Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

65686126 .. 65687763

Gene Structure 1638 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ41274

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1482 bp

ATGAAAGGTTTGCTATCTCCTTCAATAACACTCCTATCCTCTCTAGAGGTCATAGATCTTGGAGAGCTCGCTGGTCTTTCTGGAACAATCCCAACATCCATAGGGTTTCATCTCCCAAATCTCCGAAAGCTTGTTCTCTATGGCAATAGGCTTTGTGGATCAATACCAGAAAGCATTGGTAAGCTGTCAAACCTTGAAGAACTCGTACTGCATGAGAATAGGTTTTCTAGCAATTCTCTAACTGGTCACATACCACAGAGAATTGGTCAGCTTCAGGTCTTGAAAGAGCTTGATCTTTCAAGCAATCTTTTGGTTGTGGAAATTCCACCTTCAATGGCTAATTTAACTGCCATTTCAGTTATATCCTTGGACACCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGGCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGAGAATTGGTCTCTCTCCAAAGACTTTCCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGTTTAAGCCTCTCCTCCATACCAAAATGTGATGTGGAATCCAAGGGGGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGTATTCCAACTTGGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCACTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCCATAAGTCAAGTTTTCCAGATAAAACAGACATTTCCATTTGAATCATTACTGACGTATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGCAAATTGGTGTAAGACCACAACATGGCATTAAGTTTCTCAATTTATCAAGCAACATGTTGCAAGGGAAATTACCAACATCCATACAGAGATTGGAGTCGCTTGAAAGTATGGATTTGAGTACCAACAAGTTAGGTTTCAACTTGCCGGAGGGCTTGGGAAATTTGAGCAAGTTAAAGACGCTCAACTTGCAGAAAAACCGCTTTAACGGCAGCATTCCAAATGGATTTTTGAAGTTGAGAAAACTGAAGAAATTAGATTTATCAGACAATCTTCTGGTGGGAAAAATCCCAGGAGGCAAACTGAGCGACTTTCCGAAGAGTTCTTACTCCAAAAACAAAGGCTTGTGTGGAAAGCCTCTGAAGCCCTGTAAGCACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

493

Amino Acids

53.63

Weight (kDa)

9.15

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	82 - 171	4.6e-06	Leucine-rich repeat region
LRR_14	PF23598	142 - 246	6.7e-09	Leucine-rich repeat region
LRR_8	PF13855	143 - 202	9.1e-11	Leucine rich repeat
LRR_8	PF13855	191 - 250	1.7e-07	Leucine rich repeat
LRR_8	PF13855	274 - 332	7.2e-09	Leucine rich repeat
LRR_14	PF23598	370 - 454	8.5e-08	Leucine-rich repeat region
LRR_8	PF13855	420 - 459	1e-05	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1124
AciI	CCGC	1 cut(s)	1300
AclWI	GGATC	3 cut(s)	166, 928, 966
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	3 cut(s)	321, 562, 1261
AcuI	CTGAAG	4 cut(s)	257, 678, 1367, 1481
AfaI	GTAC	2 cut(s)	207, 1222
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AflII	CTTAAG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	1155
AjnI	CCWGG	1 cut(s)	1390
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	502, 667
AlwI	GGATC	3 cut(s)	166, 928, 966
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	1 cut(s)	1311
ApoI	RAATTY	3 cut(s)	321, 562, 1261
Asp700I	GAANNNNTTC	1 cut(s)	883
AspS9I	GGNCC	2 cut(s)	389, 683
AsuII	TTCGAA	1 cut(s)	712
AsuNHI	GCTAGC	1 cut(s)	994
AvaII	GGWCC	2 cut(s)	389, 683
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	69
BarI	GAAGNNNNNNTAC	4 cut(s)	189, 221, 1409, 1441
BbsI	GAAGAC	2 cut(s)	417, 696
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	1323
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	1324
BciT130I	CCWGG	1 cut(s)	1392
BcoDI	GTCTC	2 cut(s)	502, 667
BfaI	CTAG	5 cut(s)	44, 228, 518, 552, 995
BfrI	CTTAAG	1 cut(s)	431
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	1312
BlsI	GCNGC	1 cut(s)	1313
Bme1390I	CCNGG	1 cut(s)	1392
Bme18I	GGWCC	2 cut(s)	389, 683
BmgT120I	GGNCC	2 cut(s)	389, 683
BmiI	GGNNCC	3 cut(s)	390, 795, 1003
BmrFI	CCNGG	1 cut(s)	1392
BmtI	GCTAGC	1 cut(s)	998
BpiI	GAAGAC	2 cut(s)	417, 696
Bpu14I	TTCGAA	1 cut(s)	712
BpuEI	CTTGAG	3 cut(s)	404, 554, 1072
BsaI	GGTCTC	1 cut(s)	502
BsaJI	CCNNGG	3 cut(s)	366, 786, 1390
BsaWI	WCCGGW	1 cut(s)	854
BsaXI	ACNNNNNCTCC	2 cut(s)	480, 510
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse1I	ACTGG	2 cut(s)	247, 469
BseBI	CCWGG	1 cut(s)	1392
BseDI	CCNNGG	3 cut(s)	366, 786, 1390
BseGI	GGATG	2 cut(s)	95, 1178
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMII	CTCAG	3 cut(s)	604, 656, 1394
BseNI	ACTGG	2 cut(s)	247, 469
BseRI	GAGGAG	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	1323
BshFI	GGCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	855, 1247
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	2 cut(s)	502, 667
BsmBI	CGTCTC	1 cut(s)	667
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	1 cut(s)	1314
BsnI	GGCC	1 cut(s)	612
Bso31I	GGTCTC	1 cut(s)	502
Bsp119I	TTCGAA	1 cut(s)	712
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
BspACI	CCGC	1 cut(s)	1300
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	3 cut(s)	603, 655, 1395
BspLI	GGNNCC	3 cut(s)	390, 795, 1003
BspOI	GCTAGC	1 cut(s)	998
BspPI	GGATC	3 cut(s)	166, 928, 966
BspT104I	TTCGAA	1 cut(s)	712
BspTI	CTTAAG	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	502
BsrI	ACTGG	2 cut(s)	247, 469
BssECI	CCNNGG	3 cut(s)	366, 786, 1390
BssMI	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
BssT1I	CCWWGG	2 cut(s)	366, 786
Bst2UI	CCWGG	1 cut(s)	1392
Bst4CI	ACNGT	2 cut(s)	746, 1082
Bst6I	CTCTTC	1 cut(s)	1412
BstAFI	CTTAAG	1 cut(s)	431
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	3 cut(s)	69, 996, 1000
BstDEI	CTNAG	3 cut(s)	590, 642, 1403
BstF5I	GGATG	2 cut(s)	95, 1178
BstKTI	GATC	8 cut(s)	58, 161, 295, 733, 936, 961, 979, 1069
BstMAI	GTCTC	2 cut(s)	502, 667
BstMBI	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
BstMWI	GCNNNNNNNGC	5 cut(s)	1288, 1308, 1404, 1462, 1471
BstNI	CCWGG	1 cut(s)	1392
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	1 cut(s)	1390
BstV1I	GCAGC	1 cut(s)	1323
BstV2I	GAAGAC	2 cut(s)	417, 696
BstX2I	RGATCY	2 cut(s)	55, 933
BstYI	RGATCY	2 cut(s)	55, 933
BsuRI	GGCC	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	95, 1178
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	2 cut(s)	598, 686
Cac8I	GCNNGC	3 cut(s)	69, 996, 1000
Cfr13I	GGNCC	2 cut(s)	389, 683
CseI	GACGC	1 cut(s)	1288
Csp6I	GTAC	2 cut(s)	206, 1221
CviAII	CATG	5 cut(s)	212, 983, 1124, 1156, 1479
CviQI	GTAC	2 cut(s)	206, 1221
DdeI	CTNAG	3 cut(s)	590, 642, 1403
DpnI	GATC	8 cut(s)	57, 160, 294, 732, 935, 960, 978, 1068
DpnII	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	1412
EarI	CTCTTC	1 cut(s)	1412
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	366, 786
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	389, 683
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	4 cut(s)	257, 678, 1367, 1481
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	1390
EcoT14I	CCWWGG	2 cut(s)	366, 786
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	366, 786
Esp3I	CGTCTC	1 cut(s)	667
FaeI	CATG	5 cut(s)	215, 986, 1127, 1159, 1482
FaqI	GGGAC	1 cut(s)	402
FatI	CATG	5 cut(s)	211, 982, 1123, 1155, 1478
Fnu4HI	GCNGC	1 cut(s)	1312
FokI	GGATG	2 cut(s)	82, 1165
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	1312
FspBI	CTAG	5 cut(s)	44, 228, 518, 552, 995
GluI	GCNGC	1 cut(s)	1312
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	2 cut(s)	855, 1247
HgaI	GACGC	1 cut(s)	1288
Hin1II	CATG	5 cut(s)	215, 986, 1127, 1159, 1482
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HindIII	AAGCTT	3 cut(s)	128, 409, 530
HinfI	GANTC	7 cut(s)	603, 676, 782, 941, 1046, 1095, 1196
HpaII	CCGG	2 cut(s)	855, 1247
Hpy166II	GTNNAC	1 cut(s)	635
Hpy188I	TCNGA	9 cut(s)	125, 675, 697, 841, 878, 1075, 1366, 1416, 1461
Hpy188III	TCNNGA	6 cut(s)	44, 81, 280, 383, 797, 1021
Hpy8I	GTNNAC	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	30, 339, 702, 719
HpyCH4III	ACNGT	2 cut(s)	746, 1082
HpyCH4IV	ACGT	2 cut(s)	660, 1058
HpyCH4V	TGCA	4 cut(s)	211, 986, 1162, 1291
HpyF10VI	GCNNNNNNNGC	5 cut(s)	1288, 1308, 1404, 1462, 1471
HpyF3I	CTNAG	3 cut(s)	590, 642, 1403
HpySE526I	ACGT	2 cut(s)	660, 1058
Hsp92II	CATG	5 cut(s)	215, 986, 1127, 1159, 1482
Kzo9I	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
LmnI	GCTCC	2 cut(s)	539, 1007
Lsp1109I	GCAGC	1 cut(s)	1323
MaeI	CTAG	5 cut(s)	44, 228, 518, 552, 995
MaeII	ACGT	2 cut(s)	660, 1058
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	8 cut(s)	57, 160, 294, 732, 935, 960, 978, 1068
MboI	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
MboII	GAAGA	6 cut(s)	209, 417, 696, 1360, 1364, 1429
MflI	RGATCY	2 cut(s)	55, 933
MhlI	GDGCHC	1 cut(s)	69
MlsI	TGGCCA	1 cut(s)	612
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	935, 1205
MmeI	TCCRAC	1 cut(s)	890
Mox20I	TGGCCA	1 cut(s)	612
MroXI	GAANNNNTTC	1 cut(s)	883
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	7 cut(s)	344, 432, 440, 749, 1131, 1274, 1305
Msp20I	TGGCCA	1 cut(s)	612
MspCI	CTTAAG	1 cut(s)	431
MspI	CCGG	2 cut(s)	855, 1247
MspR9I	CCNGG	1 cut(s)	1392
Mva1269I	GAATGC	1 cut(s)	1314
MvaI	CCWGG	1 cut(s)	1392
MwoI	GCNNNNNNNGC	5 cut(s)	1288, 1308, 1404, 1462, 1471
NdeII	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
NheI	GCTAGC	1 cut(s)	994
NlaIII	CATG	5 cut(s)	215, 986, 1127, 1159, 1482
NlaIV	GGNNCC	3 cut(s)	390, 795, 1003
NmeAIII	GCCGAG	1 cut(s)	868
NmuCI	GTSAC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	1159
NspV	TTCGAA	1 cut(s)	712
PciI	ACATGT	1 cut(s)	1155
PctI	GAATGC	1 cut(s)	1314
PdmI	GAANNNNTTC	1 cut(s)	883
PfeI	GAWTC	5 cut(s)	603, 676, 782, 1046, 1095
PflMI	CCANNNNNTGG	1 cut(s)	1124
PkrI	GCNGC	1 cut(s)	1313
PleI	GAGTC	2 cut(s)	935, 1204
PpsI	GAGTC	2 cut(s)	935, 1204
PscI	ACATGT	1 cut(s)	1155
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	1390
PspGI	CCWGG	1 cut(s)	1390
PspN4I	GGNNCC	3 cut(s)	390, 795, 1003
PspPI	GGNCC	2 cut(s)	389, 683
PsuI	RGATCY	2 cut(s)	55, 933
RsaI	GTAC	2 cut(s)	207, 1222
RsaNI	GTAC	2 cut(s)	206, 1221
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	7 cut(s)	344, 432, 440, 749, 1131, 1274, 1305
SatI	GCNGC	1 cut(s)	1312
Sau3AI	GATC	8 cut(s)	55, 158, 292, 730, 933, 958, 976, 1066
Sau96I	GGNCC	2 cut(s)	389, 683
SchI	GAGTC	2 cut(s)	935, 1205
ScrFI	CCNGG	1 cut(s)	1392
SduI	GDGCHC	1 cut(s)	69
SfuI	TTCGAA	1 cut(s)	712
SinI	GGWCC	2 cut(s)	389, 683
SmlI	CTYRAG	4 cut(s)	383, 431, 533, 1087
SmoI	CTYRAG	4 cut(s)	383, 431, 533, 1087
SsiI	CCGC	1 cut(s)	1300
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	5 cut(s)	44, 228, 518, 552, 995
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	1390
StyI	CCWWGG	2 cut(s)	366, 786
TaaI	ACNGT	2 cut(s)	746, 1082
TaiI	ACGT	2 cut(s)	663, 1061
TaqI	TCGA	4 cut(s)	712, 831, 944, 1098
TfiI	GAWTC	5 cut(s)	603, 676, 782, 1046, 1095
Tru1I	TTAA	7 cut(s)	344, 432, 440, 749, 1131, 1274, 1305
Tru9I	TTAA	7 cut(s)	344, 432, 440, 749, 1131, 1274, 1305
TscAI	CASTG	2 cut(s)	598, 693
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	1311
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	17, 98
TspRI	CASTG	2 cut(s)	598, 693
Van91I	CCANNNNNTGG	1 cut(s)	1124
Vha464I	CTTAAG	1 cut(s)	431
VpaK11BI	GGWCC	2 cut(s)	389, 683
XapI	RAATTY	3 cut(s)	321, 562, 1261
XbaI	TCTAGA	1 cut(s)	43
XceI	RCATGY	1 cut(s)	1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1189
XmnI	GAANNNNTTC	1 cut(s)	883
XspI	CTAG	5 cut(s)	44, 228, 518, 552, 995

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.