MD10G1015500.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
2058041 .. 2061379
3339 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1015500.v1.1.491

Sequence Viewer

Length: 1422 bp
ATGTGTAGGTGTTGGTTTAGTGGGGTTTTGATTGTGTTGGAGTGTGTGTGGTTGGTGCTGCTGGGTGCAGTGGAGGGATACCCAGCTGAGGATCTGGTGGTGAGCCTGCCTGGTCAGCCAAGTGTTGGGTTCAAGCAGTATGCTGGGTATGTTGATGTGGATGTGAAAGCTGGGAGGAGCTTGTTTTACTACTTTGTTGAAGCAGATGAGCAGCCTGACAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGTCCAGGTTGTTCCTCCGTTGGCGGAGGTGCCTTTACCGAGCTGGGTCCATTTTATCCAACAGGTGACGGCAGAGGCCTCCGGAGAAATCCAATGTCATGGAACAGAGCATCAAATCTCCTTTTTGTTGAGTCTCCTGCTGGAGTAGGATGGTCATACTCGAATACAAGTTCGGATTATGACTCTGGGGATGCCTCAACTGCAAGGGATATGCACACATTCTTGATGAAATGGTATGAAAAGTTTCCAACTTTCAGATCCCGAGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCGCAATTAGCTATTGCCATTTTGGACCATAATAAACAATCAACTGGTTTCAAGTTCAATCTCAAAGGGGTTGCTCTTGGGAATCCACTGCTGAGACTTGATCGTGATGCTCCGGCAACATATGAATATTTTTGGTCTCATGGAATGATTTCTGATGAAACTGGCCTTACTATCATGAACGAATGCGATTTTGACGATTATGTCTTGGGAAATCCTCACAATGTAAGCCATCAATGCAACAAAGCAATATCTCAAGCCAATCAGATAGTTGGTGAGTACATAAACAATTACGACGTGATTCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAGTTGAGACTGCGGAAAATGGCTACTAAGATAAGTGTTGGAGTTGATGTATGTATGACGTTTGAAAGACGTTTTTATTTGAACCTTCCCGAAGTTCAGAAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATCCATGGAGTATGTGCAGTCGCATTCTTAATTACAGCGATACAGATGGTAGCATTAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAACCGTATACCCGTTTGGGTTTTCAGTGGGGATCAAGATTCCGTTGTACCATTATTGGGCTCTCGGACACTGGTGCGTGAACTAGCACACGACCTAAAGTTCCCGATAACAGTCCCATACGGAGCTTGGTTTCACAAAGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATCTGTTGACGTTTGCCACGGTAAGGGGGGCTGCTCATATGGTGCCCTATGCTCAACCTTCAAGAGCACTGCACCTCTTCAGTGCATTTGTTCGTGGTCGGAGACTGCCCAACACAGCGCGTCCTTCCATTGACGAGTAA

Protein Analysis

474

Amino Acids

52.95

Weight (kDa)

6.14

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 37 - 460 4.8e-136 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 755
AccB1I GGYRCC 2 cut(s) 278, 1324
AccB7I CCANNNNNTGG 1 cut(s) 125
AccI GTMKAC 1 cut(s) 1117
AccII CGCG 1 cut(s) 1402
AccIII TCCGGA 1 cut(s) 330
AciI CCGC 4 cut(s) 273, 557, 901, 1260
AclWI GGATC 3 cut(s) 99, 501, 1149
AcuI CTGAAG 1 cut(s) 1345
AfaI GTAC 4 cut(s) 833, 1009, 1158, 1277
AfiI CCNNNNNNNGG 4 cut(s) 88, 125, 1166, 1305
AgsI TTSAA 8 cut(s) 133, 200, 607, 613, 953, 970, 1109, 1344
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 3 cut(s) 109, 253, 1251
AluBI AGCT 7 cut(s) 86, 170, 180, 292, 537, 566, 1235
AluI AGCT 7 cut(s) 86, 170, 180, 292, 537, 566, 1235
Alw21I GWGCWC 1 cut(s) 1351
Alw26I GTCTC 5 cut(s) 387, 643, 696, 889, 1378
AlwI GGATC 3 cut(s) 99, 501, 1149
Ama87I CYCGRG 1 cut(s) 510
Aor13HI TCCGGA 1 cut(s) 330
AoxI GGCC 3 cut(s) 325, 718, 1249
ApeKI GCWGC 3 cut(s) 58, 211, 1313
Asp700I GAANNNNTTC 2 cut(s) 492, 703
AspLEI GCGC 1 cut(s) 1402
AspS9I GGNCC 3 cut(s) 251, 296, 580
AsuHPI GGTGA 3 cut(s) 112, 326, 839
AvaI CYCGRG 1 cut(s) 510
AvaII GGWCC 3 cut(s) 251, 296, 580
BaeGI GKGCMC 2 cut(s) 549, 1329
BanI GGYRCC 2 cut(s) 278, 1324
BanII GRGCYC 1 cut(s) 1172
Bbv12I GWGCWC 1 cut(s) 1351
BbvCI CCTCAGC 1 cut(s) 87
BbvI GCAGC 3 cut(s) 45, 223, 1300
BccI CCATC 4 cut(s) 393, 792, 880, 1061
BceAI ACGGC 1 cut(s) 334
BciT130I CCWGG 3 cut(s) 111, 255, 1253
BciVI GTATCC 1 cut(s) 71
BcoDI GTCTC 5 cut(s) 387, 643, 696, 889, 1378
BfaI CTAG 1 cut(s) 1193
BfmI CTRYAG 2 cut(s) 876, 1269
BfuI GTATCC 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 1257
BisI GCNGC 3 cut(s) 59, 212, 1314
BlsI GCNGC 3 cut(s) 60, 213, 1315
Bme1390I CCNGG 3 cut(s) 111, 255, 1253
Bme18I GGWCC 3 cut(s) 251, 296, 580
BmeT110I CYCGRG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 3 cut(s) 251, 296, 580
BmiI GGNNCC 3 cut(s) 280, 297, 1326
BmrFI CCNGG 3 cut(s) 111, 255, 1253
BmsI GCATC 3 cut(s) 368, 430, 652
BpmI CTGGAG 1 cut(s) 411
Bpu10I CCTNAGC 1 cut(s) 87
BpuEI CTTGAG 1 cut(s) 792
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 2 cut(s) 1025, 1299
BsaWI WCCGGW 2 cut(s) 330, 527
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 875, 905, 921, 951
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 125, 1166, 1305
Bse1I ACTGG 3 cut(s) 604, 721, 1185
BseAI TCCGGA 1 cut(s) 330
BseBI CCWGG 3 cut(s) 111, 255, 1253
BseDI CCNNGG 2 cut(s) 1025, 1299
BseGI GGATG 4 cut(s) 166, 404, 445, 1080
BseLI CCNNNNNNNGG 4 cut(s) 88, 125, 1166, 1305
BseMII CTCAG 2 cut(s) 78, 638
BseNI ACTGG 3 cut(s) 604, 721, 1185
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 2 cut(s) 549, 1329
BseXI GCAGC 3 cut(s) 45, 223, 1300
BseYI CCCAGC 5 cut(s) 61, 82, 143, 170, 292
BsgI GTGCAG 3 cut(s) 87, 1057, 1337
Bsh1236I CGCG 1 cut(s) 1402
BshFI GGCC 3 cut(s) 327, 720, 1251
BshNI GGYRCC 2 cut(s) 278, 1324
BsiHKAI GWGCWC 1 cut(s) 1351
BsiHKCI CYCGRG 1 cut(s) 510
BsiSI CCGG 3 cut(s) 331, 528, 668
BslFI GGGAC 1 cut(s) 1208
BslI CCNNNNNNNGG 4 cut(s) 88, 125, 1166, 1305
BsmAI GTCTC 5 cut(s) 387, 643, 696, 889, 1378
BsmFI GGGAC 1 cut(s) 1208
BsmI GAATGC 2 cut(s) 743, 1044
BsnI GGCC 3 cut(s) 327, 720, 1251
Bso31I GGTCTC 1 cut(s) 696
BsoBI CYCGRG 1 cut(s) 510
Bsp1286I GDGCHC 4 cut(s) 549, 1172, 1329, 1351
Bsp13I TCCGGA 1 cut(s) 330
Bsp143I GATC 4 cut(s) 91, 506, 655, 1141
Bsp19I CCATGG 1 cut(s) 1025
BspACI CCGC 4 cut(s) 273, 557, 901, 1260
BspANI GGCC 3 cut(s) 327, 720, 1251
BspCNI CTCAG 2 cut(s) 79, 639
BspEI TCCGGA 1 cut(s) 330
BspFNI CGCG 1 cut(s) 1402
BspHI TCATGA 1 cut(s) 729
BspLI GGNNCC 3 cut(s) 280, 297, 1326
BspPI GGATC 3 cut(s) 99, 501, 1149
BspT107I GGYRCC 2 cut(s) 278, 1324
BspTNI GGTCTC 1 cut(s) 696
BsrI ACTGG 3 cut(s) 604, 721, 1185
BssECI CCNNGG 2 cut(s) 1025, 1299
BssMI GATC 4 cut(s) 91, 506, 655, 1141
BssNAI GTATAC 1 cut(s) 1118
BssT1I CCWWGG 1 cut(s) 1025
Bst1107I GTATAC 1 cut(s) 1118
Bst2UI CCWGG 3 cut(s) 111, 255, 1253
Bst4CI ACNGT 3 cut(s) 1115, 1222, 1303
Bst6I CTCTTC 1 cut(s) 1364
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 87, 647, 915
BstDSI CCRYGG 2 cut(s) 1025, 1299
BstF5I GGATG 4 cut(s) 166, 404, 445, 1080
BstFNI CGCG 1 cut(s) 1402
BstHHI GCGC 1 cut(s) 1402
BstKTI GATC 4 cut(s) 94, 509, 658, 1144
BstMAI GTCTC 5 cut(s) 387, 643, 696, 889, 1378
BstMBI GATC 4 cut(s) 91, 506, 655, 1141
BstMWI GCNNNNNNNGC 5 cut(s) 115, 449, 789, 998, 1257
BstNI CCWGG 3 cut(s) 111, 255, 1253
BstSCI CCNGG 3 cut(s) 109, 253, 1251
BstSFI CTRYAG 2 cut(s) 876, 1269
BstSLI GKGCMC 2 cut(s) 549, 1329
BstUI CGCG 1 cut(s) 1402
BstV1I GCAGC 3 cut(s) 45, 223, 1300
BstX2I RGATCY 2 cut(s) 91, 506
BstXI CCANNNNNNTGG 1 cut(s) 348
BstYI RGATCY 2 cut(s) 91, 506
BstZ17I GTATAC 1 cut(s) 1118
BsuI GTATCC 1 cut(s) 71
BsuRI GGCC 3 cut(s) 327, 720, 1251
BtgI CCRYGG 2 cut(s) 1025, 1299
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 4 cut(s) 166, 404, 445, 1080
BtsI GCAGTG 3 cut(s) 75, 641, 1349
BtsIMutI CAGTG 6 cut(s) 75, 641, 1141, 1178, 1349, 1369
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 1 cut(s) 729
CfoI GCGC 1 cut(s) 1402
Cfr13I GGNCC 3 cut(s) 251, 296, 580
CseI GACGC 1 cut(s) 1391
Csp6I GTAC 4 cut(s) 832, 1008, 1157, 1276
CviAII CATG 5 cut(s) 348, 695, 730, 998, 1026
CviQI GTAC 4 cut(s) 832, 1008, 1157, 1276
DdeI CTNAG 3 cut(s) 87, 647, 915
DpnI GATC 4 cut(s) 93, 508, 657, 1143
DpnII GATC 4 cut(s) 91, 506, 655, 1141
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 1364
EarI CTCTTC 1 cut(s) 1364
EciI GGCGGA 1 cut(s) 288
Eco130I CCWWGG 1 cut(s) 1025
Eco147I AGGCCT 1 cut(s) 327
Eco24I GRGCYC 1 cut(s) 1172
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 3 cut(s) 251, 296, 580
Eco57I CTGAAG 1 cut(s) 1345
Eco88I CYCGRG 1 cut(s) 510
EcoRII CCWGG 3 cut(s) 109, 253, 1251
EcoT14I CCWWGG 1 cut(s) 1025
EcoT38I GRGCYC 1 cut(s) 1172
ErhI CCWWGG 1 cut(s) 1025
FaeI CATG 5 cut(s) 351, 698, 733, 1001, 1029
FaqI GGGAC 1 cut(s) 1208
FatI CATG 5 cut(s) 347, 694, 729, 997, 1025
FauNDI CATATG 2 cut(s) 676, 1320
FblI GTMKAC 1 cut(s) 1117
Fnu4HI GCNGC 3 cut(s) 59, 212, 1314
FokI GGATG 4 cut(s) 173, 411, 452, 1067
FriOI GRGCYC 1 cut(s) 1172
Fsp4HI GCNGC 3 cut(s) 59, 212, 1314
FspBI CTAG 1 cut(s) 1193
GlaI GCGC 1 cut(s) 1401
GluI GCNGC 3 cut(s) 59, 212, 1314
GsaI CCCAGC 5 cut(s) 65, 86, 147, 174, 296
GsuI CTGGAG 1 cut(s) 411
HaeIII GGCC 3 cut(s) 327, 720, 1251
HapII CCGG 3 cut(s) 331, 528, 668
HgaI GACGC 1 cut(s) 1391
HhaI GCGC 1 cut(s) 1402
Hin1II CATG 5 cut(s) 351, 698, 733, 1001, 1029
Hin6I GCGC 1 cut(s) 1400
HinP1I GCGC 1 cut(s) 1400
HincII GTYRAC 1 cut(s) 1290
HindII GTYRAC 1 cut(s) 1290
HinfI GANTC 5 cut(s) 380, 431, 637, 853, 1148
HpaII CCGG 3 cut(s) 331, 528, 668
HphI GGTGA 3 cut(s) 112, 326, 839
Hpy166II GTNNAC 3 cut(s) 1118, 1190, 1290
Hpy188I TCNGA 7 cut(s) 424, 506, 709, 819, 987, 1176, 1383
Hpy8I GTNNAC 3 cut(s) 1118, 1190, 1290
Hpy99I CGWCG 1 cut(s) 851
HpyAV CCTTC 5 cut(s) 983, 1004, 1094, 1350, 1416
HpyCH4III ACNGT 3 cut(s) 1115, 1222, 1303
HpyCH4IV ACGT 4 cut(s) 849, 947, 958, 1292
HpyCH4V TGCA 9 cut(s) 68, 452, 463, 542, 792, 1001, 1038, 1354, 1367
HpyF10VI GCNNNNNNNGC 5 cut(s) 115, 449, 789, 998, 1257
HpyF3I CTNAG 3 cut(s) 87, 647, 915
HpySE526I ACGT 4 cut(s) 849, 947, 958, 1292
Hsp92II CATG 5 cut(s) 351, 698, 733, 1001, 1029
HspAI GCGC 1 cut(s) 1400
Kpn2I TCCGGA 1 cut(s) 330
Kzo9I GATC 4 cut(s) 91, 506, 655, 1141
LmnI GCTCC 4 cut(s) 177, 670, 883, 1232
Lsp1109I GCAGC 3 cut(s) 45, 223, 1300
LweI GCATC 3 cut(s) 368, 430, 652
MaeI CTAG 1 cut(s) 1193
MaeII ACGT 4 cut(s) 849, 947, 958, 1292
MaeIII GTNAC 1 cut(s) 314
MalI GATC 4 cut(s) 93, 508, 657, 1143
MboI GATC 4 cut(s) 91, 506, 655, 1141
MboII GAAGA 1 cut(s) 1351
MflI RGATCY 2 cut(s) 91, 506
MhlI GDGCHC 4 cut(s) 549, 1172, 1329, 1351
MluCI AATT 3 cut(s) 560, 841, 1051
MlyI GAGTC 2 cut(s) 389, 425
MmeI TCCRAC 5 cut(s) 18, 332, 521, 907, 1361
MroI TCCGGA 1 cut(s) 330
MroXI GAANNNNTTC 2 cut(s) 492, 703
MseI TTAA 2 cut(s) 1050, 1077
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 3 cut(s) 331, 528, 668
MspR9I CCNGG 3 cut(s) 111, 255, 1253
Mva1269I GAATGC 2 cut(s) 743, 1044
MvaI CCWGG 3 cut(s) 111, 255, 1253
MvnI CGCG 1 cut(s) 1402
MwoI GCNNNNNNNGC 5 cut(s) 115, 449, 789, 998, 1257
NcoI CCATGG 1 cut(s) 1025
NdeI CATATG 2 cut(s) 676, 1320
NdeII GATC 4 cut(s) 91, 506, 655, 1141
NlaIII CATG 5 cut(s) 351, 698, 733, 1001, 1029
NlaIV GGNNCC 3 cut(s) 280, 297, 1326
NmuCI GTSAC 1 cut(s) 314
PagI TCATGA 1 cut(s) 729
PceI AGGCCT 1 cut(s) 327
PctI GAATGC 2 cut(s) 743, 1044
PdmI GAANNNNTTC 2 cut(s) 492, 703
PfeI GAWTC 3 cut(s) 637, 853, 1148
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 3 cut(s) 60, 213, 1315
PleI GAGTC 2 cut(s) 388, 425
PpsI GAGTC 2 cut(s) 388, 425
Psp6I CCWGG 3 cut(s) 109, 253, 1251
PspFI CCCAGC 5 cut(s) 61, 82, 143, 170, 292
PspGI CCWGG 3 cut(s) 109, 253, 1251
PspN4I GGNNCC 3 cut(s) 280, 297, 1326
PspPI GGNCC 3 cut(s) 251, 296, 580
PsuI RGATCY 2 cut(s) 91, 506
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 4 cut(s) 833, 1009, 1158, 1277
RsaNI GTAC 4 cut(s) 832, 1008, 1157, 1276
SaqAI TTAA 2 cut(s) 1050, 1077
SatI GCNGC 3 cut(s) 59, 212, 1314
Sau3AI GATC 4 cut(s) 91, 506, 655, 1141
Sau96I GGNCC 3 cut(s) 251, 296, 580
SchI GAGTC 2 cut(s) 389, 425
ScrFI CCNGG 3 cut(s) 111, 255, 1253
SduI GDGCHC 4 cut(s) 549, 1172, 1329, 1351
SfaNI GCATC 3 cut(s) 368, 430, 652
SfcI CTRYAG 2 cut(s) 876, 1269
SinI GGWCC 3 cut(s) 251, 296, 580
SmlI CTYRAG 1 cut(s) 807
SmoI CTYRAG 1 cut(s) 807
Sse9I AATT 3 cut(s) 560, 841, 1051
SseBI AGGCCT 1 cut(s) 327
SsiI CCGC 4 cut(s) 273, 557, 901, 1260
SspI AATATT 1 cut(s) 683
SspMI CTAG 1 cut(s) 1193
StuI AGGCCT 1 cut(s) 327
StyD4I CCNGG 3 cut(s) 109, 253, 1251
StyI CCWWGG 1 cut(s) 1025
TaaI ACNGT 3 cut(s) 1115, 1222, 1303
TaiI ACGT 4 cut(s) 852, 950, 961, 1295
TaqI TCGA 1 cut(s) 410
TasI AATT 3 cut(s) 560, 841, 1051
TatI WGTACW 1 cut(s) 831
TfiI GAWTC 3 cut(s) 637, 853, 1148
Tru1I TTAA 2 cut(s) 1050, 1077
Tru9I TTAA 2 cut(s) 1050, 1077
TscAI CASTG 6 cut(s) 75, 648, 1141, 1185, 1356, 1369
TseFI GTSAC 1 cut(s) 314
TseI GCWGC 3 cut(s) 58, 211, 1313
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 6 cut(s) 491, 501, 693, 726, 746, 986
TspGWI ACGGA 4 cut(s) 256, 1141, 1245, 1293
TspRI CASTG 6 cut(s) 75, 648, 1141, 1185, 1356, 1369
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 3 cut(s) 251, 296, 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 1233
XmiI GTMKAC 1 cut(s) 1117
XmnI GAANNNNTTC 2 cut(s) 492, 703
XspI CTAG 1 cut(s) 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.