RchiOBHm_Chr6g0280761

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004810
Physical Location & Seq
Reverse (-)
44147008 .. 44151486
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25178

Sequence Viewer

Length: 2592 bp
ATGGAGGAAGCAACCTCACTCCCCAAAGCTCTACTCAACAACACCAACAATCCCAAACTCGCATGGCACCTCTTCAAGCGCATTCTTTCCTCCTCCTCCTCACATCTCTCCCTCCGCTCCATTACCATCATAGCCCGCATCCTCATCTCCGCCAAAATGCACCCCGAAATCGACGCCCTCCACCACCTCCTCCTCCACTCACAGCCCCCCCAAACCCTCCGCCCCTGCCTCGTATCCCTCGTGCGAATCTTCGCCAAGTCACGCCTCGCCGACAAGACCCTTTCGCATTTTAAGTCTCTCCGAAGCCACTTCCCCAATGACCCTCCTTCTGTTTATTTGTATAATCTGCTTCTCGAGTCCGCTCTCAGGGAGAACGATGTGGATTACGTTTTGTGGTTGTACAAGGATATGATTGTTTCCGGGGTTAAGCCCGAAACGTATACTTTTAATCTTCTGATCTGTGCGCTGTGCGATTGTGGTCGTTTGGAAGACGCACGCCAGGTGTTCGATAAAATGCGTGACAAGGGTTGTCAGCCGAATGAGTACAGCGTTGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGCTTAGCAGTGGAGGGTTGGAGGTTTTGGATTGTGGTGTTGTGCCCAATAGGGTTGTGTATAATACTTTGGTTTCGAGTTTTTGTAAAGAAGGCAGGACTGATGAGGCCGAGAAATTGGTGGAGAGGATGCGAGAGGAGGGTATGTTTCCGGATGTCATTACTTTCAATTCGAGGATATCGGCTCTCTGTACTGCAGGGAAGATTCCTGAAGCGTCTAGAATATTTAGAGATATGCATATGGATCAGGCTTTGGGGCTGCCGCAACCCAATGTTGTAACGTATAATCTGATGTTACAAGGATTTTGCAAGGAAGGGATGTTAGAGGAAGCAGAGAGCTTGTTCAAATCTATGGAAAAAGCTGGTGGTTTAATTAATATAGAGAGCTATAATATATGGTTGTTGGGTTTGGTCAGGAATAAGAAGCTCTTGGAGGCTCGACTGGTTCTGAAAGAGATGGTAGATAAGGGAATAGAACCCAACGTTTACTCATATAACATTGTGATAGATGGGTTATGCAAAAATGGGATGCTCCGTGATGCAAGAATTGTGATGGGTCTGATGGCAAGAAACAATATTTCGCCAGATACGGTTACCTACAGTACTTTACTACACGGATACTGCAATAAAGGGAAGATATTTGAAGCCAACAATGTTCTGCAAGAGATGATAACAAAGAATTGCTTCCCAAATACTCATACTTGCAACATTCTGCTGCACAGCCTATGGAAAGAGGGAAGAACATCAGAAGCGGAGGAACTGCTGCGAAAGATGAATGAGAGAGGTTATGGTTTAGATACTGTGACCTGCAACATCGTGATCGATGGTCTGTGCAATGATGGGCAATTGGACAAAGCAATTGAAATTGTAAGTGGGATGTGGACTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAATTCCTTTGTTGGTCTGGTTGATGATAGTAATAATGGGAATAAATGCCTTCCAGATTTGATCTCATATTCAACCATAATTAGTGGGTTGTGCAAGGCTGGGAGGCTTGATGAAGCTAAGAAGAAGTTCATGGAGATGATGGGCAAAAACTTGCACCCTGATTCAGTGATTTATGATACTTTTATACATAGCTTTTGTAAACAAGGAAGGATATCATCTGCATTTCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAAACTTATAATTCACTAATCCTGGGCTTAGGCAGTAAAAAGCAAATATTTGAAATATATGGGCTGATGGATGAAATGAAAGAGAGGGGAGTCCCTCCTGATGTCTGTACTTACAATAATATGATGTACTGTCTCTGTGAAGTAGAGAGAGTCAAAGATGCAACTTCTCTTTTAGATGAAATGCTGCAAAAGGGCATATCCCCGAATATTTCTACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACAGGAGTTATTTGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTCGCAAAAGCTACAGAGCTATTTGAAGAAGCATTGGACAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTCATTGATAGACTTTGCAAGGATCAAAAGTTAGAGGATGCCTGTAGCATTCTTCACGATATGATGAATAAGGGATACGGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTTGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTGGTGGAAAACCAAAGTCTCGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAGTCGTATTGAAAACTCTTAAGAGGGTGCAGAAAGGCTGGGGTCGAGCGAATCTAATGAGTTTGCAAACCCAGAAAGATGAATTTCTTGATTATTGA

Protein Analysis

863

Amino Acids

96.97

Weight (kDa)

6.81

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 109 - 158 6.6e-09 PPR repeat family
PPR_3 PF13812 134 - 180 5.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 141 - 173 1.6e-10 PPR repeat
PPR_2 PF13041 144 - 193 2.7e-15 PPR repeat family
PPR PF01535 147 - 177 1.7e-07 PPR repeat
PPR_3 PF13812 206 - 256 7.9e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 207 - 239 3.9e-13 PPR repeat
PPR_2 PF13041 210 - 258 1.1e-13 PPR repeat family
PPR PF01535 213 - 242 1.1e-08 PPR repeat
PPR_1 PF12854 242 - 273 1.7e-07 PPR repeat
PPR_1 PF12854 283 - 313 2.3e-11 PPR repeat
PPR_2 PF13041 284 - 326 2.7e-12 PPR repeat family
PPR PF01535 287 - 316 7.2e-10 PPR repeat
PPR_long PF17177 295 - 454 5.7e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 307 - 364 2.6e-06 Pentatricopeptide repeat domain
PPR_2 PF13041 320 - 368 1.4e-13 PPR repeat family
PPR_3 PF13812 343 - 394 8.8e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 350 - 375 8.2e-10 PPR repeat
PPR_2 PF13041 354 - 403 4.9e-16 PPR repeat family
TPR_24 PF23276 378 - 483 5.7e-09 Fungal tetratrico peptide repeats
PPR_3 PF13812 382 - 434 4.1e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 386 - 417 9.6e-11 PPR repeat
PPR_2 PF13041 389 - 436 2e-14 PPR repeat family
PPR PF01535 392 - 422 1e-06 PPR repeat
PPR_2 PF13041 424 - 473 6.1e-12 PPR repeat family
PPR_1 PF12854 456 - 487 1.7e-06 PPR repeat
PPR_1 PF12854 515 - 545 7.3e-12 PPR repeat
PPR_2 PF13041 517 - 555 6.4e-08 PPR repeat family
PPR PF01535 520 - 549 9.2e-07 PPR repeat
PPR_3 PF13812 543 - 596 1.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 548 - 581 3.7e-10 PPR repeat
PPR_2 PF13041 552 - 599 2.6e-13 PPR repeat family
PPR_long PF17177 569 - 670 2.6e-07 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 588 - 635 5e-12 PPR repeat family
PPR_3 PF13812 611 - 669 5.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 618 - 650 4.9e-08 PPR repeat
PPR_2 PF13041 622 - 671 1.6e-16 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1776
Acc36I ACCTGC 1 cut(s) 1397
AccB1I GGYRCC 1 cut(s) 66
AccBSI CCGCTC 2 cut(s) 117, 362
AccI GTMKAC 1 cut(s) 440
AccII CGCG 1 cut(s) 567
AccIII TCCGGA 1 cut(s) 733
AciI CCGC 9 cut(s) 115, 136, 150, 220, 360, 567, 845, 1334, 1478
AclI AACGTT 1 cut(s) 1065
AclWI GGATC 2 cut(s) 834, 2229
AcoI YGGCCR 1 cut(s) 2068
AcsI RAATTY 2 cut(s) 1498, 2576
AcuI CTGAAG 2 cut(s) 813, 1969
AcyI GRCGYC 1 cut(s) 174
AfaI GTAC 6 cut(s) 401, 545, 775, 1186, 1876, 1895
AfiI CCNNNNNNNGG 1 cut(s) 366
AflII CTTAAG 1 cut(s) 2513
AjnI CCWGG 2 cut(s) 498, 1788
Alw26I GTCTC 3 cut(s) 300, 1904, 2451
AlwI GGATC 2 cut(s) 834, 2229
Ama87I CYCGRG 1 cut(s) 353
Aor13HI TCCGGA 1 cut(s) 733
AoxI GGCC 2 cut(s) 690, 2068
ApeKI GCWGC 4 cut(s) 841, 1297, 1345, 1951
ApoI RAATTY 2 cut(s) 1498, 2576
AseI ATTAAT 2 cut(s) 957, 1994
Asp700I GAANNNNTTC 2 cut(s) 1265, 1622
AspLEI GCGC 2 cut(s) 81, 466
AsuC2I CCSGG 1 cut(s) 421
AvaI CYCGRG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 630
BalI TGGCCA 1 cut(s) 2070
BanI GGYRCC 1 cut(s) 66
BauI CACGAG 2 cut(s) 239, 2448
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 4 cut(s) 828, 1284, 1332, 1938
BcgI CGANNNNNNTGC 2 cut(s) 2479, 2513
BciT130I CCWGG 2 cut(s) 500, 1790
BciVI GTATCC 3 cut(s) 244, 1193, 2267
BcnI CCSGG 1 cut(s) 421
BcoDI GTCTC 3 cut(s) 300, 1904, 2451
BfaI CTAG 1 cut(s) 801
BfmI CTRYAG 4 cut(s) 777, 1180, 2136, 2242
BfrI CTTAAG 1 cut(s) 2513
BfuAI ACCTGC 1 cut(s) 1397
BfuI GTATCC 3 cut(s) 244, 1193, 2267
BglII AGATCT 1 cut(s) 2197
BisI GCNGC 6 cut(s) 842, 845, 1298, 1346, 1479, 1952
BlpI GCTNAGC 1 cut(s) 587
BlsI GCNGC 6 cut(s) 843, 846, 1299, 1347, 1480, 1953
BmcAI AGTACT 1 cut(s) 1186
Bme1390I CCNGG 3 cut(s) 421, 500, 1790
BmeT110I CYCGRG 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 68
BmrFI CCNGG 3 cut(s) 421, 500, 1790
BmsI GCATC 8 cut(s) 147, 702, 1101, 1111, 1915, 2227, 2300, 2387
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 2136
Bpu10I CCTNAGC 1 cut(s) 1795
Bpu1102I GCTNAGC 1 cut(s) 587
BpuMI CCSGG 1 cut(s) 421
Bsa29I ATCGAT 1 cut(s) 1404
BsaHI GRCGYC 1 cut(s) 174
BsaJI CCNNGG 2 cut(s) 420, 1789
BsaWI WCCGGW 1 cut(s) 733
BsaXI ACNNNNNCTCC 4 cut(s) 713, 743, 2109, 2139
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse1I ACTGG 2 cut(s) 1029, 2303
Bse3DI GCAATG 2 cut(s) 1423, 2049
BseAI TCCGGA 1 cut(s) 733
BseBI CCWGG 2 cut(s) 500, 1790
BseCI ATCGAT 1 cut(s) 1404
BseDI CCNNGG 2 cut(s) 420, 1789
BseGI GGATG 9 cut(s) 138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMI GCAATG 2 cut(s) 1423, 2049
BseMII CTCAG 1 cut(s) 379
BseNI ACTGG 2 cut(s) 1029, 2303
BseRI GAGGAG 6 cut(s) 82, 85, 88, 179, 182, 734
BseSI GKGCMC 1 cut(s) 630
BseXI GCAGC 4 cut(s) 828, 1284, 1332, 1938
BseYI CCCAGC 3 cut(s) 581, 1595, 2532
BsgI GTGCAG 2 cut(s) 1283, 2543
Bsh1236I CGCG 1 cut(s) 567
BshFI GGCC 2 cut(s) 692, 2070
BshNI GGYRCC 1 cut(s) 66
BshVI ATCGAT 1 cut(s) 1404
BsiHKCI CYCGRG 1 cut(s) 353
BsiSI CCGG 2 cut(s) 420, 734
BslFI GGGAC 1 cut(s) 1844
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 3 cut(s) 300, 1904, 2451
BsmFI GGGAC 1 cut(s) 1844
BsmI GAATGC 3 cut(s) 81, 1764, 2247
BsnI GGCC 2 cut(s) 692, 2070
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 630
Bsp13I TCCGGA 1 cut(s) 733
Bsp1407I TGTACA 1 cut(s) 399
Bsp143I GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
Bsp1720I GCTNAGC 1 cut(s) 587
BspACI CCGC 9 cut(s) 115, 136, 150, 220, 360, 567, 845, 1334, 1478
BspANI GGCC 2 cut(s) 692, 2070
BspCNI CTCAG 1 cut(s) 378
BspDI ATCGAT 1 cut(s) 1404
BspEI TCCGGA 1 cut(s) 733
BspFNI CGCG 1 cut(s) 567
BspLI GGNNCC 1 cut(s) 68
BspMAI CTGCAG 1 cut(s) 781
BspMI ACCTGC 1 cut(s) 1397
BspPI GGATC 2 cut(s) 834, 2229
BspT107I GGYRCC 1 cut(s) 66
BspTI CTTAAG 1 cut(s) 2513
BsrBI CCGCTC 2 cut(s) 117, 362
BsrDI GCAATG 2 cut(s) 1423, 2049
BsrGI TGTACA 1 cut(s) 399
BsrI ACTGG 2 cut(s) 1029, 2303
BssECI CCNNGG 2 cut(s) 420, 1789
BssMI GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
BssNAI GTATAC 1 cut(s) 441
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 2 cut(s) 239, 2448
Bst1107I GTATAC 1 cut(s) 441
Bst2BI CACGAG 2 cut(s) 239, 2448
Bst2UI CCWGG 2 cut(s) 500, 1790
Bst4CI ACNGT 4 cut(s) 1174, 1184, 1384, 1898
Bst6I CTCTTC 1 cut(s) 77
BstACI GRCGYC 1 cut(s) 174
BstAFI CTTAAG 1 cut(s) 2513
BstAUI TGTACA 1 cut(s) 399
BstC8I GCNNGC 2 cut(s) 136, 496
BstDEI CTNAG 5 cut(s) 365, 587, 1492, 1614, 1795
BstEII GGTNACC 1 cut(s) 1174
BstF5I GGATG 9 cut(s) 138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BstFNI CGCG 1 cut(s) 567
BstHHI GCGC 2 cut(s) 81, 466
BstKTI GATC 6 cut(s) 459, 829, 1404, 1560, 2200, 2224
BstMAI GTCTC 3 cut(s) 300, 1904, 2451
BstMBI GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
BstMWI GCNNNNNNNGC 2 cut(s) 573, 1761
BstNI CCWGG 2 cut(s) 500, 1790
BstPI GGTNACC 1 cut(s) 1174
BstSCI CCNGG 3 cut(s) 419, 498, 1788
BstSFI CTRYAG 4 cut(s) 777, 1180, 2136, 2242
BstSLI GKGCMC 1 cut(s) 630
BstUI CGCG 1 cut(s) 567
BstV1I GCAGC 4 cut(s) 828, 1284, 1332, 1938
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 2197
BstYI RGATCY 1 cut(s) 2197
BstZ17I GTATAC 1 cut(s) 441
Bsu15I ATCGAT 1 cut(s) 1404
BsuI GTATCC 3 cut(s) 244, 1193, 2267
BsuRI GGCC 2 cut(s) 692, 2070
BsuTUI ATCGAT 1 cut(s) 1404
BtsCI GGATG 9 cut(s) 138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BtsI GCAGTG 2 cut(s) 598, 2497
BtsIMutI CAGTG 3 cut(s) 598, 1668, 2497
BveI ACCTGC 1 cut(s) 1397
Cac8I GCNNGC 2 cut(s) 136, 496
CfoI GCGC 2 cut(s) 81, 466
ClaI ATCGAT 1 cut(s) 1404
CseI GACGC 3 cut(s) 182, 500, 786
Csp6I GTAC 6 cut(s) 400, 544, 774, 1185, 1875, 1894
CviAII CATG 5 cut(s) 63, 1469, 1627, 1738, 2339
CviQI GTAC 6 cut(s) 400, 544, 774, 1185, 1875, 1894
DdeI CTNAG 5 cut(s) 365, 587, 1492, 1614, 1795
DpnI GATC 6 cut(s) 458, 828, 1403, 1559, 2199, 2223
DpnII GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
EaeI YGGCCR 1 cut(s) 2068
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
EciI GGCGGA 2 cut(s) 139, 209
Eco32I GATATC 2 cut(s) 762, 1710
Eco57I CTGAAG 2 cut(s) 813, 1969
Eco88I CYCGRG 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 1174
EcoO65I GGTNACC 1 cut(s) 1174
EcoRI GAATTC 1 cut(s) 1498
EcoRII CCWGG 2 cut(s) 498, 1788
EcoRV GATATC 2 cut(s) 762, 1710
EcoT22I ATGCAT 1 cut(s) 822
FaeI CATG 5 cut(s) 66, 1472, 1630, 1741, 2342
FalI AAGNNNNNCTT 6 cut(s) 995, 1027, 1250, 1282, 2066, 2098
FaqI GGGAC 1 cut(s) 1844
FatI CATG 5 cut(s) 62, 1468, 1626, 1737, 2338
FauI CCCGC 2 cut(s) 143, 560
FauNDI CATATG 1 cut(s) 822
FblI GTMKAC 1 cut(s) 440
Fnu4HI GCNGC 6 cut(s) 842, 845, 1298, 1346, 1479, 1952
FokI GGATG 9 cut(s) 125, 724, 749, 913, 1123, 1471, 1850, 2249, 2278
Fsp4HI GCNGC 6 cut(s) 842, 845, 1298, 1346, 1479, 1952
FspBI CTAG 1 cut(s) 801
GlaI GCGC 2 cut(s) 80, 465
GluI GCNGC 6 cut(s) 842, 845, 1298, 1346, 1479, 1952
GsaI CCCAGC 3 cut(s) 585, 1599, 2536
GsuI CTGGAG 1 cut(s) 2136
HaeIII GGCC 2 cut(s) 692, 2070
HapII CCGG 2 cut(s) 420, 734
HgaI GACGC 3 cut(s) 182, 500, 786
HhaI GCGC 2 cut(s) 81, 466
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 5 cut(s) 66, 1472, 1630, 1741, 2342
Hin6I GCGC 2 cut(s) 79, 464
HinP1I GCGC 2 cut(s) 79, 464
HindIII AAGCTT 1 cut(s) 2001
HpaII CCGG 2 cut(s) 420, 734
Hpy166II GTNNAC 6 cut(s) 441, 1069, 1464, 1697, 2407, 2476
Hpy188I TCNGA 8 cut(s) 302, 456, 873, 1032, 1143, 1330, 1988, 2383
Hpy8I GTNNAC 6 cut(s) 441, 1069, 1464, 1697, 2407, 2476
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 9 cut(s) 336, 668, 890, 1556, 1698, 1726, 1993, 2305, 2378
HpyCH4III ACNGT 4 cut(s) 1174, 1184, 1384, 1898
HpyCH4IV ACGT 4 cut(s) 387, 437, 863, 1065
HpyF10VI GCNNNNNNNGC 2 cut(s) 573, 1761
HpyF3I CTNAG 5 cut(s) 365, 587, 1492, 1614, 1795
HpySE526I ACGT 4 cut(s) 387, 437, 863, 1065
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 5 cut(s) 66, 1472, 1630, 1741, 2342
HspAI GCGC 2 cut(s) 79, 464
Kpn2I TCCGGA 1 cut(s) 733
Kzo9I GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
LmnI GCTCC 2 cut(s) 122, 1119
Lsp1109I GCAGC 4 cut(s) 828, 1284, 1332, 1938
LweI GCATC 8 cut(s) 147, 702, 1101, 1111, 1915, 2227, 2300, 2387
MaeI CTAG 1 cut(s) 801
MaeII ACGT 4 cut(s) 387, 437, 863, 1065
MaeIII GTNAC 7 cut(s) 258, 518, 859, 876, 1174, 1384, 2106
MalI GATC 6 cut(s) 458, 828, 1403, 1559, 2199, 2223
MbiI CCGCTC 2 cut(s) 117, 362
MboI GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
MfeI CAATTG 2 cut(s) 1427, 1440
MflI RGATCY 1 cut(s) 2197
MhlI GDGCHC 1 cut(s) 630
MlsI TGGCCA 1 cut(s) 2070
MluNI TGGCCA 1 cut(s) 2070
MlyI GAGTC 6 cut(s) 365, 1459, 1866, 1926, 2037, 2505
MmeI TCCRAC 1 cut(s) 582
Mox20I TGGCCA 1 cut(s) 2070
Mph1103I ATGCAT 1 cut(s) 822
MroI TCCGGA 1 cut(s) 733
MroXI GAANNNNTTC 2 cut(s) 1265, 1622
MscI TGGCCA 1 cut(s) 2070
MslI CAYNNNNRTG 2 cut(s) 1473, 1631
Msp20I TGGCCA 1 cut(s) 2070
MspCI CTTAAG 1 cut(s) 2513
MspI CCGG 2 cut(s) 420, 734
MspR9I CCNGG 3 cut(s) 421, 500, 1790
MunI CAATTG 2 cut(s) 1427, 1440
Mva1269I GAATGC 3 cut(s) 81, 1764, 2247
MvaI CCWGG 2 cut(s) 500, 1790
MvnI CGCG 1 cut(s) 567
MwoI GCNNNNNNNGC 2 cut(s) 573, 1761
NciI CCSGG 1 cut(s) 421
NdeI CATATG 1 cut(s) 822
NdeII GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
NlaIII CATG 5 cut(s) 66, 1472, 1630, 1741, 2342
NlaIV GGNNCC 1 cut(s) 68
NmeAIII GCCGAG 1 cut(s) 718
NmuCI GTSAC 3 cut(s) 258, 518, 1384
NsiI ATGCAT 1 cut(s) 822
PacI TTAATTAA 2 cut(s) 957, 1998
PaeR7I CTCGAG 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PctI GAATGC 3 cut(s) 81, 1764, 2247
PdmI GAANNNNTTC 2 cut(s) 1265, 1622
PfeI GAWTC 5 cut(s) 246, 787, 1658, 2285, 2545
PkrI GCNGC 6 cut(s) 843, 846, 1299, 1347, 1480, 1953
PleI GAGTC 6 cut(s) 364, 1459, 1865, 1925, 2036, 2504
PpsI GAGTC 6 cut(s) 364, 1459, 1865, 1925, 2036, 2504
PshBI ATTAAT 2 cut(s) 957, 1994
PsiI TTATAA 1 cut(s) 1776
Psp1406I AACGTT 1 cut(s) 1065
Psp6I CCWGG 2 cut(s) 498, 1788
PspEI GGTNACC 1 cut(s) 1174
PspFI CCCAGC 3 cut(s) 581, 1595, 2532
PspGI CCWGG 2 cut(s) 498, 1788
PspN4I GGNNCC 1 cut(s) 68
PsrI GAACNNNNNNTAC 2 cut(s) 2174, 2206
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 1 cut(s) 2197
RsaI GTAC 6 cut(s) 401, 545, 775, 1186, 1876, 1895
RsaNI GTAC 6 cut(s) 400, 544, 774, 1185, 1875, 1894
RseI CAYNNNNRTG 2 cut(s) 1473, 1631
SatI GCNGC 6 cut(s) 842, 845, 1298, 1346, 1479, 1952
Sau3AI GATC 6 cut(s) 456, 826, 1401, 1557, 2197, 2221
ScaI AGTACT 1 cut(s) 1186
SchI GAGTC 6 cut(s) 365, 1459, 1866, 1926, 2037, 2505
ScrFI CCNGG 3 cut(s) 421, 500, 1790
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 8 cut(s) 147, 702, 1101, 1111, 1915, 2227, 2300, 2387
SfcI CTRYAG 4 cut(s) 777, 1180, 2136, 2242
Sfr274I CTCGAG 1 cut(s) 353
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 1473, 1631
SmlI CTYRAG 2 cut(s) 353, 2513
SmoI CTYRAG 2 cut(s) 353, 2513
SsiI CCGC 9 cut(s) 115, 136, 150, 220, 360, 567, 845, 1334, 1478
SspI AATATT 5 cut(s) 807, 1159, 1815, 1975, 1992
SspMI CTAG 1 cut(s) 801
StyD4I CCNGG 3 cut(s) 419, 498, 1788
TaaI ACNGT 4 cut(s) 1174, 1184, 1384, 1898
TaiI ACGT 4 cut(s) 390, 440, 866, 1068
TaqI TCGA 8 cut(s) 171, 354, 507, 659, 755, 1021, 1404, 2539
TatI WGTACW 6 cut(s) 399, 543, 773, 1184, 1874, 1893
TauI GCSGC 2 cut(s) 847, 1481
TfiI GAWTC 5 cut(s) 246, 787, 1658, 2285, 2545
TscAI CASTG 3 cut(s) 598, 1668, 2497
TseFI GTSAC 3 cut(s) 258, 518, 1384
TseI GCWGC 4 cut(s) 841, 1297, 1345, 1951
Tsp45I GTSAC 3 cut(s) 258, 518, 1384
TspDTI ATGAA 9 cut(s) 1370, 1615, 1623, 1854, 1859, 1959, 2279, 2364, 2589
TspGWI ACGGA 2 cut(s) 1106, 1212
TspRI CASTG 3 cut(s) 598, 1668, 2497
Vha464I CTTAAG 1 cut(s) 2513
VspI ATTAAT 2 cut(s) 957, 1994
XapI RAATTY 2 cut(s) 1498, 2576
XbaI TCTAGA 1 cut(s) 800
XhoI CTCGAG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 440
XmnI GAANNNNTTC 2 cut(s) 1265, 1622
XspI CTAG 1 cut(s) 801
ZrmI AGTACT 1 cut(s) 1186
Zsp2I ATGCAT 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.