Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006244.1

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

224335 .. 225629

Gene Structure 1295 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006244.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggggttgttttggtttagtgtagctttgattggattggtgcttgttggggttgaggggtatccagctgaggatctggtggtgaagttgcctggtcagccacaagtggggtttaagcagtatgctgggtatgttgatgtggatgtgaaaaatgggaggagtttgttttactattttgttgaagcagataagcagcctgataagaagcccctatctctgtggctcaatggaggtccaggctgttcctctattggtggaggtgccttcacagagttgggtcctttttaccctacaggtgatggtcgaggcctccgaagaaacccaatgtcctggaatagagcatcaaatctcctctttgttgagtctcctgctggagttggatggtcatactcaaatacaagttccgattataattctggggatgcctccactggtaaatttaatagctgcattcatactctttcttttcacttatgcaagtacgtgcttttcaatgtgtctgcttttggccattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

172

Amino Acids

18.74

Weight (kDa)

6.81

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	260
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	482
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	182, 493
AjnI	CCWGG	3 cut(s)	91, 235, 329
AluBI	AGCT	3 cut(s)	26, 68, 447
AluI	AGCT	3 cut(s)	26, 68, 447
Alw26I	GTCTC	1 cut(s)	369
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	2 cut(s)	307, 508
ApeKI	GCWGC	2 cut(s)	193, 447
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	2 cut(s)	233, 278
AsuHPI	GGTGA	2 cut(s)	94, 308
AvaII	GGWCC	2 cut(s)	233, 278
BalI	TGGCCA	1 cut(s)	510
BanI	GGYRCC	1 cut(s)	260
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	205, 434
BccI	CCATC	2 cut(s)	293, 375
BciT130I	CCWGG	3 cut(s)	93, 237, 331
BciVI	GTATCC	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	291
BfuI	GTATCC	1 cut(s)	72
BisI	GCNGC	2 cut(s)	194, 448
BlsI	GCNGC	2 cut(s)	195, 449
Bme1390I	CCNGG	3 cut(s)	93, 237, 331
Bme18I	GGWCC	2 cut(s)	233, 278
BmgT120I	GGNCC	2 cut(s)	233, 278
BmiI	GGNNCC	2 cut(s)	262, 279
BmrFI	CCNGG	3 cut(s)	93, 237, 331
BmsI	GCATC	2 cut(s)	350, 412
BpmI	CTGGAG	1 cut(s)	393
Bpu10I	CCTNAGC	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse1I	ACTGG	1 cut(s)	436
BseBI	CCWGG	3 cut(s)	93, 237, 331
BseGI	GGATG	3 cut(s)	148, 386, 427
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	2 cut(s)	172, 341
BseXI	GCAGC	2 cut(s)	205, 434
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	2 cut(s)	309, 510
BshNI	GGYRCC	1 cut(s)	260
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	450
BsnI	GGCC	2 cut(s)	309, 510
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	2 cut(s)	309, 510
BspCNI	CTCAG	1 cut(s)	61
BspLI	GGNNCC	2 cut(s)	262, 279
BspPI	GGATC	1 cut(s)	81
BspT107I	GGYRCC	1 cut(s)	260
BsrI	ACTGG	1 cut(s)	436
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	93, 237, 331
BstBAI	YACGTR	1 cut(s)	484
BstDEI	CTNAG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	148, 386, 427
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	3 cut(s)	93, 237, 331
BstSCI	CCNGG	3 cut(s)	91, 235, 329
BstSFI	CTRYAG	1 cut(s)	291
BstV1I	GCAGC	2 cut(s)	205, 434
BstX2I	RGATCY	1 cut(s)	73
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	73
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	309, 510
BtsCI	GGATG	3 cut(s)	148, 386, 427
BtsIMutI	CAGTG	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	233, 278
Csp6I	GTAC	1 cut(s)	481
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	508
Eco147I	AGGCCT	1 cut(s)	309
Eco47I	GGWCC	2 cut(s)	233, 278
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRII	CCWGG	3 cut(s)	91, 235, 329
FaiI	YATR	6 cut(s)	123, 132, 388, 411, 456, 475
Fnu4HI	GCNGC	2 cut(s)	194, 448
FokI	GGATG	3 cut(s)	155, 393, 434
Fsp4HI	GCNGC	2 cut(s)	194, 448
GluI	GCNGC	2 cut(s)	194, 448
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	1 cut(s)	393
HaeIII	GGCC	2 cut(s)	309, 510
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	2 cut(s)	94, 308
Hpy188I	TCNGA	2 cut(s)	314, 406
HpyAV	CCTTC	1 cut(s)	274
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	2 cut(s)	450, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	483
Kzo9I	GATC	1 cut(s)	73
Lsp1109I	GCAGC	2 cut(s)	205, 434
LweI	GCATC	2 cut(s)	350, 412
MaeII	ACGT	1 cut(s)	483
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	327
MflI	RGATCY	1 cut(s)	73
MlsI	TGGCCA	1 cut(s)	510
MluCI	AATT	2 cut(s)	412, 437
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	1 cut(s)	358
Mox20I	TGGCCA	1 cut(s)	510
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	2 cut(s)	114, 441
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	68
MspR9I	CCNGG	3 cut(s)	93, 237, 331
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	3 cut(s)	93, 237, 331
MwoI	GCNNNNNNNGC	1 cut(s)	97
NdeII	GATC	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	262, 279
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	450
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	195, 449
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Ppu21I	YACGTR	1 cut(s)	484
PpuMI	RGGWCCY	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	411
Psp5II	RGGWCCY	1 cut(s)	278
Psp6I	CCWGG	3 cut(s)	91, 235, 329
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	3 cut(s)	91, 235, 329
PspN4I	GGNNCC	2 cut(s)	262, 279
PspPI	GGNCC	2 cut(s)	233, 278
PspPPI	RGGWCCY	1 cut(s)	278
PsuI	RGATCY	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
SaqAI	TTAA	2 cut(s)	114, 441
SatI	GCNGC	2 cut(s)	194, 448
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	2 cut(s)	233, 278
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	3 cut(s)	93, 237, 331
SetI	ASST	7 cut(s)	28, 70, 235, 262, 298, 449, 486
SfaNI	GCATC	2 cut(s)	350, 412
SfcI	CTRYAG	1 cut(s)	291
SinI	GGWCC	2 cut(s)	233, 278
Sse9I	AATT	2 cut(s)	412, 437
SseBI	AGGCCT	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	3 cut(s)	91, 235, 329
TaiI	ACGT	1 cut(s)	486
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	412, 437
Tru1I	TTAA	2 cut(s)	114, 441
Tru9I	TTAA	2 cut(s)	114, 441
TscAI	CASTG	1 cut(s)	436
TseI	GCWGC	2 cut(s)	193, 447
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	2 cut(s)	233, 278
XapI	RAATTY	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.