Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1022309 .. 1026025

Gene Structure 3717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00840.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGATTAGTTTTGAGATGGGTAGGTGTTGGTTTAGTGGGGTTTTGATTTTGTTGGGGTGTGTGTGGTTGGTGCTGCTGGGTGCCGTGGAGGGATACCCAGCAGAGGATCTGGTAGTGAGTCTGCCTGGTCAGCCAAGTGTTGGGTTCAAACAGTATGCTGGGTATGTTGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGTTGAAGCAGATAAGCAGCCTGACAAGAAGTCCCTCACTCTTTGGCTCAATGGAGGTCCGGGGTGTTCTTCCATTGGCGGAGGTGCCTTTACGGAGTTGGGTCCATTTTATCCAACAGGTGATGGAAGAGGTGTCCGGAGAAATAAAATGTCATGGAACAGAGCAAGGGATATGCACACATTCTTGCTCAAATGGTATGAGAAGTTTCCAACTTTCAGATCCCGAGAGCTGTTTCTTACCGGAGAAAGCTATGCAGGGCACTACATACCGCAATTGGCTATTGCCATATTAGACCATAATAAACAATCAACTGGTTTCAAGTTCAATCTCAAAGGGGTTGCTATTGGGAATCCACTGCTGAGACTTGATCGTGATCCTGCAGCAACATATGAATACTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGCCTTACTATCATGAACGAATGCGATTTTGACGATTATGTCTTTGCAAATCCGCACAATGTAAGCCTTGAATGCAACAAAGCAATATCTAAAGCAAATCAGATAGTTGGTGATTACATAAACAATTATGATGTGATCCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAGTTGAGACTGTGGAAAATGGCTACTAAGATAAGCATTGGAGTTGATGTATGTATGACATATGAAAGAAGTTTTTATTTGAACCTCCCTGAAGTTCAGAAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATACTTGGAGTATGTGCAGTGGCGTTCTTAATTACAGCGATACTGATGAAAACATCAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAATCATATTCCCGTTTGGGTTTTCAGTGGGGATCAAGATTCTGTTGTACCATTCCTTGGCTCCCGGACACTGATACGTGAACTAGCACATGACCTAAAGTTCCCGATAACTGTCCCATACGGAGCTTGGTTTCACAAAGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATCTGTTGACGTTTGCCACAGTAAGGGGCGCTGCTCATATGGTCCCCTATGCTCAACCTTCAAGAGCATTGCACCTCTTCAGTTCATTTGTTCTTGGTCAAAGACTGCCCAACACAACGCATCCTCCCATTGACGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

448

Amino Acids

50.29

Weight (kDa)

6.07

Isoelectric Point (pI)

47.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	677
AccB1I	GGYRCC	2 cut(s)	80, 293
AccB7I	CCANNNNNTGG	2 cut(s)	140, 1088
AccIII	TCCGGA	1 cut(s)	345
AciI	CCGC	4 cut(s)	288, 479, 692, 1182
AclWI	GGATC	5 cut(s)	114, 423, 578, 769, 1071
AcuI	CTGAAG	2 cut(s)	921, 1267
AfaI	GTAC	3 cut(s)	931, 1080, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	103, 140, 1088, 1227
AgsI	TTSAA	8 cut(s)	148, 215, 529, 535, 710, 892, 1031, 1266
AhdI	GACNNNNNGTC	1 cut(s)	238
AjnI	CCWGG	2 cut(s)	124, 1173
AluBI	AGCT	4 cut(s)	185, 439, 459, 1157
AluI	AGCT	4 cut(s)	185, 439, 459, 1157
Alw26I	GTCTC	3 cut(s)	565, 618, 811
AlwI	GGATC	5 cut(s)	114, 423, 578, 769, 1071
Ama87I	CYCGRG	1 cut(s)	432
Aor13HI	TCCGGA	1 cut(s)	345
AoxI	GGCC	2 cut(s)	640, 1171
ApeKI	GCWGC	4 cut(s)	73, 226, 590, 1235
Asp700I	GAANNNNTTC	1 cut(s)	625
AspLEI	GCGC	1 cut(s)	1235
AspS9I	GGNCC	3 cut(s)	266, 311, 1246
AsuC2I	CCSGG	2 cut(s)	270, 1096
AsuHPI	GGTGA	2 cut(s)	341, 761
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	3 cut(s)	266, 311, 1246
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	2 cut(s)	80, 293
BbvI	GCAGC	4 cut(s)	60, 238, 602, 1222
BccI	CCATC	3 cut(s)	10, 326, 802
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	126, 1175
BciVI	GTATCC	1 cut(s)	86
BcnI	CCSGG	2 cut(s)	270, 1096
BcoDI	GTCTC	3 cut(s)	565, 618, 811
BfaI	CTAG	1 cut(s)	1115
BfmI	CTRYAG	3 cut(s)	588, 798, 1191
BfoI	RGCGCY	1 cut(s)	1236
BfuI	GTATCC	1 cut(s)	86
BglI	GCCNNNNNGGC	1 cut(s)	1179
BisI	GCNGC	4 cut(s)	74, 227, 591, 1236
BlsI	GCNGC	4 cut(s)	75, 228, 592, 1237
Bme1390I	CCNGG	4 cut(s)	126, 270, 1096, 1175
Bme18I	GGWCC	3 cut(s)	266, 311, 1246
BmeRI	GACNNNNNGTC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	3 cut(s)	266, 311, 1246
BmiI	GGNNCC	5 cut(s)	82, 295, 312, 1093, 1248
BmrFI	CCNGG	4 cut(s)	126, 270, 1096, 1175
BmsI	GCATC	1 cut(s)	1333
BpuMI	CCSGG	2 cut(s)	270, 1096
BsaAI	YACGTR	1 cut(s)	1109
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	1 cut(s)	618
BsaJI	CCNNGG	3 cut(s)	84, 269, 1087
BsaWI	WCCGGW	2 cut(s)	345, 449
BsaXI	ACNNNNNCTCC	6 cut(s)	797, 827, 843, 873, 1312, 1342
Bsc4I	CCNNNNNNNGG	4 cut(s)	103, 140, 1088, 1227
Bse1I	ACTGG	1 cut(s)	526
Bse3DI	GCAATG	1 cut(s)	1271
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	126, 1175
BseDI	CCNNGG	3 cut(s)	84, 269, 1087
BseGI	GGATG	3 cut(s)	181, 1002, 1324
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	4 cut(s)	103, 140, 1088, 1227
BseMI	GCAATG	1 cut(s)	1271
BseMII	CTCAG	1 cut(s)	560
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	4 cut(s)	60, 238, 602, 1222
BseYI	CCCAGC	4 cut(s)	76, 97, 158, 185
BsgI	GTGCAG	1 cut(s)	979
BshFI	GGCC	2 cut(s)	642, 1173
BshNI	GGYRCC	2 cut(s)	80, 293
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	4 cut(s)	269, 346, 450, 1096
BslFI	GGGAC	3 cut(s)	226, 1130, 1232
BslI	CCNNNNNNNGG	4 cut(s)	103, 140, 1088, 1227
BsmAI	GTCTC	3 cut(s)	565, 618, 811
BsmFI	GGGAC	3 cut(s)	226, 1130, 1232
BsmI	GAATGC	2 cut(s)	665, 716
BsnI	GGCC	2 cut(s)	642, 1173
Bso31I	GGTCTC	1 cut(s)	618
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp13I	TCCGGA	1 cut(s)	345
Bsp143I	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
BspACI	CCGC	4 cut(s)	288, 479, 692, 1182
BspANI	GGCC	2 cut(s)	642, 1173
BspCNI	CTCAG	1 cut(s)	561
BspEI	TCCGGA	1 cut(s)	345
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	5 cut(s)	82, 295, 312, 1093, 1248
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	5 cut(s)	114, 423, 578, 769, 1071
BspT107I	GGYRCC	2 cut(s)	80, 293
BspTNI	GGTCTC	1 cut(s)	618
BsrDI	GCAATG	1 cut(s)	1271
BsrI	ACTGG	1 cut(s)	526
BssECI	CCNNGG	3 cut(s)	84, 269, 1087
BssMI	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
BssT1I	CCWWGG	1 cut(s)	1087
Bst2UI	CCWGG	2 cut(s)	126, 1175
Bst4CI	ACNGT	4 cut(s)	153, 822, 1144, 1225
Bst6I	CTCTTC	2 cut(s)	331, 1286
BstBAI	YACGTR	1 cut(s)	1109
BstDEI	CTNAG	2 cut(s)	569, 837
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	3 cut(s)	181, 1002, 1324
BstH2I	RGCGCY	1 cut(s)	1236
BstHHI	GCGC	1 cut(s)	1235
BstKTI	GATC	6 cut(s)	109, 431, 580, 586, 777, 1066
BstMAI	GTCTC	3 cut(s)	565, 618, 811
BstMBI	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
BstMWI	GCNNNNNNNGC	4 cut(s)	130, 711, 920, 1179
BstNI	CCWGG	2 cut(s)	126, 1175
BstSCI	CCNGG	4 cut(s)	124, 268, 1094, 1173
BstSFI	CTRYAG	3 cut(s)	588, 798, 1191
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	4 cut(s)	60, 238, 602, 1222
BstX2I	RGATCY	2 cut(s)	106, 428
BstYI	RGATCY	2 cut(s)	106, 428
BsuI	GTATCC	1 cut(s)	86
BsuRI	GGCC	2 cut(s)	642, 1173
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	3 cut(s)	181, 1002, 1324
BtsI	GCAGTG	2 cut(s)	563, 967
BtsIMutI	CAGTG	4 cut(s)	563, 967, 1063, 1100
CciI	TCATGA	1 cut(s)	651
CfoI	GCGC	1 cut(s)	1235
Cfr13I	GGNCC	3 cut(s)	266, 311, 1246
Csp6I	GTAC	3 cut(s)	930, 1079, 1198
CviAII	CATG	5 cut(s)	363, 617, 652, 920, 1121
CviQI	GTAC	3 cut(s)	930, 1079, 1198
DdeI	CTNAG	2 cut(s)	569, 837
DpnI	GATC	6 cut(s)	108, 430, 579, 585, 776, 1065
DpnII	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
DrdI	GACNNNNNNGTC	1 cut(s)	677
DriI	GACNNNNNGTC	1 cut(s)	238
DseDI	GACNNNNNNGTC	1 cut(s)	677
Eam1104I	CTCTTC	2 cut(s)	331, 1286
Eam1105I	GACNNNNNGTC	1 cut(s)	238
EarI	CTCTTC	2 cut(s)	331, 1286
EciI	GGCGGA	1 cut(s)	303
Eco130I	CCWWGG	1 cut(s)	1087
Eco31I	GGTCTC	1 cut(s)	618
Eco47I	GGWCC	3 cut(s)	266, 311, 1246
Eco57I	CTGAAG	2 cut(s)	921, 1267
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	2 cut(s)	124, 1173
EcoT14I	CCWWGG	1 cut(s)	1087
ErhI	CCWWGG	1 cut(s)	1087
FaeI	CATG	5 cut(s)	366, 620, 655, 923, 1124
FaqI	GGGAC	3 cut(s)	226, 1130, 1232
FatI	CATG	5 cut(s)	362, 616, 651, 919, 1120
FauNDI	CATATG	3 cut(s)	598, 871, 1242
Fnu4HI	GCNGC	4 cut(s)	74, 227, 591, 1236
FokI	GGATG	3 cut(s)	188, 989, 1311
Fsp4HI	GCNGC	4 cut(s)	74, 227, 591, 1236
FspBI	CTAG	1 cut(s)	1115
GlaI	GCGC	1 cut(s)	1234
GluI	GCNGC	4 cut(s)	74, 227, 591, 1236
GsaI	CCCAGC	4 cut(s)	80, 101, 162, 189
HaeII	RGCGCY	1 cut(s)	1236
HaeIII	GGCC	2 cut(s)	642, 1173
HapII	CCGG	4 cut(s)	269, 346, 450, 1096
HhaI	GCGC	1 cut(s)	1235
Hin1II	CATG	5 cut(s)	366, 620, 655, 923, 1124
Hin6I	GCGC	1 cut(s)	1233
HinP1I	GCGC	1 cut(s)	1233
HincII	GTYRAC	1 cut(s)	1212
HindII	GTYRAC	1 cut(s)	1212
HinfI	GANTC	3 cut(s)	118, 559, 1070
HpaII	CCGG	4 cut(s)	269, 346, 450, 1096
HphI	GGTGA	2 cut(s)	341, 761
Hpy166II	GTNNAC	2 cut(s)	1112, 1212
Hpy188I	TCNGA	4 cut(s)	428, 631, 741, 909
Hpy188III	TCNNGA	7 cut(s)	346, 432, 581, 652, 1067, 1135, 1266
Hpy8I	GTNNAC	2 cut(s)	1112, 1212
HpyAV	CCTTC	3 cut(s)	926, 1016, 1272
HpyCH4III	ACNGT	4 cut(s)	153, 822, 1144, 1225
HpyCH4IV	ACGT	2 cut(s)	1108, 1214
HpyCH4V	TGCA	8 cut(s)	385, 464, 590, 686, 714, 923, 960, 1276
HpyF10VI	GCNNNNNNNGC	4 cut(s)	130, 711, 920, 1179
HpyF3I	CTNAG	2 cut(s)	569, 837
HpySE526I	ACGT	2 cut(s)	1108, 1214
Hsp92II	CATG	5 cut(s)	366, 620, 655, 923, 1124
HspAI	GCGC	1 cut(s)	1233
Kpn2I	TCCGGA	1 cut(s)	345
Kzo9I	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
LmnI	GCTCC	3 cut(s)	805, 1097, 1154
Lsp1109I	GCAGC	4 cut(s)	60, 238, 602, 1222
LweI	GCATC	1 cut(s)	1333
MaeI	CTAG	1 cut(s)	1115
MaeII	ACGT	2 cut(s)	1108, 1214
MalI	GATC	6 cut(s)	108, 430, 579, 585, 776, 1065
MboI	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
MboII	GAAGA	3 cut(s)	270, 348, 1273
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	2 cut(s)	106, 428
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	4 cut(s)	482, 636, 763, 973
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	2 cut(s)	347, 443
MroI	TCCGGA	1 cut(s)	345
MroXI	GAANNNNTTC	1 cut(s)	625
MseI	TTAA	1 cut(s)	972
MspI	CCGG	4 cut(s)	269, 346, 450, 1096
MspR9I	CCNGG	4 cut(s)	126, 270, 1096, 1175
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	2 cut(s)	665, 716
MvaI	CCWGG	2 cut(s)	126, 1175
MwoI	GCNNNNNNNGC	4 cut(s)	130, 711, 920, 1179
NciI	CCSGG	2 cut(s)	270, 1096
NdeI	CATATG	3 cut(s)	598, 871, 1242
NdeII	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
NlaIII	CATG	5 cut(s)	366, 620, 655, 923, 1124
NlaIV	GGNNCC	5 cut(s)	82, 295, 312, 1093, 1248
PagI	TCATGA	1 cut(s)	651
PctI	GAATGC	2 cut(s)	665, 716
PdmI	GAANNNNTTC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	559, 1070
PflMI	CCANNNNNTGG	2 cut(s)	140, 1088
PfoI	TCCNGGA	1 cut(s)	1094
PkrI	GCNGC	4 cut(s)	75, 228, 592, 1237
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	1109
Psp6I	CCWGG	2 cut(s)	124, 1173
PspFI	CCCAGC	4 cut(s)	76, 97, 158, 185
PspGI	CCWGG	2 cut(s)	124, 1173
PspN4I	GGNNCC	5 cut(s)	82, 295, 312, 1093, 1248
PspPI	GGNCC	3 cut(s)	266, 311, 1246
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	2 cut(s)	106, 428
RsaI	GTAC	3 cut(s)	931, 1080, 1199
RsaNI	GTAC	3 cut(s)	930, 1079, 1198
SaqAI	TTAA	1 cut(s)	972
SatI	GCNGC	4 cut(s)	74, 227, 591, 1236
Sau3AI	GATC	6 cut(s)	106, 428, 577, 583, 774, 1063
Sau96I	GGNCC	3 cut(s)	266, 311, 1246
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	4 cut(s)	126, 270, 1096, 1175
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	1 cut(s)	1333
SfcI	CTRYAG	3 cut(s)	588, 798, 1191
SinI	GGWCC	3 cut(s)	266, 311, 1246
Sse9I	AATT	4 cut(s)	482, 636, 763, 973
SsiI	CCGC	4 cut(s)	288, 479, 692, 1182
SspMI	CTAG	1 cut(s)	1115
StyD4I	CCNGG	4 cut(s)	124, 268, 1094, 1173
StyI	CCWWGG	1 cut(s)	1087
TaaI	ACNGT	4 cut(s)	153, 822, 1144, 1225
TaiI	ACGT	2 cut(s)	1111, 1217
TasI	AATT	4 cut(s)	482, 636, 763, 973
TfiI	GAWTC	2 cut(s)	559, 1070
Tru1I	TTAA	1 cut(s)	972
Tru9I	TTAA	1 cut(s)	972
TscAI	CASTG	4 cut(s)	570, 967, 1063, 1107
TseI	GCWGC	4 cut(s)	73, 226, 590, 1235
TspDTI	ATGAA	7 cut(s)	615, 648, 668, 888, 908, 1005, 1278
TspGWI	ACGGA	3 cut(s)	317, 1167, 1215
TspRI	CASTG	4 cut(s)	570, 967, 1063, 1107
Van91I	CCANNNNNTGG	2 cut(s)	140, 1088
VpaK11BI	GGWCC	3 cut(s)	266, 311, 1246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1155
XmnI	GAANNNNTTC	1 cut(s)	625
XspI	CTAG	1 cut(s)	1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.