Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

26295952 .. 26296712

Gene Structure 761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1134700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCACGGCGAAATCGACAGCCTTCACCAGCTCCTCCTCCACTCGCGGCCCCTCGAAACCCTTCGCCCTTGCCTCCTTTGGCTCATGCTAATCCTGGCCAAGTTGAATCTCCCCGATAAGGCCGTTGCCCATTTTAAATCCCTCCGCAGCCGGTTCCCTGATGAGCCCCCCTCTGTGTTTTTGTATAATTTGCTCCTTGAGTCTTCTCTCACGGAGAACCATGTAGAGTTCGTGTTGTGGCTGTATAAGGACATGATTGTCTCCGGGGTTAAGCCCGAAACATATACTTTTAATCTTTTGATATGGGCATTGTGTGAATCAGATTGTTGGATGATGCCCGCGAGGTGTTTGATAAAATGCGTGGCAAGGGTTGTCTACCGAATGAGTACAGTGTCGGAATTTTGGTTCGTGGGTATTATAGAGCTGGGCTTGCTGGCAGAGGTTTGGAAGTTTTGGATGAGGACTGATGAGGCCGAGAAGTTGGTAGAGAGGATGAGAGAGGATGGATTGTTTCTGGATGCCGTTACTTCCAATTCTAGGATTTCGGCTCTCTGTAGTGCCGGGAAAATCCTTGAAGCTTCTAGAATATTTAGAGATATGTATATAGATGATCAAGAGTTGGGGCTGCCTCAACCTAATGTTATAACATATAATTTGATGTTGCAAGGATTTTGCAAGGGATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

229

Amino Acids

26.4

Weight (kDa)

5.59

Isoelectric Point (pI)

44.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	57 - 105	3.3e-08	PPR repeat family
PPR_2	PF13041	173 - 226	1.3e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	644
AasI	GACNNNNNNGTC	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	2 cut(s)	46, 341
AciI	CCGC	3 cut(s)	46, 145, 339
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	398
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	2 cut(s)	118, 537
AgsI	TTSAA	2 cut(s)	106, 575
AjnI	CCWGG	1 cut(s)	93
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	3 cut(s)	31, 424, 578
AluI	AGCT	3 cut(s)	31, 424, 578
Alw26I	GTCTC	1 cut(s)	265
AoxI	GGCC	4 cut(s)	47, 96, 120, 471
ApeKI	GCWGC	2 cut(s)	147, 625
ApoI	RAATTY	1 cut(s)	398
Asp700I	GAANNNNTTC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	48
AsuC2I	CCSGG	2 cut(s)	265, 562
AsuHPI	GGTGA	1 cut(s)	17
BalI	TGGCCA	1 cut(s)	98
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	159, 612
BccI	CCATC	1 cut(s)	497
BceAI	ACGGC	3 cut(s)	22, 107, 506
BciT130I	CCWGG	1 cut(s)	95
BclI	TGATCA	1 cut(s)	610
BcnI	CCSGG	2 cut(s)	265, 562
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	537, 582
BfmI	CTRYAG	1 cut(s)	553
BisI	GCNGC	3 cut(s)	47, 148, 626
BlsI	GCNGC	3 cut(s)	48, 149, 627
Bme1390I	CCNGG	3 cut(s)	95, 265, 562
BmgT120I	GGNCC	1 cut(s)	48
BmiI	GGNNCC	2 cut(s)	50, 155
BmrFI	CCNGG	3 cut(s)	95, 265, 562
BmsI	GCATC	2 cut(s)	324, 508
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	155, 187
BpuEI	CTTGAG	1 cut(s)	218
BpuMI	CCSGG	2 cut(s)	265, 562
BsaJI	CCNNGG	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	2 cut(s)	118, 537
Bse118I	RCCGGY	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	6 cut(s)	336, 462, 498, 508, 523, 686
BseLI	CCNNNNNNNGG	2 cut(s)	118, 537
BseRI	GAGGAG	2 cut(s)	23, 26
BseXI	GCAGC	2 cut(s)	159, 612
BseYI	CCCAGC	1 cut(s)	424
Bsh1236I	CGCG	2 cut(s)	46, 341
BshFI	GGCC	4 cut(s)	49, 98, 122, 473
BsiSI	CCGG	3 cut(s)	151, 264, 561
BslI	CCNNNNNNNGG	2 cut(s)	118, 537
BsmAI	GTCTC	1 cut(s)	265
BsnI	GGCC	4 cut(s)	49, 98, 122, 473
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp143I	GATC	1 cut(s)	610
BspACI	CCGC	3 cut(s)	46, 145, 339
BspANI	GGCC	4 cut(s)	49, 98, 122, 473
BspFNI	CGCG	2 cut(s)	46, 341
BspLI	GGNNCC	2 cut(s)	50, 155
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	1 cut(s)	610
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	391
BstC8I	GCNNGC	3 cut(s)	339, 431, 435
BstF5I	GGATG	6 cut(s)	336, 462, 498, 508, 523, 686
BstFNI	CGCG	2 cut(s)	46, 341
BstKTI	GATC	1 cut(s)	613
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	610
BstMWI	GCNNNNNNNGC	1 cut(s)	430
BstNI	CCWGG	1 cut(s)	95
BstSCI	CCNGG	3 cut(s)	93, 263, 560
BstSFI	CTRYAG	1 cut(s)	553
BstUI	CGCG	2 cut(s)	46, 341
BstV1I	GCAGC	2 cut(s)	159, 612
BstV2I	GAAGAC	1 cut(s)	195
BsuRI	GGCC	4 cut(s)	49, 98, 122, 473
BtsCI	GGATG	6 cut(s)	336, 462, 498, 508, 523, 686
BtsIMutI	CAGTG	1 cut(s)	396
Cac8I	GCNNGC	3 cut(s)	339, 431, 435
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	48
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	3 cut(s)	85, 221, 253
CviQI	GTAC	1 cut(s)	387
DpnI	GATC	1 cut(s)	612
DpnII	GATC	1 cut(s)	610
DraI	TTTAAA	1 cut(s)	136
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	168
EcoRII	CCWGG	1 cut(s)	93
EcoT38I	GRGCYC	1 cut(s)	168
FaeI	CATG	3 cut(s)	88, 224, 256
FatI	CATG	3 cut(s)	84, 220, 252
FauI	CCCGC	1 cut(s)	346
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	3 cut(s)	47, 148, 626
FokI	GGATG	5 cut(s)	343, 469, 505, 515, 530
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	47, 148, 626
FspBI	CTAG	2 cut(s)	537, 582
GluI	GCNGC	3 cut(s)	47, 148, 626
GsaI	CCCAGC	1 cut(s)	428
HaeIII	GGCC	4 cut(s)	49, 98, 122, 473
HapII	CCGG	3 cut(s)	151, 264, 561
Hin1II	CATG	3 cut(s)	88, 224, 256
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	3 cut(s)	106, 200, 317
HpaII	CCGG	3 cut(s)	151, 264, 561
HphI	GGTGA	1 cut(s)	17
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	2 cut(s)	322, 397
Hpy188III	TCNNGA	3 cut(s)	515, 582, 614
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	32, 71
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4V	TGCA	3 cut(s)	4, 664, 675
HpyF10VI	GCNNNNNNNGC	1 cut(s)	430
Hsp92II	CATG	3 cut(s)	88, 224, 256
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	1 cut(s)	610
LmnI	GCTCC	2 cut(s)	36, 198
Lsp1109I	GCAGC	2 cut(s)	159, 612
LweI	GCATC	2 cut(s)	324, 508
MaeI	CTAG	2 cut(s)	537, 582
MaeIII	GTNAC	1 cut(s)	523
MalI	GATC	1 cut(s)	612
MboI	GATC	1 cut(s)	610
MboII	GAAGA	1 cut(s)	195
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	98
MluCI	AATT	4 cut(s)	187, 398, 532, 652
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	308, 375
Mox20I	TGGCCA	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	60
MscI	TGGCCA	1 cut(s)	98
MseI	TTAA	3 cut(s)	135, 270, 291
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	3 cut(s)	151, 264, 561
MspR9I	CCNGG	3 cut(s)	95, 265, 562
MvaI	CCWGG	1 cut(s)	95
MvnI	CGCG	2 cut(s)	46, 341
MwoI	GCNNNNNNNGC	1 cut(s)	430
NciI	CCSGG	2 cut(s)	265, 562
NdeII	GATC	1 cut(s)	610
NlaIII	CATG	3 cut(s)	88, 224, 256
NlaIV	GGNNCC	2 cut(s)	50, 155
NmeAIII	GCCGAG	1 cut(s)	499
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PdmI	GAANNNNTTC	1 cut(s)	60
PfeI	GAWTC	2 cut(s)	106, 317
PkrI	GCNGC	3 cut(s)	48, 149, 627
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PsiI	TTATAA	1 cut(s)	644
Psp6I	CCWGG	1 cut(s)	93
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	50, 155
PspPI	GGNCC	1 cut(s)	48
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SaqAI	TTAA	3 cut(s)	135, 270, 291
SatI	GCNGC	3 cut(s)	47, 148, 626
Sau3AI	GATC	1 cut(s)	610
Sau96I	GGNCC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	3 cut(s)	95, 265, 562
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	6 cut(s)	33, 347, 426, 444, 580, 637
SfaNI	GCATC	2 cut(s)	324, 508
SfcI	CTRYAG	1 cut(s)	553
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	187, 398, 532, 652
SsiI	CCGC	3 cut(s)	46, 145, 339
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	2 cut(s)	537, 582
StyD4I	CCNGG	3 cut(s)	93, 263, 560
TaaI	ACNGT	1 cut(s)	391
TaqI	TCGA	2 cut(s)	15, 54
TasI	AATT	4 cut(s)	187, 398, 532, 652
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	106, 317
Tru1I	TTAA	3 cut(s)	135, 270, 291
Tru9I	TTAA	3 cut(s)	135, 270, 291
TscAI	CASTG	1 cut(s)	396
TseI	GCWGC	2 cut(s)	147, 625
TspGWI	ACGGA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	375
XmnI	GAANNNNTTC	1 cut(s)	60
XspI	CTAG	2 cut(s)	537, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.