Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0010561

Physical Location & Seq

Genomic Coordinates Reverse (-)

62839778 .. 62841298

Gene Structure 1521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G036020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGAAACCAGTTGTTGCAAGTGGAAAGGCATTTCTTGTGACAATAGAACTGGCAGTCACAGAGATCAATCTACCAGGGTTAATTACAACAGAGGATGCTCCTATCCAAGCCGAAATGAAAGGTTTGCTATCTCCTTCAATAACACTCCTATCCTCTCTAGAGGTCATAGATCTCGGAGAGCTCGCTGGTCTTTCTGGAACAATCCCAACATCCATAGGGTTTCATCTCCCAAATCTCCGAAAGCTTGTTCTCTATGGCAATAGGCTTTGTGGATCAATTACAGAAAGCGTTGGTAAGCTGTCAAACCTTGAAGAACTCGTACTGCATGAGAATAGGTTTTCTGGGTCACTCCCACCAAGCCTTGGGAACCTTAAGAATTTAAATAGGCTACTTCTTCAGTCAAACCAATTTGTGGGTAGTATACCTGATTCATTTTCAAATTTGACAAATTTGGTTCATCTTGATCTTTCTAGCAATTCTCTAACTGGTCACATACCACAGAGAATTGGTCAGCTTCAGGTCTTGAAAGAGCTTGATCTTTCAAGCAATCTTTTGGTTGTGGAAATTCCACCTTCAATGGCTAATTTAACTGCCATTTCAGTTATATCCGTGGACGCCAATCATCTTGAGGGACCAATCCCATTTCCATCAAGCTTTGCCCAGATGTCTTCTCTTAAGATTTTAAGGCTTCAATCCAATCATCTTACTGGAAAAATACCCTCCACCTTTGGAGAATTGGTCTCTCTCCAAAGACTTTCCCTAGCAGATAACAAGCTTGAGGGAGCAATTCCCTCTAGTTTGGGGAATTTATCGGCTTTGAGTGAGCTATACCTCAGTGGCAACCGATTCTCTGGCCAAATACCAAAATCAATAGGTCAACTCTCTCAGCTTATATTGTTGAACGTCTCTCATAATCTGATTCAAGGACCACTGCCTTCAGAGATGTCTTCCCTTCGAAATATTGAAACACTTGATCTGTCGTTCAACCGTTTAAGCCTCTCCTCCATACCAAAATGTGTTGCGGAATTGCCTTCTATTTCCAGGATTTACATGGCAGGATGTGGAATCCAAGGGGAAGTTCCAGAGTTCTTACACAAAACTCCAATACAAGAACTCGACTTATCTGACAACAATCTTACCGGAAGTATTCCAACTTGGCTCGGAAACCTTTCTCGGCTCTACATATTGAACCTGTCCAAAAACTCACTTGTTTCAAAGATCCCTGACTCGATTACTAACTTGGATCAGTTGGTTGTGATTGATCTCCATGCAAACAAGCTAGCAGGCTCTATAAGTCAAGTTTTCCAGATAAAACAGACATTTCCATTTGAATCATCACTGACGTATGTTGATCTATCTGATAACAGTTTCTCAAGTGGAATCGAGCAAATTGGTGTAAGACCACAACATGGCATTAAGTTTCTCAATTTATCAAGCAACATGTTGCAAGGGAAATTACCAACATCCATACAGAGATTGGAGTCGCTTGAAAGTATGGATTTGAGAGTACCAACAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0006898 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009595 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010359 GO:0012505 GO:0016020 GO:0016043 GO:0016045 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0022898 GO:0023052 GO:0031410 GO:0031982 GO:0032409 GO:0032412 GO:0032879 GO:0033036 GO:0033037 GO:0033554 GO:0034762 GO:0034765 GO:0036211 GO:0038023 GO:0042545 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043269 GO:0043412 GO:0044070 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051606 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0060089 GO:0065007 GO:0065009 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098542 GO:0098543 GO:0098581 GO:0098657 GO:0140096 GO:1901564 GO:1903959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

506

Amino Acids

54.64

Weight (kDa)

5.73

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	45 - 158	7.4e-08	Leucine-rich repeat region
LRR_8	PF13855	126 - 185	2.4e-07	Leucine rich repeat
LRR_14	PF23598	147 - 231	2.1e-06	Leucine-rich repeat region
LRR_14	PF23598	221 - 344	9.7e-10	Leucine-rich repeat region
LRR_8	PF13855	224 - 283	9.4e-11	Leucine rich repeat
LRR_8	PF13855	272 - 331	1.7e-07	Leucine rich repeat
LRR_8	PF13855	369 - 427	7.5e-09	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010561)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35490
malus_domestica	MD04G1242300.v1.1 MD04G1242700.v1.1 MD10G1334400.v1.1 MD13G1082800.v1.1
prunus_persica	Prupe.1G264100_v2.0.a1
pyrus_communis	pycom16g07060
rosa_chinensis	RchiOBHm_Chr4g0445141
rosa_laevigata	RLG00000005764
rosa_multiflora	Rmu_sc0009010.1_g000003 Rmu_sc0009010.1_g000004 Rmu_sc0023183.1_g000001
rosa_roxburghii	Rroxscaffold_5G00385660
rosa_rugosa	Rorug04G0359300
rosa_samantha	Rh2AG286500 Rh4AG420100 Rh4BG431800 Rh4BG431900 Rh4CG446400 Rh4DG428000
rosa_wichuraiana	Rw4G036020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	362, 412, 1409
AccI	GTMKAC	1 cut(s)	421
AciI	CCGC	1 cut(s)	1022
AclWI	GGATC	3 cut(s)	280, 1213, 1251
AcoI	YGGCCR	1 cut(s)	853
AcsI	RAATTY	5 cut(s)	376, 439, 448, 564, 805
AcuI	CTGAAG	3 cut(s)	380, 500, 921
AcyI	GRCGYC	1 cut(s)	615
AfaI	GTAC	2 cut(s)	321, 1509
AfiI	CCNNNNNNNGG	3 cut(s)	362, 412, 1409
AflII	CTTAAG	2 cut(s)	371, 674
AflIII	ACRYGT	1 cut(s)	1440
AjnI	CCWGG	2 cut(s)	73, 1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	1062, 1094
Alw21I	GWGCWC	1 cut(s)	183
Alw26I	GTCTC	2 cut(s)	745, 910
AlwI	GGATC	3 cut(s)	280, 1213, 1251
AoxI	GGCC	1 cut(s)	853
ApoI	RAATTY	5 cut(s)	376, 439, 448, 564, 805
Asp700I	GAANNNNTTC	1 cut(s)	1168
AspS9I	GGNCC	2 cut(s)	632, 926
AsuII	TTCGAA	1 cut(s)	955
AsuNHI	GCTAGC	1 cut(s)	1279
AvaII	GGWCC	2 cut(s)	632, 926
BalI	TGGCCA	1 cut(s)	855
BanII	GRGCYC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbsI	GAAGAC	2 cut(s)	660, 939
Bbv12I	GWGCWC	1 cut(s)	183
BccI	CCATC	1 cut(s)	655
BciT130I	CCWGG	2 cut(s)	75, 1042
BcoDI	GTCTC	2 cut(s)	745, 910
BfaI	CTAG	5 cut(s)	158, 471, 761, 795, 1280
BfrI	CTTAAG	2 cut(s)	371, 674
BglII	AGATCT	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	75, 1042
Bme18I	GGWCC	2 cut(s)	632, 926
BmgT120I	GGNCC	2 cut(s)	632, 926
BmiI	GGNNCC	2 cut(s)	368, 633
BmrFI	CCNGG	2 cut(s)	75, 1042
BmsI	GCATC	1 cut(s)	85
BmtI	GCTAGC	1 cut(s)	1283
BpiI	GAAGAC	2 cut(s)	660, 939
Bpu14I	TTCGAA	1 cut(s)	955
BpuEI	CTTGAG	3 cut(s)	647, 797, 1357
BsaHI	GRCGYC	1 cut(s)	615
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	4 cut(s)	74, 361, 609, 1069
BsaWI	WCCGGW	1 cut(s)	1139
BsaXI	ACNNNNNCTCC	2 cut(s)	723, 753
Bsc4I	CCNNNNNNNGG	3 cut(s)	362, 412, 1409
Bse1I	ACTGG	4 cut(s)	8, 54, 490, 712
BseBI	CCWGG	2 cut(s)	75, 1042
BseDI	CCNNGG	4 cut(s)	74, 361, 609, 1069
BseGI	GGATG	4 cut(s)	100, 209, 1064, 1463
BseLI	CCNNNNNNNGG	3 cut(s)	362, 412, 1409
BseMII	CTCAG	2 cut(s)	847, 899
BseNI	ACTGG	4 cut(s)	8, 54, 490, 712
BseRI	GAGGAG	1 cut(s)	991
BshFI	GGCC	1 cut(s)	855
BsiHKAI	GWGCWC	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	1140
BslFI	GGGAC	1 cut(s)	645
BslI	CCNNNNNNNGG	3 cut(s)	362, 412, 1409
BsmAI	GTCTC	2 cut(s)	745, 910
BsmBI	CGTCTC	1 cut(s)	910
BsmFI	GGGAC	1 cut(s)	645
BsnI	GGCC	1 cut(s)	855
Bso31I	GGTCTC	1 cut(s)	745
Bsp119I	TTCGAA	1 cut(s)	955
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	1 cut(s)	1022
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	2 cut(s)	846, 898
BspLI	GGNNCC	2 cut(s)	368, 633
BspOI	GCTAGC	1 cut(s)	1283
BspPI	GGATC	3 cut(s)	280, 1213, 1251
BspT104I	TTCGAA	1 cut(s)	955
BspTI	CTTAAG	2 cut(s)	371, 674
BspTNI	GGTCTC	1 cut(s)	745
BsrI	ACTGG	4 cut(s)	8, 54, 490, 712
BssECI	CCNNGG	4 cut(s)	74, 361, 609, 1069
BssNAI	GTATAC	1 cut(s)	422
BssNI	GRCGYC	1 cut(s)	615
BssT1I	CCWWGG	2 cut(s)	361, 1069
Bst1107I	GTATAC	1 cut(s)	422
Bst2UI	CCWGG	2 cut(s)	75, 1042
Bst4CI	ACNGT	2 cut(s)	989, 1367
BstACI	GRCGYC	1 cut(s)	615
BstAFI	CTTAAG	2 cut(s)	371, 674
BstBI	TTCGAA	1 cut(s)	955
BstC8I	GCNNGC	3 cut(s)	183, 1281, 1285
BstDEI	CTNAG	2 cut(s)	833, 885
BstDSI	CCRYGG	1 cut(s)	609
BstF5I	GGATG	4 cut(s)	100, 209, 1064, 1463
BstMAI	GTCTC	2 cut(s)	745, 910
BstNI	CCWGG	2 cut(s)	75, 1042
BstNSI	RCATGY	1 cut(s)	1444
BstSCI	CCNGG	2 cut(s)	73, 1040
BstV2I	GAAGAC	2 cut(s)	660, 939
BstX2I	RGATCY	2 cut(s)	169, 1218
BstYI	RGATCY	2 cut(s)	169, 1218
BstZ17I	GTATAC	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	855
BtgI	CCRYGG	1 cut(s)	609
BtsCI	GGATG	4 cut(s)	100, 209, 1064, 1463
BtsI	GCAGTG	1 cut(s)	929
BtsIMutI	CAGTG	3 cut(s)	841, 929, 1337
Cac8I	GCNNGC	3 cut(s)	183, 1281, 1285
Cfr13I	GGNCC	2 cut(s)	632, 926
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	2 cut(s)	320, 1508
CviAII	CATG	5 cut(s)	326, 1051, 1268, 1409, 1441
CviQI	GTAC	2 cut(s)	320, 1508
DdeI	CTNAG	2 cut(s)	833, 885
DraI	TTTAAA	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	853
Ecl136II	GAGCTC	1 cut(s)	181
Eco130I	CCWWGG	2 cut(s)	361, 1069
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	745
Eco47I	GGWCC	2 cut(s)	632, 926
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	3 cut(s)	380, 500, 921
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	73, 1040
EcoT14I	CCWWGG	2 cut(s)	361, 1069
EcoT38I	GRGCYC	1 cut(s)	183
ErhI	CCWWGG	2 cut(s)	361, 1069
Esp3I	CGTCTC	1 cut(s)	910
FaeI	CATG	5 cut(s)	329, 1054, 1271, 1412, 1444
FaqI	GGGAC	1 cut(s)	645
FatI	CATG	5 cut(s)	325, 1050, 1267, 1408, 1440
FblI	GTMKAC	1 cut(s)	421
FokI	GGATG	4 cut(s)	107, 196, 1071, 1450
FriOI	GRGCYC	1 cut(s)	183
FspBI	CTAG	5 cut(s)	158, 471, 761, 795, 1280
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	1 cut(s)	1140
HgaI	GACGC	1 cut(s)	623
Hin1I	GRCGYC	1 cut(s)	615
Hin1II	CATG	5 cut(s)	329, 1054, 1271, 1412, 1444
HincII	GTYRAC	1 cut(s)	878
HindII	GTYRAC	1 cut(s)	878
HindIII	AAGCTT	3 cut(s)	242, 652, 773
HinfI	GANTC	8 cut(s)	428, 846, 919, 1065, 1226, 1331, 1380, 1481
HpaII	CCGG	1 cut(s)	1140
Hpy166II	GTNNAC	3 cut(s)	422, 613, 878
Hpy188I	TCNGA	7 cut(s)	176, 239, 918, 940, 1126, 1163, 1360
Hpy188III	TCNNGA	7 cut(s)	158, 195, 461, 523, 626, 1082, 1306
Hpy8I	GTNNAC	3 cut(s)	422, 613, 878
HpyAV	CCTTC	5 cut(s)	144, 582, 945, 962, 1041
HpyCH4III	ACNGT	2 cut(s)	989, 1367
HpyCH4IV	ACGT	2 cut(s)	903, 1343
HpyCH4V	TGCA	4 cut(s)	17, 325, 1271, 1447
HpyF3I	CTNAG	2 cut(s)	833, 885
HpySE526I	ACGT	2 cut(s)	903, 1343
Hsp92I	GRCGYC	1 cut(s)	615
Hsp92II	CATG	5 cut(s)	329, 1054, 1271, 1412, 1444
LmnI	GCTCC	2 cut(s)	103, 782
LweI	GCATC	1 cut(s)	85
MaeI	CTAG	5 cut(s)	158, 471, 761, 795, 1280
MaeII	ACGT	2 cut(s)	903, 1343
MaeIII	GTNAC	4 cut(s)	37, 55, 345, 488
MboII	GAAGA	4 cut(s)	323, 386, 660, 939
MflI	RGATCY	2 cut(s)	169, 1218
MhlI	GDGCHC	1 cut(s)	183
MlsI	TGGCCA	1 cut(s)	855
MluNI	TGGCCA	1 cut(s)	855
MlyI	GAGTC	2 cut(s)	1220, 1490
MmeI	TCCRAC	1 cut(s)	1175
Mox20I	TGGCCA	1 cut(s)	855
MroXI	GAANNNNTTC	1 cut(s)	1168
MscI	TGGCCA	1 cut(s)	855
MseI	TTAA	8 cut(s)	80, 372, 380, 587, 675, 683, 992, 1416
Msp20I	TGGCCA	1 cut(s)	855
MspCI	CTTAAG	2 cut(s)	371, 674
MspI	CCGG	1 cut(s)	1140
MspR9I	CCNGG	2 cut(s)	75, 1042
MvaI	CCWGG	2 cut(s)	75, 1042
NheI	GCTAGC	1 cut(s)	1279
NlaIII	CATG	5 cut(s)	329, 1054, 1271, 1412, 1444
NlaIV	GGNNCC	2 cut(s)	368, 633
NmeAIII	GCCGAG	1 cut(s)	1153
NmuCI	GTSAC	4 cut(s)	37, 55, 345, 488
NspI	RCATGY	1 cut(s)	1444
NspV	TTCGAA	1 cut(s)	955
PciI	ACATGT	1 cut(s)	1440
PdmI	GAANNNNTTC	1 cut(s)	1168
PfeI	GAWTC	6 cut(s)	428, 846, 919, 1065, 1331, 1380
PflMI	CCANNNNNTGG	3 cut(s)	362, 412, 1409
PfoI	TCCNGGA	1 cut(s)	1040
PleI	GAGTC	2 cut(s)	1220, 1489
PpsI	GAGTC	2 cut(s)	1220, 1489
PscI	ACATGT	1 cut(s)	1440
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	73, 1040
PspGI	CCWGG	2 cut(s)	73, 1040
PspN4I	GGNNCC	2 cut(s)	368, 633
PspPI	GGNCC	2 cut(s)	632, 926
PsuI	RGATCY	2 cut(s)	169, 1218
RsaI	GTAC	2 cut(s)	321, 1509
RsaNI	GTAC	2 cut(s)	320, 1508
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	8 cut(s)	80, 372, 380, 587, 675, 683, 992, 1416
Sau96I	GGNCC	2 cut(s)	632, 926
SchI	GAGTC	2 cut(s)	1220, 1490
ScrFI	CCNGG	2 cut(s)	75, 1042
SduI	GDGCHC	1 cut(s)	183
SfaNI	GCATC	1 cut(s)	85
SfuI	TTCGAA	1 cut(s)	955
SinI	GGWCC	2 cut(s)	632, 926
SmiI	ATTTAAAT	1 cut(s)	381
SmlI	CTYRAG	5 cut(s)	371, 626, 674, 776, 1372
SmoI	CTYRAG	5 cut(s)	371, 626, 674, 776, 1372
SsiI	CCGC	1 cut(s)	1022
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	5 cut(s)	158, 471, 761, 795, 1280
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	2 cut(s)	73, 1040
StyI	CCWWGG	2 cut(s)	361, 1069
SwaI	ATTTAAAT	1 cut(s)	381
TaaI	ACNGT	2 cut(s)	989, 1367
TaiI	ACGT	2 cut(s)	906, 1346
TaqI	TCGA	4 cut(s)	955, 1116, 1229, 1383
TfiI	GAWTC	6 cut(s)	428, 846, 919, 1065, 1331, 1380
Tru1I	TTAA	8 cut(s)	80, 372, 380, 587, 675, 683, 992, 1416
Tru9I	TTAA	8 cut(s)	80, 372, 380, 587, 675, 683, 992, 1416
TscAI	CASTG	3 cut(s)	841, 936, 1344
TseFI	GTSAC	4 cut(s)	37, 55, 345, 488
Tsp45I	GTSAC	4 cut(s)	37, 55, 345, 488
TspDTI	ATGAA	5 cut(s)	17, 131, 212, 420, 446
TspGWI	ACGGA	1 cut(s)	598
TspRI	CASTG	3 cut(s)	841, 936, 1344
Van91I	CCANNNNNTGG	3 cut(s)	362, 412, 1409
Vha464I	CTTAAG	2 cut(s)	371, 674
VpaK11BI	GGWCC	2 cut(s)	632, 926
XapI	RAATTY	5 cut(s)	376, 439, 448, 564, 805
XbaI	TCTAGA	1 cut(s)	157
XceI	RCATGY	1 cut(s)	1444
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1048, 1474
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	1168
XspI	CTAG	5 cut(s)	158, 471, 761, 795, 1280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.