Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Forward (+)

37690543 .. 37705525

Gene Structure 14983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGGTTGTTTTGGTTTAGTGTAGCTTTGATTGGATTGGTGATTGTTGGGGTTGAGGGGTATCCAGCTGAGGATCTGGTGGTGAAGTTGCCTGGTCAGCCACAAGTGGGGTTTAAGCAGTATGCTGGGTATGTTGATGTGGATGTGAAAAATGGGAGGAGTTTGTTTTACTATTTTGTTGAAGCAGATAAGCAGCCTGATCAGAAGCCCCTATCTCTGTGGCTCAATGGAGGTCCAGGCTGTTCCTCTATTGGTGGAGGTGCCTTCATGGAGTTGGGTCCGTTTTACCCTACAGGTGATGGTCGAGGCCTCCGAAGAAACCCAATGTCCTGGAATAGAGCATCAAATCTCCTCTTTGTTGAGTCTCCTGCTGGAGTTGGATGGTCATACTCAAATACAAGTTCCGATTATAATTCTGGGGATGCCTCCACTGCAAGGGATATGCACACATTCTTGTTGAAATGGTATGAGAAGTTTCCAGCTTACAAATCTAGAGAGTTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCTCAATTGGCTGTTACTATATTGGACCATAATAAACATTCAACTGGTTTCATGTTCAATCTCAAAGGGGTTGCTATTGGGAATCCACTTTTGAAACTTGATCGTGACACAGCGTCAACATATGAATATTTTTGGTCACATGGAATGATTTCTGATGAAATTGGCCTTACAATCATGAACGATTGTGATTTTGAGGATTATGAATTTGCAACGCCTCACAGTGTAAGCATTGCATGCAATAATGCAATAGCTACAGCCAATAGCATAGTTGGCAAGTATATAGACAATTACGATGTGATCCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAATTGAGACTGCGGAAAGTGGTTACTAAGATAAGTGTTGGAGTTGATGTGTGTCTGACATTTGAATGCCAGTTTTATTTGAACCTTCCTGAGGTTCAGAAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATAGCTGGAGAATGTGCAGCAGCGGTGTTCTTAATTACAGTGATACTGATTTTAACCTAAACATGCTTCCCTTGCTGGCGAGGATAGTTGAAAATCGTATACCAGTTTGGGTTTTCAGTGGAGACCAAGATTCTGTTGTTCCACTATTGGGCTCCCGAACACTCATCCGTGAATTAGCAAATGATCTAAAGTTCCAGATAACAGTGCCATATGGAGCTTGGTTTCACAAAGGCCAGGTAGGAGGTTGGGCAACGGAGTATGGAAATCTATTGACCTTTGCCACAGTAAGAGGTGCTGCTCATATGGTACCCTATGCTCAACCATCAAGATCTTTGCACCTGTTCAGTTCATTTGTTCATAATAGGAGATTGCCCAACACGACACGTCCTCCCATTATGAATAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

470

Amino Acids

52.58

Weight (kDa)

6.27

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	31 - 455	7.3e-137	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	1309
AccB1I	GGYRCC	2 cut(s)	260, 1309
AccI	GTMKAC	1 cut(s)	1102
AciI	CCGC	2 cut(s)	883, 1026
AclWI	GGATC	2 cut(s)	81, 829
AcsI	RAATTY	1 cut(s)	740
AfaI	GTAC	2 cut(s)	991, 1311
AfiI	CCNNNNNNNGG	4 cut(s)	107, 435, 961, 1151
AflIII	ACRYGT	1 cut(s)	1385
AgsI	TTSAA	8 cut(s)	182, 460, 579, 595, 631, 935, 952, 1094
AhdI	GACNNNNNGTC	1 cut(s)	649
AjiI	CACGTC	1 cut(s)	1388
AjnI	CCWGG	4 cut(s)	91, 235, 329, 1236
AluBI	AGCT	7 cut(s)	26, 68, 482, 519, 788, 1008, 1220
AluI	AGCT	7 cut(s)	26, 68, 482, 519, 788, 1008, 1220
Alw26I	GTCTC	3 cut(s)	369, 871, 1119
AlwI	GGATC	2 cut(s)	81, 829
AoxI	GGCC	3 cut(s)	307, 700, 1234
ApeKI	GCWGC	4 cut(s)	193, 1020, 1023, 1298
ApoI	RAATTY	1 cut(s)	740
Asp700I	GAANNNNTTC	1 cut(s)	685
Asp718I	GGTACC	1 cut(s)	1309
AspS9I	GGNCC	3 cut(s)	233, 278, 562
AsuHPI	GGTGA	3 cut(s)	52, 94, 308
AvaII	GGWCC	3 cut(s)	233, 278, 562
AxyI	CCTNAGG	1 cut(s)	960
BaeGI	GKGCMC	1 cut(s)	531
BanI	GGYRCC	2 cut(s)	260, 1309
BanII	GRGCYC	1 cut(s)	1157
BbvCI	CCTCAGC	1 cut(s)	69
BbvI	GCAGC	4 cut(s)	205, 1032, 1035, 1285
BccI	CCATC	4 cut(s)	293, 375, 862, 1333
BciT130I	CCWGG	4 cut(s)	93, 237, 331, 1238
BciVI	GTATCC	1 cut(s)	72
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	369, 871, 1119
BfaI	CTAG	1 cut(s)	492
BfmI	CTRYAG	3 cut(s)	291, 789, 858
BfuI	GTATCC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	1331
BisI	GCNGC	4 cut(s)	194, 1021, 1024, 1299
BlsI	GCNGC	4 cut(s)	195, 1022, 1025, 1300
Bme1390I	CCNGG	4 cut(s)	93, 237, 331, 1238
Bme18I	GGWCC	3 cut(s)	233, 278, 562
BmeRI	GACNNNNNGTC	1 cut(s)	649
BmgBI	CACGTC	1 cut(s)	1388
BmgT120I	GGNCC	3 cut(s)	233, 278, 562
BmiI	GGNNCC	4 cut(s)	262, 279, 1156, 1311
BmrFI	CCNGG	4 cut(s)	93, 237, 331, 1238
BmsI	GCATC	2 cut(s)	350, 412
BpmI	CTGGAG	2 cut(s)	393, 1030
Bpu10I	CCTNAGC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	1119
BsaWI	WCCGGW	1 cut(s)	509
BsaXI	ACNNNNNCTCC	4 cut(s)	903, 933, 1375, 1405
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 435, 961, 1151
Bse1I	ACTGG	3 cut(s)	586, 940, 1106
Bse21I	CCTNAGG	1 cut(s)	960
Bse3DI	GCAATG	1 cut(s)	765
BseBI	CCWGG	4 cut(s)	93, 237, 331, 1238
BseGI	GGATG	4 cut(s)	148, 386, 427, 1167
BseLI	CCNNNNNNNGG	4 cut(s)	107, 435, 961, 1151
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	60, 951
BseNI	ACTGG	3 cut(s)	586, 940, 1106
BseRI	GAGGAG	2 cut(s)	172, 341
BseSI	GKGCMC	1 cut(s)	531
BseXI	GCAGC	4 cut(s)	205, 1032, 1035, 1285
BseYI	CCCAGC	1 cut(s)	125
BsgI	GTGCAG	1 cut(s)	1039
BshFI	GGCC	3 cut(s)	309, 702, 1236
BshNI	GGYRCC	2 cut(s)	260, 1309
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	4 cut(s)	107, 435, 961, 1151
BsmAI	GTCTC	3 cut(s)	369, 871, 1119
BsmI	GAATGC	1 cut(s)	941
BsnI	GGCC	3 cut(s)	309, 702, 1236
Bso31I	GGTCTC	1 cut(s)	1119
Bsp1286I	GDGCHC	2 cut(s)	531, 1157
Bsp143I	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
BspACI	CCGC	2 cut(s)	883, 1026
BspANI	GGCC	3 cut(s)	309, 702, 1236
BspCNI	CTCAG	2 cut(s)	61, 952
BspHI	TCATGA	1 cut(s)	711
BspLI	GGNNCC	4 cut(s)	262, 279, 1156, 1311
BspPI	GGATC	2 cut(s)	81, 829
BspT107I	GGYRCC	2 cut(s)	260, 1309
BspTNI	GGTCTC	1 cut(s)	1119
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	3 cut(s)	586, 940, 1106
BssMI	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
BssNAI	GTATAC	1 cut(s)	1103
Bst1107I	GTATAC	1 cut(s)	1103
Bst2UI	CCWGG	4 cut(s)	93, 237, 331, 1238
Bst4CI	ACNGT	4 cut(s)	758, 1043, 1207, 1288
BstAPI	GCANNNNNTGC	1 cut(s)	771
BstC8I	GCNNGC	2 cut(s)	772, 1080
BstDEI	CTNAG	3 cut(s)	69, 897, 960
BstENI	CCTNNNNNAGG	1 cut(s)	959
BstF5I	GGATG	4 cut(s)	148, 386, 427, 1167
BstKTI	GATC	6 cut(s)	76, 202, 640, 837, 1189, 1334
BstMAI	GTCTC	3 cut(s)	369, 871, 1119
BstMBI	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1075
BstNI	CCWGG	4 cut(s)	93, 237, 331, 1238
BstNSI	RCATGY	2 cut(s)	774, 1069
BstSCI	CCNGG	4 cut(s)	91, 235, 329, 1236
BstSFI	CTRYAG	3 cut(s)	291, 789, 858
BstSLI	GKGCMC	1 cut(s)	531
BstV1I	GCAGC	4 cut(s)	205, 1032, 1035, 1285
BstX2I	RGATCY	2 cut(s)	73, 1331
BstXI	CCANNNNNNTGG	1 cut(s)	330
BstYI	RGATCY	2 cut(s)	73, 1331
BstZ17I	GTATAC	1 cut(s)	1103
Bsu36I	CCTNAGG	1 cut(s)	960
BsuI	GTATCC	1 cut(s)	72
BsuRI	GGCC	3 cut(s)	309, 702, 1236
BtrI	CACGTC	1 cut(s)	1388
BtsCI	GGATG	4 cut(s)	148, 386, 427, 1167
BtsI	GCAGTG	1 cut(s)	429
BtsIMutI	CAGTG	5 cut(s)	429, 763, 1048, 1126, 1212
Cac8I	GCNNGC	2 cut(s)	772, 1080
CciI	TCATGA	1 cut(s)	711
Cfr13I	GGNCC	3 cut(s)	233, 278, 562
CseI	GACGC	1 cut(s)	639
Csp6I	GTAC	2 cut(s)	990, 1310
CviAII	CATG	7 cut(s)	268, 589, 677, 712, 771, 980, 1066
CviQI	GTAC	2 cut(s)	990, 1310
DdeI	CTNAG	3 cut(s)	69, 897, 960
DpnI	GATC	6 cut(s)	75, 201, 639, 836, 1188, 1333
DpnII	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
DriI	GACNNNNNGTC	1 cut(s)	649
Eam1105I	GACNNNNNGTC	1 cut(s)	649
Eco147I	AGGCCT	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	1157
Eco31I	GGTCTC	1 cut(s)	1119
Eco47I	GGWCC	3 cut(s)	233, 278, 562
Eco81I	CCTNAGG	1 cut(s)	960
EcoNI	CCTNNNNNAGG	1 cut(s)	959
EcoRII	CCWGG	4 cut(s)	91, 235, 329, 1236
EcoT38I	GRGCYC	1 cut(s)	1157
FaeI	CATG	7 cut(s)	271, 592, 680, 715, 774, 983, 1069
FatI	CATG	7 cut(s)	267, 588, 676, 711, 770, 979, 1065
FauNDI	CATATG	3 cut(s)	658, 1213, 1305
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	1102
Fnu4HI	GCNGC	4 cut(s)	194, 1021, 1024, 1299
FokI	GGATG	4 cut(s)	155, 393, 434, 1154
FriOI	GRGCYC	1 cut(s)	1157
Fsp4HI	GCNGC	4 cut(s)	194, 1021, 1024, 1299
FspBI	CTAG	1 cut(s)	492
GluI	GCNGC	4 cut(s)	194, 1021, 1024, 1299
GsaI	CCCAGC	1 cut(s)	129
GsuI	CTGGAG	2 cut(s)	393, 1030
HaeIII	GGCC	3 cut(s)	309, 702, 1236
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	1 cut(s)	639
Hin1II	CATG	7 cut(s)	271, 592, 680, 715, 774, 983, 1069
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HinfI	GANTC	3 cut(s)	362, 619, 1133
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	3 cut(s)	52, 94, 308
Hpy166II	GTNNAC	2 cut(s)	654, 1103
Hpy188I	TCNGA	6 cut(s)	204, 314, 406, 691, 927, 969
Hpy188III	TCNNGA	7 cut(s)	492, 641, 712, 959, 1158, 1198, 1329
Hpy8I	GTNNAC	2 cut(s)	654, 1103
HpyAV	CCTTC	3 cut(s)	274, 965, 986
HpyCH4III	ACNGT	4 cut(s)	758, 1043, 1207, 1288
HpyCH4IV	ACGT	1 cut(s)	1387
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1075
HpyF3I	CTNAG	3 cut(s)	69, 897, 960
HpySE526I	ACGT	1 cut(s)	1387
Hsp92II	CATG	7 cut(s)	271, 592, 680, 715, 774, 983, 1069
KpnI	GGTACC	1 cut(s)	1313
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
LmnI	GCTCC	3 cut(s)	865, 1160, 1217
Lsp1109I	GCAGC	4 cut(s)	205, 1032, 1035, 1285
LweI	GCATC	2 cut(s)	350, 412
MaeI	CTAG	1 cut(s)	492
MaeII	ACGT	1 cut(s)	1387
MaeIII	GTNAC	4 cut(s)	550, 641, 672, 892
MalI	GATC	6 cut(s)	75, 201, 639, 836, 1188, 1333
MboI	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
MboII	GAAGA	1 cut(s)	327
MfeI	CAATTG	1 cut(s)	542
MflI	RGATCY	2 cut(s)	73, 1331
MhlI	GDGCHC	2 cut(s)	531, 1157
MluCI	AATT	8 cut(s)	412, 542, 696, 740, 823, 872, 1036, 1175
MlyI	GAGTC	1 cut(s)	371
MmeI	TCCRAC	2 cut(s)	358, 889
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	3 cut(s)	114, 1035, 1056
MslI	CAYNNNNRTG	1 cut(s)	934
MspA1I	CMGCKG	2 cut(s)	68, 1026
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	4 cut(s)	93, 237, 331, 1238
MunI	CAATTG	1 cut(s)	542
Mva1269I	GAATGC	1 cut(s)	941
MvaI	CCWGG	4 cut(s)	93, 237, 331, 1238
MwoI	GCNNNNNNNGC	6 cut(s)	97, 431, 771, 807, 980, 1075
NdeI	CATATG	3 cut(s)	658, 1213, 1305
NdeII	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
NlaIII	CATG	7 cut(s)	271, 592, 680, 715, 774, 983, 1069
NlaIV	GGNNCC	4 cut(s)	262, 279, 1156, 1311
NmuCI	GTSAC	2 cut(s)	641, 672
NspI	RCATGY	2 cut(s)	774, 1069
PaeI	GCATGC	1 cut(s)	774
PagI	TCATGA	1 cut(s)	711
PceI	AGGCCT	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	310
PctI	GAATGC	1 cut(s)	941
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	2 cut(s)	619, 1133
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	195, 1022, 1025, 1300
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
PsiI	TTATAA	1 cut(s)	411
Psp6I	CCWGG	4 cut(s)	91, 235, 329, 1236
PspFI	CCCAGC	1 cut(s)	125
PspGI	CCWGG	4 cut(s)	91, 235, 329, 1236
PspN4I	GGNNCC	4 cut(s)	262, 279, 1156, 1311
PspPI	GGNCC	3 cut(s)	233, 278, 562
PsuI	RGATCY	2 cut(s)	73, 1331
PvuII	CAGCTG	1 cut(s)	68
RsaI	GTAC	2 cut(s)	991, 1311
RsaNI	GTAC	2 cut(s)	990, 1310
RseI	CAYNNNNRTG	1 cut(s)	934
SaqAI	TTAA	3 cut(s)	114, 1035, 1056
SatI	GCNGC	4 cut(s)	194, 1021, 1024, 1299
Sau3AI	GATC	6 cut(s)	73, 199, 637, 834, 1186, 1331
Sau96I	GGNCC	3 cut(s)	233, 278, 562
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	4 cut(s)	93, 237, 331, 1238
SduI	GDGCHC	2 cut(s)	531, 1157
SfaNI	GCATC	2 cut(s)	350, 412
SfcI	CTRYAG	3 cut(s)	291, 789, 858
SinI	GGWCC	3 cut(s)	233, 278, 562
SmiMI	CAYNNNNRTG	1 cut(s)	934
SphI	GCATGC	1 cut(s)	774
Sse9I	AATT	8 cut(s)	412, 542, 696, 740, 823, 872, 1036, 1175
SseBI	AGGCCT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	883, 1026
SspI	AATATT	1 cut(s)	665
SspMI	CTAG	1 cut(s)	492
StuI	AGGCCT	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	91, 235, 329, 1236
TaaI	ACNGT	4 cut(s)	758, 1043, 1207, 1288
TaiI	ACGT	1 cut(s)	1390
TaqI	TCGA	1 cut(s)	304
TasI	AATT	8 cut(s)	412, 542, 696, 740, 823, 872, 1036, 1175
TfiI	GAWTC	2 cut(s)	619, 1133
Tru1I	TTAA	3 cut(s)	114, 1035, 1056
Tru9I	TTAA	3 cut(s)	114, 1035, 1056
TscAI	CASTG	5 cut(s)	436, 763, 1048, 1126, 1212
TseFI	GTSAC	2 cut(s)	641, 672
TseI	GCWGC	4 cut(s)	193, 1020, 1023, 1298
Tsp45I	GTSAC	2 cut(s)	641, 672
TspDTI	ATGAA	9 cut(s)	256, 577, 675, 708, 728, 753, 968, 1341, 1349
TspGWI	ACGGA	3 cut(s)	270, 1160, 1271
TspRI	CASTG	5 cut(s)	436, 763, 1048, 1126, 1212
VpaK11BI	GGWCC	3 cut(s)	233, 278, 562
XagI	CCTNNNNNAGG	1 cut(s)	959
XapI	RAATTY	1 cut(s)	740
XbaI	TCTAGA	1 cut(s)	491
XceI	RCATGY	2 cut(s)	774, 1069
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1218
XmiI	GTMKAC	1 cut(s)	1102
XmnI	GAANNNNTTC	1 cut(s)	685
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.