Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

9189885 .. 9190577

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00391330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAATTTGATGGATTACTATAGAGGAAGAACATCAGAGGCGGAGGAACTGCTGCAAAAGGGCATATCTCCGAATATTTCTACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACATGAGTTATTTGACATTGCTTTAAGTGTATGTAGCCACAAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTCACAAAAGCTACAGAGCTATTTGAAGAAGCATTGGATAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTTATTGATAGACATTGCAAGGATCAAAAGTTGGAAGATGCCTGTAGCATTCTTCACAATATGATGAATAAGGGATACGGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTTGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTCGTGGAAAACCAAAGTCTTGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAATTGTATTGAAAACTCTTAAGAGGGTGAAGAAAGGCTGGGGTCGAGCGAATCTAACGAGTTTGCAAACCCAGAAAGATGAATTTCTTTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

230

Amino Acids

26.21

Weight (kDa)

6.54

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	330
AcsI	RAATTY	2 cut(s)	4, 677
AcuI	CTGAAG	1 cut(s)	70
AflII	CTTAAG	1 cut(s)	614
AgsI	TTSAA	2 cut(s)	251, 607
AluBI	AGCT	3 cut(s)	104, 236, 244
AluI	AGCT	3 cut(s)	104, 236, 244
AlwI	GGATC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	2 cut(s)	4, 677
AseI	ATTAAT	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	634
BbvI	GCAGC	1 cut(s)	39
BccI	CCATC	4 cut(s)	4, 407, 463, 581
BciVI	GTATCC	1 cut(s)	368
BfmI	CTRYAG	3 cut(s)	19, 237, 343
BfrI	CTTAAG	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	368
BglII	AGATCT	1 cut(s)	298
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmsI	GCATC	3 cut(s)	328, 401, 488
BpmI	CTGGAG	1 cut(s)	237
BsaXI	ACNNNNNCTCC	2 cut(s)	210, 240
Bse1I	ACTGG	1 cut(s)	404
Bse3DI	GCAATG	2 cut(s)	150, 313
BseGI	GGATG	1 cut(s)	392
BseMI	GCAATG	2 cut(s)	150, 313
BseNI	ACTGG	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	39
BseYI	CCCAGC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	348
Bsp143I	GATC	2 cut(s)	298, 322
BspACI	CCGC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	614
BsrDI	GCAATG	2 cut(s)	150, 313
BsrI	ACTGG	1 cut(s)	404
BssMI	GATC	2 cut(s)	298, 322
BstAFI	CTTAAG	1 cut(s)	614
BstF5I	GGATG	1 cut(s)	392
BstKTI	GATC	2 cut(s)	301, 325
BstMBI	GATC	2 cut(s)	298, 322
BstSFI	CTRYAG	3 cut(s)	19, 237, 343
BstV1I	GCAGC	1 cut(s)	39
BstX2I	RGATCY	1 cut(s)	298
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	1 cut(s)	598
CviAII	CATG	2 cut(s)	137, 440
CviJI	RGCY	8 cut(s)	104, 171, 182, 236, 244, 417, 446, 633
CviKI_1	RGCY	8 cut(s)	104, 171, 182, 236, 244, 417, 446, 633
DpnI	GATC	2 cut(s)	300, 324
DpnII	GATC	2 cut(s)	298, 322
EciI	GGCGGA	1 cut(s)	56
Eco57I	CTGAAG	1 cut(s)	70
FaeI	CATG	2 cut(s)	140, 443
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FatI	CATG	2 cut(s)	136, 439
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	1 cut(s)	379
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	637
GsuI	CTGGAG	1 cut(s)	237
Hin1II	CATG	2 cut(s)	140, 443
HindIII	AAGCTT	1 cut(s)	102
HinfI	GANTC	3 cut(s)	129, 386, 646
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	2 cut(s)	508, 577
Hpy188I	TCNGA	4 cut(s)	37, 72, 89, 484
Hpy8I	GTNNAC	2 cut(s)	508, 577
HpyAV	CCTTC	3 cut(s)	94, 406, 479
HpyCH4V	TGCA	5 cut(s)	55, 111, 318, 458, 661
Hsp92II	CATG	2 cut(s)	140, 443
Kzo9I	GATC	2 cut(s)	298, 322
LpnPI	CCDG	6 cut(s)	201, 263, 355, 417, 619, 680
Lsp1109I	GCAGC	1 cut(s)	39
LweI	GCATC	3 cut(s)	328, 401, 488
MaeIII	GTNAC	2 cut(s)	207, 226
MalI	GATC	2 cut(s)	300, 324
MboI	GATC	2 cut(s)	298, 322
MboII	GAAGA	5 cut(s)	39, 263, 344, 347, 637
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	6 cut(s)	4, 96, 408, 528, 597, 677
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	7 cut(s)	17, 31, 37, 212, 436, 513, 612
MseI	TTAA	5 cut(s)	95, 99, 158, 201, 615
MspCI	CTTAAG	1 cut(s)	614
Mva1269I	GAATGC	1 cut(s)	348
NdeII	GATC	2 cut(s)	298, 322
NlaIII	CATG	2 cut(s)	140, 443
NmuCI	GTSAC	1 cut(s)	226
PacI	TTAATTAA	1 cut(s)	99
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	386, 646
PkrI	GCNGC	1 cut(s)	54
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
PshBI	ATTAAT	1 cut(s)	95
PspFI	CCCAGC	1 cut(s)	633
PsrI	GAACNNNNNNTAC	2 cut(s)	275, 307
PsuI	RGATCY	1 cut(s)	298
SaqAI	TTAA	5 cut(s)	95, 99, 158, 201, 615
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	2 cut(s)	298, 322
SchI	GAGTC	1 cut(s)	138
SetI	ASST	6 cut(s)	86, 106, 238, 246, 490, 507
SfaNI	GCATC	3 cut(s)	328, 401, 488
SfcI	CTRYAG	3 cut(s)	19, 237, 343
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	6 cut(s)	4, 96, 408, 528, 597, 677
SsiI	CCGC	1 cut(s)	41
SspI	AATATT	2 cut(s)	76, 93
TaqI	TCGA	1 cut(s)	640
TasI	AATT	6 cut(s)	4, 96, 408, 528, 597, 677
TfiI	GAWTC	2 cut(s)	386, 646
Tru1I	TTAA	5 cut(s)	95, 99, 158, 201, 615
Tru9I	TTAA	5 cut(s)	95, 99, 158, 201, 615
TscAI	CASTG	1 cut(s)	598
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	52
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	4 cut(s)	17, 380, 465, 690
TspRI	CASTG	1 cut(s)	598
Vha464I	CTTAAG	1 cut(s)	614
VspI	ATTAAT	1 cut(s)	95
XapI	RAATTY	2 cut(s)	4, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.