Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000656.1

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Forward (+)

88149 .. 90222

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000656.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggggttgttttggtttagtgtagctttgattggattggtgcttgttggggttgaggggtatccagctgaggatctggtggtgaagttgcctggtcagccacaagtggggtttaagcagtatgctgggtatgttgatgtggatgtgaaaaatgggaggagtttgttttactattttgttgaagcagataagcagcctgataagaagcccctatctctgtggctcaatggaggtccaggctgttcctctattggtggaggtgccttcatggagttgggtccgttttaccctacaggtgatggtcgaggcctccgaagaaacccaatgtcctggaatagagcatcaaatctcctctttgttgagtctcctgctggagttggatggtcatactcaaatacaagttccgattataattctggggatgcctccactgggcactacataccgcaattggctgttgctatattggaccataataaacattcaactggtttcaagttcaatctcaaaggggttgctattgggaatccacttctgaaacttgatcgtgatataccggcaacatatggatcgttgcctcactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

194

Amino Acids

20.96

Weight (kDa)

6.9

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	260
AciI	CCGC	1 cut(s)	446
AclWI	GGATC	2 cut(s)	81, 577
AfiI	CCNNNNNNNGG	2 cut(s)	107, 432
AgsI	TTSAA	4 cut(s)	182, 486, 496, 502
AjnI	CCWGG	3 cut(s)	91, 235, 329
AluBI	AGCT	2 cut(s)	26, 68
AluI	AGCT	2 cut(s)	26, 68
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	81, 577
AoxI	GGCC	1 cut(s)	307
ApeKI	GCWGC	1 cut(s)	193
AspS9I	GGNCC	3 cut(s)	233, 278, 469
AsuHPI	GGTGA	2 cut(s)	94, 308
AvaII	GGWCC	3 cut(s)	233, 278, 469
BaeGI	GKGCMC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	2 cut(s)	293, 375
BciT130I	CCWGG	3 cut(s)	93, 237, 331
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
Bme1390I	CCNGG	3 cut(s)	93, 237, 331
Bme18I	GGWCC	3 cut(s)	233, 278, 469
BmgT120I	GGNCC	3 cut(s)	233, 278, 469
BmiI	GGNNCC	2 cut(s)	262, 279
BmrFI	CCNGG	3 cut(s)	93, 237, 331
BmrI	ACTGGG	1 cut(s)	441
BmsI	GCATC	2 cut(s)	350, 412
BmuI	ACTGGG	1 cut(s)	441
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 432
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	436, 493
BseBI	CCWGG	3 cut(s)	93, 237, 331
BseGI	GGATG	3 cut(s)	148, 386, 427
BseLI	CCNNNNNNNGG	2 cut(s)	107, 432
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	2 cut(s)	436, 493
BseRI	GAGGAG	2 cut(s)	172, 341
BseSI	GKGCMC	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	205
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	557
BslI	CCNNNNNNNGG	2 cut(s)	107, 432
BsmAI	GTCTC	1 cut(s)	369
BsnI	GGCC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	438
Bsp143I	GATC	3 cut(s)	73, 544, 569
BspACI	CCGC	1 cut(s)	446
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	262, 279
BspPI	GGATC	2 cut(s)	81, 577
BspT107I	GGYRCC	1 cut(s)	260
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	2 cut(s)	436, 493
BssAI	RCCGGY	1 cut(s)	556
BssMI	GATC	3 cut(s)	73, 544, 569
Bst2UI	CCWGG	3 cut(s)	93, 237, 331
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	148, 386, 427
BstKTI	GATC	3 cut(s)	76, 547, 572
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	3 cut(s)	73, 544, 569
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	3 cut(s)	93, 237, 331
BstSCI	CCNGG	3 cut(s)	91, 235, 329
BstSFI	CTRYAG	1 cut(s)	291
BstSLI	GKGCMC	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	205
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	148, 386, 427
BtsIMutI	CAGTG	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	233, 278, 469
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	9 cut(s)	26, 68, 100, 196, 208, 223, 240, 309, 455
CviKI_1	RGCY	9 cut(s)	26, 68, 100, 196, 208, 223, 240, 309, 455
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	3 cut(s)	75, 546, 571
DpnII	GATC	3 cut(s)	73, 544, 569
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	3 cut(s)	233, 278, 469
EcoRII	CCWGG	3 cut(s)	91, 235, 329
FaeI	CATG	1 cut(s)	271
FatI	CATG	1 cut(s)	267
FauNDI	CATATG	1 cut(s)	565
Fnu4HI	GCNGC	1 cut(s)	194
FokI	GGATG	3 cut(s)	155, 393, 434
Fsp4HI	GCNGC	1 cut(s)	194
GluI	GCNGC	1 cut(s)	194
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	1 cut(s)	557
Hin1II	CATG	1 cut(s)	271
HinfI	GANTC	2 cut(s)	362, 526
HpaII	CCGG	1 cut(s)	557
HphI	GGTGA	2 cut(s)	94, 308
Hpy188I	TCNGA	3 cut(s)	314, 406, 537
Hpy188III	TCNNGA	1 cut(s)	548
HpyAV	CCTTC	1 cut(s)	274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	271
Kzo9I	GATC	3 cut(s)	73, 544, 569
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	2 cut(s)	350, 412
MalI	GATC	3 cut(s)	75, 546, 571
MboI	GATC	3 cut(s)	73, 544, 569
MboII	GAAGA	1 cut(s)	327
MfeI	CAATTG	1 cut(s)	449
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	438
MluCI	AATT	2 cut(s)	412, 449
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	358
MseI	TTAA	1 cut(s)	114
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	557
MspR9I	CCNGG	3 cut(s)	93, 237, 331
MunI	CAATTG	1 cut(s)	449
MvaI	CCWGG	3 cut(s)	93, 237, 331
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeI	CATATG	1 cut(s)	565
NdeII	GATC	3 cut(s)	73, 544, 569
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	262, 279
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	526
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	1 cut(s)	195
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	3 cut(s)	91, 235, 329
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	91, 235, 329
PspN4I	GGNNCC	2 cut(s)	262, 279
PspPI	GGNCC	3 cut(s)	233, 278, 469
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	3 cut(s)	73, 544, 569
Sau96I	GGNCC	3 cut(s)	233, 278, 469
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	93, 237, 331
SduI	GDGCHC	1 cut(s)	438
SetI	ASST	5 cut(s)	28, 70, 235, 262, 298
SfaNI	GCATC	2 cut(s)	350, 412
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	3 cut(s)	233, 278, 469
Sse9I	AATT	2 cut(s)	412, 449
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	1 cut(s)	446
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	91, 235, 329
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	412, 449
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	256
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	3 cut(s)	233, 278, 469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.