Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1049550 .. 1052385

Gene Structure 2836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00860.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGGTAGGTGTTATTTTAGTGGGATTTTGACTGTGTTGTTGGGGTGTGTGTGGTTGGTGCTGCTGGGTGCAGTGGAGGGATACCCAGCAGAAGATCTGGTAGTGAGTCTGCCTGGTCAGCCAAGTGTTGGGTTCAAACAGTATGCTGGGTATGTTGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCAGATAAGCAGCCTGACAGGAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCGGGGTGTTCTTCCATCGGCGGAGGTGCCTTTACGGAGTTGGGTCCATTTTATCCAACAGGTGACGGTAGAGGCCTCAGGACAAATAAAATGTCATGGAACAGAGCATCAAATCTCCTTTTTGTTGAGTCTCCTGCTGGAGTAGGATGGTCATACTCGAATACAAGTTCAGATTATAACTCTGGGGATGCCTCAACTGCAAGAGATATGCACACATTCTTGCTGAAATGGTATGAGAAGTTTCCAACTTTCAGATCCCGAGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCGCAATTGGCCATTGCCATATTAGACCATAATAAACAATCAACTGGTTTCAAGTTCAATCTTAAAGGGGTTGCTATTGGGAATCCACTGCTGAGACCTGATCATCATGCTCGGGCAACATATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAATTGGCCTTACTATCATGAACGAATGCGATTTTGACGATTATGTCTCTGCAAATACTCACAATGCTACTAAGATAAGTGTTGGAGTTGATGTATGTATGACGTATGAAAGACGGTTTTATTTGAACCTTCCTGAAGTTCAGGAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATACTTGGAGTATGTGCAGTGGCGATACTGATTGGAACATCAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAATCATATTCCCATTTGGGTTTTCAGTGGGGATCAAGATTCTGTGGTACCATTATTGGGCTCCCGGACACTGATACGTGAACTAGCACATGACCTAAAGTTCCCGATAACAGTCCCATACGGAGCTTGGTTTCACAAGGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATCTGTTGACATTTGCCACAGTAAGGGGCGCTGCTCATATGGTCCCCTATGCTCAACCTTCAAGAGCATTGCGCCTCTTCAGTTCATTTGTTCATGGTCGAAGATTGCCCAACACAACGCTTCCTTCCATTTACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

426

Amino Acids

47.45

Weight (kDa)

6.5

Isoelectric Point (pI)

45.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AasI	GACNNNNNNGTC	1 cut(s)	758
Acc65I	GGTACC	1 cut(s)	1012
AccB1I	GGYRCC	2 cut(s)	281, 1012
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	3 cut(s)	276, 560, 1116
AclWI	GGATC	2 cut(s)	504, 1005
AcoI	YGGCCR	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	870, 1201
AfaI	GTAC	3 cut(s)	880, 1014, 1133
AfiI	CCNNNNNNNGG	3 cut(s)	128, 1022, 1161
AgsI	TTSAA	7 cut(s)	136, 203, 610, 616, 841, 965, 1200
AjnI	CCWGG	2 cut(s)	112, 1107
AluBI	AGCT	3 cut(s)	173, 540, 1091
AluI	AGCT	3 cut(s)	173, 540, 1091
Alw26I	GTCTC	4 cut(s)	390, 646, 699, 766
AlwI	GGATC	2 cut(s)	504, 1005
Ama87I	CYCGRG	2 cut(s)	513, 669
AoxI	GGCC	4 cut(s)	328, 567, 721, 1105
ApeKI	GCWGC	3 cut(s)	61, 214, 1169
ArsI	GACNNNNNNTTYG	2 cut(s)	332, 364
Asp700I	GAANNNNTTC	2 cut(s)	706, 864
Asp718I	GGTACC	1 cut(s)	1012
AspLEI	GCGC	2 cut(s)	1169, 1212
AspS9I	GGNCC	4 cut(s)	254, 299, 1105, 1180
AsuC2I	CCSGG	2 cut(s)	258, 1030
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	2 cut(s)	513, 669
AvaII	GGWCC	3 cut(s)	254, 299, 1180
AxyI	CCTNAGG	1 cut(s)	332
BaeGI	GKGCMC	1 cut(s)	552
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	2 cut(s)	281, 1012
BanII	GRGCYC	1 cut(s)	1028
BbvI	GCAGC	3 cut(s)	48, 226, 1156
BccI	CCATC	2 cut(s)	278, 396
BciT130I	CCWGG	2 cut(s)	114, 1109
BciVI	GTATCC	1 cut(s)	74
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	2 cut(s)	258, 1030
BcoDI	GTCTC	4 cut(s)	390, 646, 699, 766
BfaI	CTAG	1 cut(s)	1049
BfmI	CTRYAG	1 cut(s)	1125
BfoI	RGCGCY	1 cut(s)	1170
BfuI	GTATCC	1 cut(s)	74
BglI	GCCNNNNNGGC	1 cut(s)	1113
BglII	AGATCT	1 cut(s)	94
BisI	GCNGC	3 cut(s)	62, 215, 1170
BlsI	GCNGC	3 cut(s)	63, 216, 1171
Bme1390I	CCNGG	4 cut(s)	114, 258, 1030, 1109
Bme18I	GGWCC	3 cut(s)	254, 299, 1180
BmeT110I	CYCGRG	2 cut(s)	513, 669
BmgT120I	GGNCC	4 cut(s)	254, 299, 1105, 1180
BmiI	GGNNCC	5 cut(s)	283, 300, 1014, 1027, 1182
BmrFI	CCNGG	4 cut(s)	114, 258, 1030, 1109
BmsI	GCATC	2 cut(s)	371, 433
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	258, 1030
BsaAI	YACGTR	1 cut(s)	1043
BsaI	GGTCTC	2 cut(s)	646, 699
BsaJI	CCNNGG	1 cut(s)	257
BsaWI	WCCGGW	1 cut(s)	530
BsaXI	ACNNNNNCTCC	2 cut(s)	792, 822
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 1022, 1161
Bse1I	ACTGG	1 cut(s)	607
Bse21I	CCTNAGG	1 cut(s)	332
Bse3DI	GCAATG	2 cut(s)	570, 1205
BseBI	CCWGG	2 cut(s)	114, 1109
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	4 cut(s)	169, 407, 448, 936
BseLI	CCNNNNNNNGG	3 cut(s)	128, 1022, 1161
BseMI	GCAATG	2 cut(s)	570, 1205
BseMII	CTCAG	2 cut(s)	346, 641
BseNI	ACTGG	1 cut(s)	607
BseRI	GAGGAG	1 cut(s)	193
BseSI	GKGCMC	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	48, 226, 1156
BseYI	CCCAGC	4 cut(s)	64, 85, 146, 173
BsgI	GTGCAG	2 cut(s)	90, 928
BshFI	GGCC	4 cut(s)	330, 569, 723, 1107
BshNI	GGYRCC	2 cut(s)	281, 1012
BsiHKCI	CYCGRG	2 cut(s)	513, 669
BsiSI	CCGG	3 cut(s)	257, 531, 1030
BslFI	GGGAC	2 cut(s)	1064, 1166
BslI	CCNNNNNNNGG	3 cut(s)	128, 1022, 1161
BsmAI	GTCTC	4 cut(s)	390, 646, 699, 766
BsmFI	GGGAC	2 cut(s)	1064, 1166
BsmI	GAATGC	1 cut(s)	746
BsnI	GGCC	4 cut(s)	330, 569, 723, 1107
Bso31I	GGTCTC	2 cut(s)	646, 699
BsoBI	CYCGRG	2 cut(s)	513, 669
Bsp1286I	GDGCHC	2 cut(s)	552, 1028
Bsp143I	GATC	4 cut(s)	94, 509, 658, 997
BspACI	CCGC	3 cut(s)	276, 560, 1116
BspANI	GGCC	4 cut(s)	330, 569, 723, 1107
BspCNI	CTCAG	2 cut(s)	345, 642
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	5 cut(s)	283, 300, 1014, 1027, 1182
BspPI	GGATC	2 cut(s)	504, 1005
BspT107I	GGYRCC	2 cut(s)	281, 1012
BspTNI	GGTCTC	2 cut(s)	646, 699
BsrDI	GCAATG	2 cut(s)	570, 1205
BsrI	ACTGG	1 cut(s)	607
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	4 cut(s)	94, 509, 658, 997
Bst2UI	CCWGG	2 cut(s)	114, 1109
Bst4CI	ACNGT	6 cut(s)	34, 141, 323, 831, 1078, 1159
Bst6I	CTCTTC	1 cut(s)	1220
BstBAI	YACGTR	1 cut(s)	1043
BstDEI	CTNAG	3 cut(s)	332, 650, 786
BstF5I	GGATG	4 cut(s)	169, 407, 448, 936
BstH2I	RGCGCY	1 cut(s)	1170
BstHHI	GCGC	2 cut(s)	1169, 1212
BstKTI	GATC	4 cut(s)	97, 512, 661, 1000
BstMAI	GTCTC	4 cut(s)	390, 646, 699, 766
BstMBI	GATC	4 cut(s)	94, 509, 658, 997
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 452, 869, 1113
BstNI	CCWGG	2 cut(s)	114, 1109
BstSCI	CCNGG	4 cut(s)	112, 256, 1028, 1107
BstSFI	CTRYAG	1 cut(s)	1125
BstSLI	GKGCMC	1 cut(s)	552
BstV1I	GCAGC	3 cut(s)	48, 226, 1156
BstX2I	RGATCY	2 cut(s)	94, 509
BstYI	RGATCY	2 cut(s)	94, 509
Bsu36I	CCTNAGG	1 cut(s)	332
BsuI	GTATCC	1 cut(s)	74
BsuRI	GGCC	4 cut(s)	330, 569, 723, 1107
BtsCI	GGATG	4 cut(s)	169, 407, 448, 936
BtsI	GCAGTG	3 cut(s)	78, 644, 916
BtsIMutI	CAGTG	5 cut(s)	78, 644, 916, 997, 1034
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	2 cut(s)	1169, 1212
Cfr13I	GGNCC	4 cut(s)	254, 299, 1105, 1180
Csp6I	GTAC	3 cut(s)	879, 1013, 1132
CviAII	CATG	7 cut(s)	351, 665, 698, 733, 869, 1055, 1232
CviQI	GTAC	3 cut(s)	879, 1013, 1132
DdeI	CTNAG	3 cut(s)	332, 650, 786
DpnI	GATC	4 cut(s)	96, 511, 660, 999
DpnII	GATC	4 cut(s)	94, 509, 658, 997
DrdI	GACNNNNNNGTC	1 cut(s)	758
DseDI	GACNNNNNNGTC	1 cut(s)	758
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	1220
EarI	CTCTTC	1 cut(s)	1220
EciI	GGCGGA	1 cut(s)	291
Eco147I	AGGCCT	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	1028
Eco31I	GGTCTC	2 cut(s)	646, 699
Eco47I	GGWCC	3 cut(s)	254, 299, 1180
Eco57I	CTGAAG	2 cut(s)	870, 1201
Eco81I	CCTNAGG	1 cut(s)	332
Eco88I	CYCGRG	2 cut(s)	513, 669
EcoRII	CCWGG	2 cut(s)	112, 1107
EcoT38I	GRGCYC	1 cut(s)	1028
FaeI	CATG	7 cut(s)	354, 668, 701, 736, 872, 1058, 1235
FaqI	GGGAC	2 cut(s)	1064, 1166
FatI	CATG	7 cut(s)	350, 664, 697, 732, 868, 1054, 1231
FauNDI	CATATG	2 cut(s)	679, 1176
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	62, 215, 1170
FokI	GGATG	4 cut(s)	176, 414, 455, 923
FriOI	GRGCYC	1 cut(s)	1028
Fsp4HI	GCNGC	3 cut(s)	62, 215, 1170
FspBI	CTAG	1 cut(s)	1049
GlaI	GCGC	2 cut(s)	1168, 1211
GluI	GCNGC	3 cut(s)	62, 215, 1170
GsaI	CCCAGC	4 cut(s)	68, 89, 150, 177
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	1170
HaeIII	GGCC	4 cut(s)	330, 569, 723, 1107
HapII	CCGG	3 cut(s)	257, 531, 1030
HhaI	GCGC	2 cut(s)	1169, 1212
Hin1II	CATG	7 cut(s)	354, 668, 701, 736, 872, 1058, 1235
Hin6I	GCGC	2 cut(s)	1167, 1210
HinP1I	GCGC	2 cut(s)	1167, 1210
HincII	GTYRAC	1 cut(s)	1146
HindII	GTYRAC	1 cut(s)	1146
HinfI	GANTC	4 cut(s)	106, 383, 640, 1004
HpaII	CCGG	3 cut(s)	257, 531, 1030
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	1046, 1146
Hpy188I	TCNGA	3 cut(s)	427, 509, 712
Hpy188III	TCNNGA	8 cut(s)	334, 513, 733, 848, 857, 1001, 1069, 1200
Hpy8I	GTNNAC	2 cut(s)	1046, 1146
HpyAV	CCTTC	5 cut(s)	854, 875, 950, 1206, 1272
HpyCH4III	ACNGT	6 cut(s)	34, 141, 323, 831, 1078, 1159
HpyCH4IV	ACGT	2 cut(s)	818, 1042
HpyCH4V	TGCA	7 cut(s)	71, 455, 466, 545, 767, 872, 909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 452, 869, 1113
HpyF3I	CTNAG	3 cut(s)	332, 650, 786
HpySE526I	ACGT	2 cut(s)	818, 1042
Hsp92II	CATG	7 cut(s)	354, 668, 701, 736, 872, 1058, 1235
HspAI	GCGC	2 cut(s)	1167, 1210
KpnI	GGTACC	1 cut(s)	1016
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	4 cut(s)	94, 509, 658, 997
LmnI	GCTCC	2 cut(s)	1031, 1088
Lsp1109I	GCAGC	3 cut(s)	48, 226, 1156
LweI	GCATC	2 cut(s)	371, 433
MaeI	CTAG	1 cut(s)	1049
MaeII	ACGT	2 cut(s)	818, 1042
MaeIII	GTNAC	1 cut(s)	317
MalI	GATC	4 cut(s)	96, 511, 660, 999
MboI	GATC	4 cut(s)	94, 509, 658, 997
MboII	GAAGA	4 cut(s)	104, 258, 1207, 1251
MfeI	CAATTG	1 cut(s)	563
MflI	RGATCY	2 cut(s)	94, 509
MhlI	GDGCHC	2 cut(s)	552, 1028
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	2 cut(s)	563, 717
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	2 cut(s)	115, 392
MmeI	TCCRAC	3 cut(s)	335, 524, 778
MnlI	CCTC	9 cut(s)	70, 171, 242, 245, 272, 320, 341, 457, 1223
Mox20I	TGGCCA	1 cut(s)	569
MroXI	GAANNNNTTC	2 cut(s)	706, 864
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	1 cut(s)	621
Msp20I	TGGCCA	1 cut(s)	569
MspI	CCGG	3 cut(s)	257, 531, 1030
MspR9I	CCNGG	4 cut(s)	114, 258, 1030, 1109
MunI	CAATTG	1 cut(s)	563
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	2 cut(s)	114, 1109
MwoI	GCNNNNNNNGC	4 cut(s)	118, 452, 869, 1113
NciI	CCSGG	2 cut(s)	258, 1030
NdeI	CATATG	2 cut(s)	679, 1176
NdeII	GATC	4 cut(s)	94, 509, 658, 997
NlaIII	CATG	7 cut(s)	354, 668, 701, 736, 872, 1058, 1235
NlaIV	GGNNCC	5 cut(s)	283, 300, 1014, 1027, 1182
NmuCI	GTSAC	1 cut(s)	317
PagI	TCATGA	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	330
PctI	GAATGC	1 cut(s)	746
PdmI	GAANNNNTTC	2 cut(s)	706, 864
PfeI	GAWTC	2 cut(s)	640, 1004
PflMI	CCANNNNNTGG	1 cut(s)	128
PfoI	TCCNGGA	1 cut(s)	1028
PkrI	GCNGC	3 cut(s)	63, 216, 1171
PleI	GAGTC	2 cut(s)	114, 391
PpsI	GAGTC	2 cut(s)	114, 391
Ppu21I	YACGTR	1 cut(s)	1043
PsiI	TTATAA	1 cut(s)	432
Psp6I	CCWGG	2 cut(s)	112, 1107
PspFI	CCCAGC	4 cut(s)	64, 85, 146, 173
PspGI	CCWGG	2 cut(s)	112, 1107
PspN4I	GGNNCC	5 cut(s)	283, 300, 1014, 1027, 1182
PspPI	GGNCC	4 cut(s)	254, 299, 1105, 1180
PsuI	RGATCY	2 cut(s)	94, 509
RsaI	GTAC	3 cut(s)	880, 1014, 1133
RsaNI	GTAC	3 cut(s)	879, 1013, 1132
SaqAI	TTAA	1 cut(s)	621
SatI	GCNGC	3 cut(s)	62, 215, 1170
Sau3AI	GATC	4 cut(s)	94, 509, 658, 997
Sau96I	GGNCC	4 cut(s)	254, 299, 1105, 1180
SchI	GAGTC	2 cut(s)	115, 392
ScrFI	CCNGG	4 cut(s)	114, 258, 1030, 1109
SduI	GDGCHC	2 cut(s)	552, 1028
SfaNI	GCATC	2 cut(s)	371, 433
SfcI	CTRYAG	1 cut(s)	1125
SinI	GGWCC	3 cut(s)	254, 299, 1180
Sse9I	AATT	2 cut(s)	563, 717
SseBI	AGGCCT	1 cut(s)	330
SsiI	CCGC	3 cut(s)	276, 560, 1116
SspMI	CTAG	1 cut(s)	1049
StuI	AGGCCT	1 cut(s)	330
StyD4I	CCNGG	4 cut(s)	112, 256, 1028, 1107
TaaI	ACNGT	6 cut(s)	34, 141, 323, 831, 1078, 1159
TaiI	ACGT	2 cut(s)	821, 1045
TaqI	TCGA	2 cut(s)	413, 1237
TasI	AATT	2 cut(s)	563, 717
TfiI	GAWTC	2 cut(s)	640, 1004
Tru1I	TTAA	1 cut(s)	621
Tru9I	TTAA	1 cut(s)	621
TscAI	CASTG	5 cut(s)	78, 651, 916, 997, 1041
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	3 cut(s)	61, 214, 1169
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	7 cut(s)	696, 729, 749, 837, 857, 1212, 1220
TspGWI	ACGGA	3 cut(s)	305, 1101, 1149
TspRI	CASTG	5 cut(s)	78, 651, 916, 997, 1041
Van91I	CCANNNNNTGG	1 cut(s)	128
VpaK11BI	GGWCC	3 cut(s)	254, 299, 1180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1089
XmnI	GAANNNNTTC	2 cut(s)	706, 864
XspI	CTAG	1 cut(s)	1049

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.