Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

2803581 .. 2805776

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1015500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGTAGGTGTTGGTTTAGTGGGGTTTTGATTGTGTTGGGGTGTGTGTGGTTGGTGCTGCTGGGTGCAGTGGAGGGATACCCAGCAGAGGATCTGGTAGTGAGTCTGCCTGGTCAGCCAAGTGTTGGGTTCAAACAGTATGCTGGGTATGTTGACGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCAGATAAGCAGCCTGACAAGAAGTCCCTCACTCTTTGGCTCAATGGAGGTCCGGGGTGTTCTTCCATTGGCGGAGGTGCCTTTACGGAGTTGGGTCCATTTTATCCAACAGGTGACGGTAGAGGCGTCCGGAGAAATAAAATGTCATGGAACAGAGCATCAAATCTCCTTTTTGTTGAGTCTCCTGCTGGAGTAGGATGGTCATACTCGAATACTAGTTCAGATTATAACTCTGGGGATGCCTCAACTGCAAGAGATATGCACACATTCTTGCTGAAATGGTATGAGAAGTTTCCAACTTTCAGATCCCGAGAGCTGTTTCTTACTGGAGAAAGCTATGCAGGGCACTACATACCACAATTGGCTATTGCCATATTAGACCATAATAAAGAATCTAACTGGTTTCAAATTGGGAACCCACTGCTGAGACTTGATCGTGATGCTCCGGCAACATATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAATTGGCCTTACTATCATGAATGAATGCGATTTTGACGATTATGTCTATGCAAATCCGCACAATGTAAGCCTTGAATGCAACAAAGCAATATCTAAAGCAAATCAGAATAGTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

270

Amino Acids

30.02

Weight (kDa)

5.24

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	37 - 266	6.1e-81	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	429
AasI	GACNNNNNNGTC	1 cut(s)	734
AccB1I	GGYRCC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	125
AccIII	TCCGGA	1 cut(s)	330
AciI	CCGC	2 cut(s)	273, 749
AclWI	GGATC	2 cut(s)	99, 501
AcyI	GRCGYC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	88, 125
AgsI	TTSAA	4 cut(s)	133, 200, 608, 767
AhdI	GACNNNNNGTC	1 cut(s)	223
AhlI	ACTAGT	1 cut(s)	416
AjiI	CACGTC	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	3 cut(s)	170, 517, 537
AluI	AGCT	3 cut(s)	170, 517, 537
Alw26I	GTCTC	3 cut(s)	387, 622, 675
AlwI	GGATC	2 cut(s)	99, 501
Ama87I	CYCGRG	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	1 cut(s)	697
ApeKI	GCWGC	2 cut(s)	58, 211
Asp700I	GAANNNNTTC	1 cut(s)	682
AspS9I	GGNCC	2 cut(s)	251, 296
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	1 cut(s)	326
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	2 cut(s)	251, 296
BaeGI	GKGCMC	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	45, 223
BccI	CCATC	1 cut(s)	393
BciT130I	CCWGG	1 cut(s)	111
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	3 cut(s)	387, 622, 675
BcuI	ACTAGT	1 cut(s)	416
BfaI	CTAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	2 cut(s)	59, 212
BlsI	GCNGC	2 cut(s)	60, 213
Bme1390I	CCNGG	2 cut(s)	111, 255
Bme18I	GGWCC	2 cut(s)	251, 296
BmeRI	GACNNNNNGTC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	510
BmgBI	CACGTC	1 cut(s)	157
BmgT120I	GGNCC	2 cut(s)	251, 296
BmiI	GGNNCC	3 cut(s)	280, 297, 617
BmrFI	CCNGG	2 cut(s)	111, 255
BmsI	GCATC	3 cut(s)	368, 430, 631
BpmI	CTGGAG	2 cut(s)	411, 549
BpuMI	CCSGG	1 cut(s)	255
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	675
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 125
Bse1I	ACTGG	2 cut(s)	532, 605
BseAI	TCCGGA	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	254
BseGI	GGATG	3 cut(s)	166, 404, 445
BseLI	CCNNNNNNNGG	2 cut(s)	88, 125
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	2 cut(s)	532, 605
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	549
BseXI	GCAGC	2 cut(s)	45, 223
BseYI	CCCAGC	4 cut(s)	61, 82, 143, 170
BsgI	GTGCAG	1 cut(s)	87
BshFI	GGCC	1 cut(s)	699
BshNI	GGYRCC	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	3 cut(s)	254, 331, 647
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	2 cut(s)	88, 125
BsmAI	GTCTC	3 cut(s)	387, 622, 675
BsmFI	GGGAC	1 cut(s)	211
BsmI	GAATGC	2 cut(s)	722, 773
BsnI	GGCC	1 cut(s)	699
Bso31I	GGTCTC	1 cut(s)	675
BsoBI	CYCGRG	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	91, 506, 634
BspACI	CCGC	2 cut(s)	273, 749
BspANI	GGCC	1 cut(s)	699
BspCNI	CTCAG	1 cut(s)	618
BspEI	TCCGGA	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	3 cut(s)	280, 297, 617
BspPI	GGATC	2 cut(s)	99, 501
BspT107I	GGYRCC	1 cut(s)	278
BspTNI	GGTCTC	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	532, 605
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	3 cut(s)	91, 506, 634
BssNI	GRCGYC	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	2 cut(s)	138, 320
BstACI	GRCGYC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	166, 404, 445
BstKTI	GATC	3 cut(s)	94, 509, 637
BstMAI	GTCTC	3 cut(s)	387, 622, 675
BstMBI	GATC	3 cut(s)	91, 506, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 449, 768
BstNI	CCWGG	1 cut(s)	111
BstSCI	CCNGG	2 cut(s)	109, 253
BstSLI	GKGCMC	1 cut(s)	549
BstV1I	GCAGC	2 cut(s)	45, 223
BstX2I	RGATCY	2 cut(s)	91, 506
BstYI	RGATCY	2 cut(s)	91, 506
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	1 cut(s)	699
BtrI	CACGTC	1 cut(s)	157
BtsCI	GGATG	3 cut(s)	166, 404, 445
BtsI	GCAGTG	2 cut(s)	75, 620
BtsIMutI	CAGTG	2 cut(s)	75, 620
CciI	TCATGA	1 cut(s)	708
Cfr13I	GGNCC	2 cut(s)	251, 296
CseI	GACGC	1 cut(s)	316
CviAII	CATG	3 cut(s)	348, 674, 709
CviJI	RGCY	9 cut(s)	118, 170, 214, 241, 517, 537, 566, 699, 762
CviKI_1	RGCY	9 cut(s)	118, 170, 214, 241, 517, 537, 566, 699, 762
DdeI	CTNAG	1 cut(s)	626
DpnI	GATC	3 cut(s)	93, 508, 636
DpnII	GATC	3 cut(s)	91, 506, 634
DrdI	GACNNNNNNGTC	1 cut(s)	734
DriI	GACNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	734
Eam1105I	GACNNNNNGTC	1 cut(s)	223
EciI	GGCGGA	1 cut(s)	288
Eco31I	GGTCTC	1 cut(s)	675
Eco47I	GGWCC	2 cut(s)	251, 296
Eco88I	CYCGRG	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	351, 677, 712
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	347, 673, 708
FauNDI	CATATG	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	59, 212
FokI	GGATG	3 cut(s)	173, 411, 452
Fsp4HI	GCNGC	2 cut(s)	59, 212
FspBI	CTAG	1 cut(s)	417
GluI	GCNGC	2 cut(s)	59, 212
GsaI	CCCAGC	4 cut(s)	65, 86, 147, 174
GsuI	CTGGAG	2 cut(s)	411, 549
HaeIII	GGCC	1 cut(s)	699
HapII	CCGG	3 cut(s)	254, 331, 647
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	3 cut(s)	351, 677, 712
HincII	GTYRAC	1 cut(s)	154
HindII	GTYRAC	1 cut(s)	154
HinfI	GANTC	3 cut(s)	103, 380, 593
HpaII	CCGG	3 cut(s)	254, 331, 647
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	4 cut(s)	424, 506, 688, 798
Hpy188III	TCNNGA	4 cut(s)	331, 510, 638, 709
Hpy8I	GTNNAC	1 cut(s)	154
HpyCH4III	ACNGT	2 cut(s)	138, 320
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	6 cut(s)	68, 452, 463, 542, 743, 771
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 449, 768
HpyF3I	CTNAG	1 cut(s)	626
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	3 cut(s)	351, 677, 712
Kpn2I	TCCGGA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	91, 506, 634
LmnI	GCTCC	1 cut(s)	649
Lsp1109I	GCAGC	2 cut(s)	45, 223
LweI	GCATC	3 cut(s)	368, 430, 631
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	3 cut(s)	93, 508, 636
MboI	GATC	3 cut(s)	91, 506, 634
MboII	GAAGA	1 cut(s)	255
MfeI	CAATTG	1 cut(s)	560
MflI	RGATCY	2 cut(s)	91, 506
MhlI	GDGCHC	1 cut(s)	549
MluCI	AATT	3 cut(s)	560, 609, 693
MlyI	GAGTC	2 cut(s)	112, 389
MmeI	TCCRAC	2 cut(s)	332, 521
MnlI	CCTC	8 cut(s)	67, 82, 168, 239, 242, 269, 317, 454
MroI	TCCGGA	1 cut(s)	330
MroXI	GAANNNNTTC	1 cut(s)	682
MspI	CCGG	3 cut(s)	254, 331, 647
MspR9I	CCNGG	2 cut(s)	111, 255
MunI	CAATTG	1 cut(s)	560
Mva1269I	GAATGC	2 cut(s)	722, 773
MvaI	CCWGG	1 cut(s)	111
MwoI	GCNNNNNNNGC	3 cut(s)	115, 449, 768
NciI	CCSGG	1 cut(s)	255
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	91, 506, 634
NlaIII	CATG	3 cut(s)	351, 677, 712
NlaIV	GGNNCC	3 cut(s)	280, 297, 617
NmuCI	GTSAC	1 cut(s)	314
PagI	TCATGA	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PctI	GAATGC	2 cut(s)	722, 773
PdmI	GAANNNNTTC	1 cut(s)	682
PfeI	GAWTC	1 cut(s)	593
PflMI	CCANNNNNTGG	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	60, 213
PleI	GAGTC	2 cut(s)	111, 388
PpsI	GAGTC	2 cut(s)	111, 388
PsiI	TTATAA	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	109
PspFI	CCCAGC	4 cut(s)	61, 82, 143, 170
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	3 cut(s)	280, 297, 617
PspPI	GGNCC	2 cut(s)	251, 296
PsuI	RGATCY	2 cut(s)	91, 506
SatI	GCNGC	2 cut(s)	59, 212
Sau3AI	GATC	3 cut(s)	91, 506, 634
Sau96I	GGNCC	2 cut(s)	251, 296
SchI	GAGTC	2 cut(s)	112, 389
ScrFI	CCNGG	2 cut(s)	111, 255
SduI	GDGCHC	1 cut(s)	549
SetI	ASST	8 cut(s)	11, 159, 172, 253, 280, 316, 519, 539
SfaNI	GCATC	3 cut(s)	368, 430, 631
SinI	GGWCC	2 cut(s)	251, 296
SpeI	ACTAGT	1 cut(s)	416
Sse9I	AATT	3 cut(s)	560, 609, 693
SsiI	CCGC	2 cut(s)	273, 749
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	109, 253
TaaI	ACNGT	2 cut(s)	138, 320
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	1 cut(s)	410
TasI	AATT	3 cut(s)	560, 609, 693
TfiI	GAWTC	1 cut(s)	593
TscAI	CASTG	2 cut(s)	75, 627
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	58, 211
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	4 cut(s)	672, 705, 725, 729
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	75, 627
Van91I	CCANNNNNTGG	1 cut(s)	125
VpaK11BI	GGWCC	2 cut(s)	251, 296
XmnI	GAANNNNTTC	1 cut(s)	682
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.