Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0005327

Physical Location & Seq

Genomic Coordinates Reverse (-)

1031876 .. 1036579

Gene Structure 4704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00850.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGTTGTCTTCTTCCCTTATGGGTAGGTGTTGGTTTAGTGGGCTTTTGACTGTGTTGTTGGGGTGTGAGTGGTTGTTGCTGTTGTTGGGGTGTGAGTGGTTGTTGCTGCTGGGTGCAGTGGAGGGATACCCAGCAGAGGATCTGGTAGTGAGTCTGCCTGGTCAGCCAAGTGTTGGGTTCAAACAGTATGCTGGGTATGTTGATGTGGATGTGAAAGCTGGGAGGAGTTTGTTTTACTACTTTGCTGAAGCAGATAAGCAGCCTGACAAGAAGCCCCTCACTCTTTGGCTCAATGGAGGTAAGCTCTCACCCTTTTCTGGGTTTCTTGAAAGCAAATTGCAAACATTGGTTAAACTCTGCTGTAATATGTTCAAACCTTTTCCTCAATATAATCGTTGCAGTTACAATTTTAGTTTTTACTCTTTCTTTCCCACATTTCTTGTGTACGAATTATCATTTGGAAACAGTTCTTACCGTCTGAACTGTTTATCTACAGGGCACTACATACCGCAATTGGCCGTTGCTATATTAGACCATAATAAACAATCAACAGGTTTCAAGTTCAATCTTAAAGGGGTTGCTATTGGGAATCCACTGCTGAGACTTGATCGTGATGCTCTGGCAACATATGAATACTTTTGGTCTCATGGAATGATTTCTGATGAAATTGGCCTTACTATCACGAAGGAATGCGATTTTGACGATTATGTCTCTGCAAATACTCACAATTTAAGCCTTGAATGCAACAAAGCAATATCTCAAGCAAATCAAATAGTTGGTGATTACATAAACAATTACGATGTGATTCTTGATGTTTGTTATCCATCTATAGTGGAGCAAGAGTTGAGACTGCGGAAAATGGCTACTAAGATAAGTGTTGGAGTTGATGTATGTATGACATATGAAAGACGTTTTTATTTGAACCTTCCTGAAGTTCAGAAAGCCCTTCATGCAAATCGTACAAACTTGCCTTATACTTGGAGTATGTGCAGTGGCGTTCTTAATTACAGCGATACTGATGAAAACATCAACATCCTTCCCTTGCTCACAAGGATAGTTCAAAATCATATTCCTGTTTGGGTTTTCAGCGATTCTGTTGTACCATTCCTTGGCTCCCGGACACTGATACGTGAACTAGCACATGACCTAAAGTTCCCGATAACAGTCCCATACGGAGCTTGGTTTCACAAAGGCCAGGTGGGCGGTTGGGCTACAGAGTACGGAAATCTGTTGACCTTCGCCACAGTAAGGGGTGCTGCTCATATGGTCCCCTATGCTCAACCTTCAAGAGCATTGCACCTCTTCAGTTCATTTGTTCATGGTCGAAGACTGCCCAACACAACGCTTCCTTCCATTTATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005623 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

455

Amino Acids

51.31

Weight (kDa)

6.6

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43780 AT2G12480 AT5G42230 AT5G42230 AT5G42240
fragaria_vesca	FvH4_2g14630 FvH4_2g14630
malus_domestica	MD05G1015500.v1.1 MD10G1015500.v1.1
prunus_persica	Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1 Prupe.8G019200_v2.0.a1
pyrus_communis	pycom05g00840 pycom05g00850 pycom05g00860
rosa_chinensis	RchiOBHm_Chr6g0277101
rosa_laevigata	RLG00000013331 RLG00000013333
rosa_multiflora	Rmu_sc0000656.1_g000003 Rmu_sc0000656.1_g000027 Rmu_sc0006244.1_g000061
rosa_roxburghii	Rroxscaffold_7G00191590 Rroxscaffold_7G00191610
rosa_rugosa	Rorug06G0106300
rosa_samantha	Rh6AG216400 Rh6BG221000 Rh6DG213400
rosa_wichuraiana	Rw6G018880 Rw6G018900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	707
AccB7I	CCANNNNNTGG	2 cut(s)	173, 1109
AciI	CCGC	3 cut(s)	509, 853, 1203
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	516
AcuI	CTGAAG	3 cut(s)	267, 951, 1288
AfaI	GTAC	4 cut(s)	446, 961, 1101, 1220
AfiI	CCNNNNNNNGG	6 cut(s)	136, 173, 317, 318, 1109, 1248
AgsI	TTSAA	9 cut(s)	181, 329, 373, 559, 565, 740, 922, 1061, 1287
AjnI	CCWGG	2 cut(s)	157, 1194
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	3 cut(s)	218, 304, 1178
AluI	AGCT	3 cut(s)	218, 304, 1178
Alw26I	GTCTC	4 cut(s)	595, 648, 715, 841
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	3 cut(s)	516, 670, 1192
ApeKI	GCWGC	3 cut(s)	106, 259, 1256
Asp700I	GAANNNNTTC	2 cut(s)	466, 655
AspS9I	GGNCC	1 cut(s)	1267
AsuC2I	CCSGG	1 cut(s)	1117
AsuHPI	GGTGA	2 cut(s)	300, 791
AvaII	GGWCC	1 cut(s)	1267
BaeGI	GKGCMC	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	1333
BbvI	GCAGC	3 cut(s)	93, 271, 1243
BccI	CCATC	1 cut(s)	832
BceAI	ACGGC	1 cut(s)	503
BciT130I	CCWGG	2 cut(s)	159, 1196
BciVI	GTATCC	1 cut(s)	119
BcnI	CCSGG	1 cut(s)	1117
BcoDI	GTCTC	4 cut(s)	595, 648, 715, 841
BfaI	CTAG	1 cut(s)	1136
BfmI	CTRYAG	3 cut(s)	492, 828, 1212
BfuI	GTATCC	1 cut(s)	119
BglI	GCCNNNNNGGC	1 cut(s)	1200
BisI	GCNGC	3 cut(s)	107, 260, 1257
BlsI	GCNGC	3 cut(s)	108, 261, 1258
Bme1390I	CCNGG	3 cut(s)	159, 1117, 1196
Bme18I	GGWCC	1 cut(s)	1267
BmgT120I	GGNCC	1 cut(s)	1267
BmiI	GGNNCC	2 cut(s)	1114, 1269
BmrFI	CCNGG	3 cut(s)	159, 1117, 1196
BmsI	GCATC	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	1333
BplI	GAGNNNNNCTC	2 cut(s)	288, 320
BpuEI	CTTGAG	1 cut(s)	744
BpuMI	CCSGG	1 cut(s)	1117
BsaAI	YACGTR	1 cut(s)	1130
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	1 cut(s)	1108
BsaXI	ACNNNNNCTCC	4 cut(s)	827, 857, 873, 903
Bsc4I	CCNNNNNNNGG	6 cut(s)	136, 173, 317, 318, 1109, 1248
Bse3DI	GCAATG	1 cut(s)	1292
BseBI	CCWGG	2 cut(s)	159, 1196
BseDI	CCNNGG	1 cut(s)	1108
BseGI	GGATG	2 cut(s)	214, 1032
BseLI	CCNNNNNNNGG	6 cut(s)	136, 173, 317, 318, 1109, 1248
BseMI	GCAATG	1 cut(s)	1292
BseMII	CTCAG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	501
BseXI	GCAGC	3 cut(s)	93, 271, 1243
BseYI	CCCAGC	4 cut(s)	109, 130, 191, 218
BsgI	GTGCAG	2 cut(s)	135, 1009
BshFI	GGCC	3 cut(s)	518, 672, 1194
BsiSI	CCGG	1 cut(s)	1117
BslFI	GGGAC	2 cut(s)	1151, 1253
BslI	CCNNNNNNNGG	6 cut(s)	136, 173, 317, 318, 1109, 1248
BsmAI	GTCTC	4 cut(s)	595, 648, 715, 841
BsmFI	GGGAC	2 cut(s)	1151, 1253
BsmI	GAATGC	2 cut(s)	695, 746
BsnI	GGCC	3 cut(s)	518, 672, 1194
Bso31I	GGTCTC	1 cut(s)	648
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	2 cut(s)	139, 607
BspACI	CCGC	3 cut(s)	509, 853, 1203
BspANI	GGCC	3 cut(s)	518, 672, 1194
BspCNI	CTCAG	1 cut(s)	591
BspLI	GGNNCC	2 cut(s)	1114, 1269
BspPI	GGATC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	1292
BssECI	CCNNGG	1 cut(s)	1108
BssMI	GATC	2 cut(s)	139, 607
BssT1I	CCWWGG	1 cut(s)	1108
Bst2UI	CCWGG	2 cut(s)	159, 1196
Bst4CI	ACNGT	7 cut(s)	52, 186, 467, 476, 485, 1165, 1246
Bst6I	CTCTTC	1 cut(s)	1307
BstBAI	YACGTR	1 cut(s)	1130
BstDEI	CTNAG	2 cut(s)	599, 867
BstF5I	GGATG	2 cut(s)	214, 1032
BstKTI	GATC	2 cut(s)	142, 610
BstMAI	GTCTC	4 cut(s)	595, 648, 715, 841
BstMBI	GATC	2 cut(s)	139, 607
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 741, 950, 1200
BstNI	CCWGG	2 cut(s)	159, 1196
BstSCI	CCNGG	3 cut(s)	157, 1115, 1194
BstSFI	CTRYAG	3 cut(s)	492, 828, 1212
BstSLI	GKGCMC	1 cut(s)	501
BstV1I	GCAGC	3 cut(s)	93, 271, 1243
BstV2I	GAAGAC	1 cut(s)	1333
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	518, 672, 1194
BtsCI	GGATG	2 cut(s)	214, 1032
BtsI	GCAGTG	3 cut(s)	123, 593, 997
BtsIMutI	CAGTG	4 cut(s)	123, 593, 997, 1121
Cfr13I	GGNCC	1 cut(s)	1267
Csp6I	GTAC	4 cut(s)	445, 960, 1100, 1219
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviAII	CATG	4 cut(s)	647, 950, 1142, 1319
CviQI	GTAC	4 cut(s)	445, 960, 1100, 1219
DdeI	CTNAG	2 cut(s)	599, 867
DpnI	GATC	2 cut(s)	141, 609
DpnII	GATC	2 cut(s)	139, 607
DrdI	GACNNNNNNGTC	1 cut(s)	707
DseDI	GACNNNNNNGTC	1 cut(s)	707
EaeI	YGGCCR	1 cut(s)	516
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
Eco130I	CCWWGG	1 cut(s)	1108
Eco31I	GGTCTC	1 cut(s)	648
Eco47I	GGWCC	1 cut(s)	1267
Eco57I	CTGAAG	3 cut(s)	267, 951, 1288
EcoRII	CCWGG	2 cut(s)	157, 1194
EcoT14I	CCWWGG	1 cut(s)	1108
ErhI	CCWWGG	1 cut(s)	1108
FaeI	CATG	4 cut(s)	650, 953, 1145, 1322
FaqI	GGGAC	2 cut(s)	1151, 1253
FatI	CATG	4 cut(s)	646, 949, 1141, 1318
FauNDI	CATATG	3 cut(s)	628, 901, 1263
Fnu4HI	GCNGC	3 cut(s)	107, 260, 1257
FokI	GGATG	2 cut(s)	221, 1019
Fsp4HI	GCNGC	3 cut(s)	107, 260, 1257
FspBI	CTAG	1 cut(s)	1136
GluI	GCNGC	3 cut(s)	107, 260, 1257
GsaI	CCCAGC	4 cut(s)	113, 134, 195, 222
HaeIII	GGCC	3 cut(s)	518, 672, 1194
HapII	CCGG	1 cut(s)	1117
Hin1II	CATG	4 cut(s)	650, 953, 1145, 1322
HincII	GTYRAC	1 cut(s)	1233
HindII	GTYRAC	1 cut(s)	1233
HinfI	GANTC	4 cut(s)	151, 589, 805, 1091
HpaII	CCGG	1 cut(s)	1117
HphI	GGTGA	2 cut(s)	300, 791
Hpy166II	GTNNAC	3 cut(s)	445, 1133, 1233
Hpy188I	TCNGA	3 cut(s)	480, 661, 939
Hpy188III	TCNNGA	7 cut(s)	326, 611, 682, 809, 929, 1156, 1287
Hpy8I	GTNNAC	3 cut(s)	445, 1133, 1233
HpyAV	CCTTC	7 cut(s)	679, 935, 956, 1046, 1246, 1293, 1359
HpyCH4III	ACNGT	7 cut(s)	52, 186, 467, 476, 485, 1165, 1246
HpyCH4IV	ACGT	2 cut(s)	910, 1129
HpyCH4V	TGCA	8 cut(s)	116, 340, 399, 716, 744, 953, 990, 1297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 741, 950, 1200
HpyF3I	CTNAG	2 cut(s)	599, 867
HpySE526I	ACGT	2 cut(s)	910, 1129
Hsp92II	CATG	4 cut(s)	650, 953, 1145, 1322
Kzo9I	GATC	2 cut(s)	139, 607
LmnI	GCTCC	3 cut(s)	835, 1118, 1175
Lsp1109I	GCAGC	3 cut(s)	93, 271, 1243
LweI	GCATC	1 cut(s)	604
MaeI	CTAG	1 cut(s)	1136
MaeII	ACGT	2 cut(s)	910, 1129
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	2 cut(s)	141, 609
MboI	GATC	2 cut(s)	139, 607
MboII	GAAGA	3 cut(s)	3, 1294, 1338
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	8 cut(s)	335, 406, 449, 512, 666, 727, 793, 1003
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	859
MnlI	CCTC	7 cut(s)	115, 130, 216, 287, 290, 393, 1310
MroXI	GAANNNNTTC	2 cut(s)	466, 655
MseI	TTAA	4 cut(s)	351, 570, 731, 1002
MspI	CCGG	1 cut(s)	1117
MspR9I	CCNGG	3 cut(s)	159, 1117, 1196
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	2 cut(s)	695, 746
MvaI	CCWGG	2 cut(s)	159, 1196
MwoI	GCNNNNNNNGC	4 cut(s)	163, 741, 950, 1200
NciI	CCSGG	1 cut(s)	1117
NdeI	CATATG	3 cut(s)	628, 901, 1263
NdeII	GATC	2 cut(s)	139, 607
NlaIII	CATG	4 cut(s)	650, 953, 1145, 1322
NlaIV	GGNNCC	2 cut(s)	1114, 1269
PctI	GAATGC	2 cut(s)	695, 746
PdmI	GAANNNNTTC	2 cut(s)	466, 655
PfeI	GAWTC	3 cut(s)	589, 805, 1091
PflMI	CCANNNNNTGG	2 cut(s)	173, 1109
PfoI	TCCNGGA	1 cut(s)	1115
PkrI	GCNGC	3 cut(s)	108, 261, 1258
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Ppu21I	YACGTR	1 cut(s)	1130
Psp6I	CCWGG	2 cut(s)	157, 1194
PspFI	CCCAGC	4 cut(s)	109, 130, 191, 218
PspGI	CCWGG	2 cut(s)	157, 1194
PspN4I	GGNNCC	2 cut(s)	1114, 1269
PspPI	GGNCC	1 cut(s)	1267
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	4 cut(s)	446, 961, 1101, 1220
RsaNI	GTAC	4 cut(s)	445, 960, 1100, 1219
SaqAI	TTAA	4 cut(s)	351, 570, 731, 1002
SatI	GCNGC	3 cut(s)	107, 260, 1257
Sau3AI	GATC	2 cut(s)	139, 607
Sau96I	GGNCC	1 cut(s)	1267
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	3 cut(s)	159, 1117, 1196
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	604
SfcI	CTRYAG	3 cut(s)	492, 828, 1212
SinI	GGWCC	1 cut(s)	1267
SmlI	CTYRAG	1 cut(s)	759
SmoI	CTYRAG	1 cut(s)	759
Sse9I	AATT	8 cut(s)	335, 406, 449, 512, 666, 727, 793, 1003
SsiI	CCGC	3 cut(s)	509, 853, 1203
SspMI	CTAG	1 cut(s)	1136
StyD4I	CCNGG	3 cut(s)	157, 1115, 1194
StyI	CCWWGG	1 cut(s)	1108
TaaI	ACNGT	7 cut(s)	52, 186, 467, 476, 485, 1165, 1246
TaiI	ACGT	2 cut(s)	913, 1132
TaqI	TCGA	1 cut(s)	1324
TasI	AATT	8 cut(s)	335, 406, 449, 512, 666, 727, 793, 1003
TfiI	GAWTC	3 cut(s)	589, 805, 1091
Tru1I	TTAA	4 cut(s)	351, 570, 731, 1002
Tru9I	TTAA	4 cut(s)	351, 570, 731, 1002
TscAI	CASTG	4 cut(s)	123, 600, 997, 1128
TseI	GCWGC	3 cut(s)	106, 259, 1256
TspDTI	ATGAA	7 cut(s)	645, 678, 918, 938, 1035, 1299, 1307
TspGWI	ACGGA	2 cut(s)	1188, 1236
TspRI	CASTG	4 cut(s)	123, 600, 997, 1128
Van91I	CCANNNNNTGG	2 cut(s)	173, 1109
VpaK11BI	GGWCC	1 cut(s)	1267
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1176
XmnI	GAANNNNTTC	2 cut(s)	466, 655
XspI	CTAG	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.