCC 3 cut(s) 156, 794, 1088
AsuII TTCGAA 1 cut(s) 1117
AsuNHI GCTAGC 1 cut(s) 1441
AvaII GGWCC 3 cut(s) 156, 794, 1088
BalI TGGCCA 1 cut(s) 1017
BanII GRGCYC 1 cut(s) 345
BarI GAAGNNNNNNTAC 2 cut(s) 465, 497
BbsI GAAGAC 3 cut(s) 822, 842, 1101
Bbv12I GWGCWC 1 cut(s) 345
BccI CCATC 1 cut(s) 817
BciT130I CCWGG 2 cut(s) 237, 1204
BcoDI GTCTC 2 cut(s) 907, 1072
BfaI CTAG 7 cut(s) 66, 117, 320, 633, 923, 957, 1442
BfrI CTTAAG 2 cut(s) 533, 836
BglII AGATCT 1 cut(s) 331
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 237, 1204
Bme18I GGWCC 3 cut(s) 156, 794, 1088
BmgBI CACGTC 1 cut(s) 127
BmgT120I GGNCC 3 cut(s) 156, 794, 1088
BmiI GGNNCC 3 cut(s) 530, 795, 1450
BmrFI CCNGG 2 cut(s) 237, 1204
BmsI GCATC 1 cut(s) 247
BmtI GCTAGC 1 cut(s) 1445
BpiI GAAGAC 3 cut(s) 822, 842, 1101
BpmI CTGGAG 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 1117
BpuEI CTTGAG 3 cut(s) 809, 959, 1519
BsaI GGTCTC 1 cut(s) 907
BsaJI CCNNGG 4 cut(s) 236, 523, 771, 1231
BsaWI WCCGGW 1 cut(s) 1301
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 574, 891
Bse118I RCCGGY 1 cut(s) 141
Bse1I ACTGG 6 cut(s) 52, 168, 352, 457, 652, 874
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 237, 1204
BseDI CCNNGG 4 cut(s) 236, 523, 771, 1231
BseGI GGATG 4 cut(s) 262, 371, 1226, 1481
BseLI CCNNNNNNNGG 3 cut(s) 524, 574, 891
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 2 cut(s) 1009, 1061
BseNI ACTGG 6 cut(s) 52, 168, 352, 457, 652, 874
BseRI GAGGAG 1 cut(s) 1153
BshFI GGCC 4 cut(s) 99, 141, 145, 1017
BsiHKAI GWGCWC 1 cut(s) 345
BsiSI CCGG 2 cut(s) 142, 1302
BslFI GGGAC 1 cut(s) 807
BslI CCNNNNNNNGG 3 cut(s) 524, 574, 891
BsmAI GTCTC 2 cut(s) 907, 1072
BsmBI CGTCTC 1 cut(s) 1072
BsmFI GGGAC 1 cut(s) 807
BsmI GAATGC 1 cut(s) 1308
BsnI GGCC 4 cut(s) 99, 141, 145, 1017
Bso31I GGTCTC 1 cut(s) 907
Bsp119I TTCGAA 1 cut(s) 1117
Bsp1286I GDGCHC 1 cut(s) 345
BspACI CCGC 1 cut(s) 1184
BspANI GGCC 4 cut(s) 99, 141, 145, 1017
BspCNI CTCAG 2 cut(s) 1008, 1060
BspLI GGNNCC 3 cut(s) 530, 795, 1450
BspOI GCTAGC 1 cut(s) 1445
BspPI GGATC 3 cut(s) 442, 1375, 1413
BspT104I TTCGAA 1 cut(s) 1117
BspTI CTTAAG 2 cut(s) 533, 836
BspTNI GGTCTC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 141
BsrI ACTGG 6 cut(s) 52, 168, 352, 457, 652, 874
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 4 cut(s) 236, 523, 771, 1231
BssNAI GTATAC 1 cut(s) 584
BssT1I CCWWGG 3 cut(s) 523, 771, 1231
Bst1107I GTATAC 1 cut(s) 584
Bst2UI CCWGG 2 cut(s) 237, 1204
Bst4CI ACNGT 2 cut(s) 1151, 1529
Bst6I CTCTTC 1 cut(s) 35
BstAFI CTTAAG 2 cut(s) 533, 836
BstAPI GCANNNNNTGC 2 cut(s) 75, 257
BstBI TTCGAA 1 cut(s) 1117
BstC8I GCNNGC 4 cut(s) 76, 143, 1443, 1447
BstDEI CTNAG 2 cut(s) 995, 1047
BstF5I GGATG 4 cut(s) 262, 371, 1226, 1481
BstMAI GTCTC 2 cut(s) 907, 1072
BstMWI GCNNNNNNNGC 2 cut(s) 75, 257
BstNI CCWGG 2 cut(s) 237, 1204
BstSCI CCNGG 2 cut(s) 235, 1202
BstV2I GAAGAC 3 cut(s) 822, 842, 1101
BstX2I RGATCY 2 cut(s) 331, 1380
BstYI RGATCY 2 cut(s) 331, 1380
BstZ17I GTATAC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 99, 141, 145, 1017
BtrI CACGTC 1 cut(s) 127
BtsCI GGATG 4 cut(s) 262, 371, 1226, 1481
BtsI GCAGTG 1 cut(s) 1091
BtsIMutI CAGTG 5 cut(s) 345, 450, 1003, 1091, 1499
Cac8I GCNNGC 4 cut(s) 76, 143, 1443, 1447
Cfr10I RCCGGY 1 cut(s) 141
Cfr13I GGNCC 3 cut(s) 156, 794, 1088
Csp6I GTAC 3 cut(s) 26, 63, 482
CviAII CATG 3 cut(s) 488, 1213, 1430
CviQI GTAC 3 cut(s) 26, 63, 482
DdeI CTNAG 2 cut(s) 995, 1047
EaeI YGGCCR 2 cut(s) 143, 1015
Eam1104I CTCTTC 1 cut(s) 35
EarI CTCTTC 1 cut(s) 35
Ecl136II GAGCTC 1 cut(s) 343
Eco130I CCWWGG 3 cut(s) 523, 771, 1231
Eco147I AGGCCT 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 345
Eco31I GGTCTC 1 cut(s) 907
Eco47I GGWCC 3 cut(s) 156, 794, 1088
Eco53kI GAGCTC 1 cut(s) 343
Eco57I CTGAAG 4 cut(s) 120, 542, 662, 1083
EcoICRI GAGCTC 1 cut(s) 343
EcoRI GAATTC 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 235, 1202
EcoT14I CCWWGG 3 cut(s) 523, 771, 1231
EcoT38I GRGCYC 1 cut(s) 345
ErhI CCWWGG 3 cut(s) 523, 771, 1231
Esp3I CGTCTC 1 cut(s) 1072
FaeI CATG 3 cut(s) 491, 1216, 1433
FaqI GGGAC 1 cut(s) 807
FatI CATG 3 cut(s) 487, 1212, 1429
FblI GTMKAC 2 cut(s) 129, 583
FokI GGATG 4 cut(s) 269, 358, 1233, 1468
FriOI GRGCYC 1 cut(s) 345
FseI GGCCGGCC 1 cut(s) 145
FspBI CTAG 7 cut(s) 66, 117, 320, 633, 923, 957, 1442
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 4 cut(s) 99, 141, 145, 1017
HapII CCGG 2 cut(s) 142, 1302
Hin1II CATG 3 cut(s) 491, 1216, 1433
HincII GTYRAC 2 cut(s) 130, 1040
HindII GTYRAC 2 cut(s) 130, 1040
HindIII AAGCTT 3 cut(s) 404, 814, 935
HpaII CCGG 2 cut(s) 142, 1302
Hpy166II GTNNAC 3 cut(s) 130, 584, 1040
Hpy188I TCNGA 6 cut(s) 401, 1080, 1102, 1288, 1325, 1522
Hpy188III TCNNGA 8 cut(s) 117, 320, 357, 623, 685, 788, 1244, 1468
Hpy8I GTNNAC 3 cut(s) 130, 584, 1040
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 6 cut(s) 47, 306, 744, 1107, 1124, 1203
HpyCH4III ACNGT 2 cut(s) 1151, 1529
HpyCH4IV ACGT 2 cut(s) 126, 1065
HpyCH4V TGCA 3 cut(s) 177, 487, 1433
HpyF10VI GCNNNNNNNGC 2 cut(s) 75, 257
HpyF3I CTNAG 2 cut(s) 995, 1047
HpySE526I ACGT 2 cut(s) 126, 1065
Hsp92II CATG 3 cut(s) 491, 1216, 1433
KroI GCCGGC 1 cut(s) 141
KroNI GCCGGC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 265, 944, 1454
LweI GCATC 1 cut(s) 247
MaeI CTAG 7 cut(s) 66, 117, 320, 633, 923, 957, 1442
MaeII ACGT 2 cut(s) 126, 1065
MaeIII GTNAC 4 cut(s) 197, 217, 507, 650
MboII GAAGA 8 cut(s) 16, 22, 69, 485, 548, 822, 842, 1101
MflI RGATCY 2 cut(s) 331, 1380
MhlI GDGCHC 1 cut(s) 345
MlsI TGGCCA 1 cut(s) 1017
MluNI TGGCCA 1 cut(s) 1017
MlyI GAGTC 3 cut(s) 74, 225, 1382
MmeI TCCRAC 1 cut(s) 1337
Mox20I TGGCCA 1 cut(s) 1017
MroNI GCCGGC 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 1330
MscI TGGCCA 1 cut(s) 1017
MseI TTAA 6 cut(s) 242, 534, 749, 837, 845, 1154
Msp20I TGGCCA 1 cut(s) 1017
MspCI CTTAAG 2 cut(s) 533, 836
MspI CCGG 2 cut(s) 142, 1302
MspR9I CCNGG 2 cut(s) 237, 1204
Mva1269I GAATGC 1 cut(s) 1308
MvaI CCWGG 2 cut(s) 237, 1204
MwoI GCNNNNNNNGC 2 cut(s) 75, 257
NaeI GCCGGC 1 cut(s) 143
NgoMIV GCCGGC 1 cut(s) 141
NheI GCTAGC 1 cut(s) 1441
NlaIII CATG 3 cut(s) 491, 1216, 1433
NlaIV GGNNCC 3 cut(s) 530, 795, 1450
NmeAIII GCCGAG 1 cut(s) 1315
NmuCI GTSAC 4 cut(s) 197, 217, 507, 650
NspV TTCGAA 1 cut(s) 1117
PceI AGGCCT 1 cut(s) 99
PctI GAATGC 1 cut(s) 1308
PdiI GCCGGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 1330
PfeI GAWTC 7 cut(s) 538, 590, 1008, 1081, 1227, 1493, 1542
PflMI CCANNNNNTGG 2 cut(s) 524, 574
PfoI TCCNGGA 1 cut(s) 1202
PleI GAGTC 3 cut(s) 74, 224, 1382
PpsI GAGTC 3 cut(s) 74, 224, 1382
Psp124BI GAGCTC 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 235, 1202
PspGI CCWGG 2 cut(s) 235, 1202
PspN4I GGNNCC 3 cut(s) 530, 795, 1450
PspPI GGNCC 3 cut(s) 156, 794, 1088
PsuI RGATCY 2 cut(s) 331, 1380
RigI GGCCGGCC 1 cut(s) 145
RsaI GTAC 3 cut(s) 27, 64, 483
RsaNI GTAC 3 cut(s) 26, 63, 482
SacI GAGCTC 1 cut(s) 345
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 6 cut(s) 242, 534, 749, 837, 845, 1154
Sau96I GGNCC 3 cut(s) 156, 794, 1088
ScaI AGTACT 1 cut(s) 64
SchI GAGTC 3 cut(s) 74, 225, 1382
ScrFI CCNGG 2 cut(s) 237, 1204
SduI GDGCHC 1 cut(s) 345
SfaNI GCATC 1 cut(s) 247
SfuI TTCGAA 1 cut(s) 1117
SinI GGWCC 3 cut(s) 156, 794, 1088
SmlI CTYRAG 5 cut(s) 533, 788, 836, 938, 1534
SmoI CTYRAG 5 cut(s) 533, 788, 836, 938, 1534
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 1 cut(s) 1184
SspI AATATT 1 cut(s) 1123
SspMI CTAG 7 cut(s) 66, 117, 320, 633, 923, 957, 1442
SstI GAGCTC 1 cut(s) 345
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 2 cut(s) 235, 1202
StyI CCWWGG 3 cut(s) 523, 771, 1231
TaaI ACNGT 2 cut(s) 1151, 1529
TaiI ACGT 2 cut(s) 129, 1068
TaqI TCGA 6 cut(s) 129, 1117, 1278, 1391, 1459, 1545
TatI WGTACW 3 cut(s) 25, 62, 481
TfiI GAWTC 7 cut(s) 538, 590, 1008, 1081, 1227, 1493, 1542
Tru1I TTAA 6 cut(s) 242, 534, 749, 837, 845, 1154
Tru9I TTAA 6 cut(s) 242, 534, 749, 837, 845, 1154
TscAI CASTG 5 cut(s) 352, 457, 1003, 1098, 1506
TseFI GTSAC 4 cut(s) 197, 217, 507, 650
Tsp45I GTSAC 4 cut(s) 197, 217, 507, 650
TspDTI ATGAA 6 cut(s) 17, 177, 293, 374, 582, 608
TspGWI ACGGA 1 cut(s) 1441
TspRI CASTG 5 cut(s) 352, 457, 1003, 1098, 1506
Van91I CCANNNNNTGG 2 cut(s) 524, 574
Vha464I CTTAAG 2 cut(s) 533, 836
VpaK11BI GGWCC 3 cut(s) 156, 794, 1088
XapI RAATTY 5 cut(s) 120, 601, 610, 726, 967
XbaI TCTAGA 2 cut(s) 116, 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 1210
XmiI GTMKAC 2 cut(s) 129, 583
XmnI GAANNNNTTC 1 cut(s) 1330
XspI CTAG 7 cut(s) 66, 117, 320, 633, 923, 957, 1442
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.