Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

32222474 .. 32235803

Gene Structure 13330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGGGTTGTTTTGGTTTAGTGTAGTTTTAATTGGATTGGTGCTTGTTGGGGTTGAGGGGTACCCAGCTGAGGATCTGGTGGTGAAGTTGCCTGGTCAACCACAAGTTGGGTTTAAGCAGTATGCTGGGTATGTTGATGTGGATGTGAAAAATGGGAGGAGTTTGTTTTACTATTTTGTTGAAGCAGATAAGCAGCCTGATAAGAAGCCCCTATCTCTGTGGCTCAATGGAGGTCCAGGCTGTTCCTCTATTGGTGGAGGTGCCTTCATGGAGTTGGGTCCGTTTTACCCTACAGGTGATGGTCGAGGCCTCCGAAGAAACCCAATGTCCTGGAATAGAGCATCTAATCTCCTCTTTGTTGAGTCGCCTGCTGGAGTTGGATGGTCATACTCAAATACAAGTTCCGATTATAATTCTGGGGATGCCTCCACTGCAAGGGATATGCACACATTCTTGTTGAAATGGTATGAGAAGTTTCCAGCTTACAAATCTAGAGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCTCAATTGGCTGTTACTATATTGGACCATAATAAACATTCAACTGGTTTCAAGTTCAATCTCAAAGGGGTTGCTTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

206

Amino Acids

22.72

Weight (kDa)

7.73

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	31 - 204	7.9e-78	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	60
AccB1I	GGYRCC	2 cut(s)	60, 260
AccB7I	CCANNNNNTGG	1 cut(s)	107
AclWI	GGATC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	70, 107, 435
AgsI	TTSAA	5 cut(s)	182, 460, 579, 589, 595
AjnI	CCWGG	3 cut(s)	91, 235, 329
AluBI	AGCT	3 cut(s)	68, 482, 519
AluI	AGCT	3 cut(s)	68, 482, 519
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	193
Asp718I	GGTACC	1 cut(s)	60
AspS9I	GGNCC	3 cut(s)	233, 278, 562
AsuHPI	GGTGA	2 cut(s)	94, 308
AvaII	GGWCC	3 cut(s)	233, 278, 562
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	2 cut(s)	60, 260
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	293, 375
BciT130I	CCWGG	3 cut(s)	93, 237, 331
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	1 cut(s)	291
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	3 cut(s)	93, 237, 331
Bme18I	GGWCC	3 cut(s)	233, 278, 562
BmgT120I	GGNCC	3 cut(s)	233, 278, 562
BmiI	GGNNCC	3 cut(s)	62, 262, 279
BmrFI	CCNGG	3 cut(s)	93, 237, 331
BmsI	GCATC	2 cut(s)	350, 412
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	509
Bsc4I	CCNNNNNNNGG	3 cut(s)	70, 107, 435
Bse1I	ACTGG	1 cut(s)	586
BseBI	CCWGG	3 cut(s)	93, 237, 331
BseGI	GGATG	3 cut(s)	148, 386, 427
BseLI	CCNNNNNNNGG	3 cut(s)	70, 107, 435
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	586
BseRI	GAGGAG	2 cut(s)	172, 341
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	2 cut(s)	64, 125
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	2 cut(s)	60, 260
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	3 cut(s)	70, 107, 435
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	3 cut(s)	62, 262, 279
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	2 cut(s)	60, 260
BsrI	ACTGG	1 cut(s)	586
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	93, 237, 331
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	148, 386, 427
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	3 cut(s)	93, 237, 331
BstSCI	CCNGG	3 cut(s)	91, 235, 329
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	148, 386, 427
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	369
Cfr13I	GGNCC	3 cut(s)	233, 278, 562
Csp6I	GTAC	1 cut(s)	61
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	68, 196, 208, 223, 240, 309, 482, 519, 548
CviKI_1	RGCY	9 cut(s)	68, 196, 208, 223, 240, 309, 482, 519, 548
CviQI	GTAC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	3 cut(s)	233, 278, 562
EcoRII	CCWGG	3 cut(s)	91, 235, 329
FaeI	CATG	1 cut(s)	271
FatI	CATG	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	3 cut(s)	155, 393, 434
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	1 cut(s)	194
GsaI	CCCAGC	2 cut(s)	68, 129
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	510
Hin1II	CATG	1 cut(s)	271
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	2 cut(s)	94, 308
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	314, 406
Hpy188III	TCNNGA	1 cut(s)	492
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	274
HpyCH4V	TGCA	3 cut(s)	434, 445, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	64
Kzo9I	GATC	1 cut(s)	73
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	350, 412
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	327
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	3 cut(s)	30, 412, 542
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	358
MseI	TTAA	3 cut(s)	29, 114, 619
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	3 cut(s)	93, 237, 331
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	3 cut(s)	93, 237, 331
MwoI	GCNNNNNNNGC	1 cut(s)	431
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	62, 262, 279
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PflMI	CCANNNNNTGG	1 cut(s)	107
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	91, 235, 329
PspFI	CCCAGC	2 cut(s)	64, 125
PspGI	CCWGG	3 cut(s)	91, 235, 329
PspN4I	GGNNCC	3 cut(s)	62, 262, 279
PspPI	GGNCC	3 cut(s)	233, 278, 562
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SaqAI	TTAA	3 cut(s)	29, 114, 619
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	3 cut(s)	233, 278, 562
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	93, 237, 331
SduI	GDGCHC	1 cut(s)	531
SetI	ASST	7 cut(s)	70, 235, 262, 298, 484, 521, 541
SfaNI	GCATC	2 cut(s)	350, 412
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	3 cut(s)	233, 278, 562
Sse9I	AATT	3 cut(s)	30, 412, 542
SseBI	AGGCCT	1 cut(s)	309
SspMI	CTAG	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	91, 235, 329
TaqI	TCGA	1 cut(s)	304
TasI	AATT	3 cut(s)	30, 412, 542
Tru1I	TTAA	3 cut(s)	29, 114, 619
Tru9I	TTAA	3 cut(s)	29, 114, 619
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	436
Van91I	CCANNNNNTGG	1 cut(s)	107
VpaK11BI	GGWCC	3 cut(s)	233, 278, 562
XbaI	TCTAGA	1 cut(s)	491
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.