Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042093.1

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1272

Gene Structure 1271 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042093.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1271 bp

atggaggaagcaacctcactcaccaaagctctactcaacaacaccaacaatcccaaactcgcatggcacctcttcaagcgcattctctcctcctcctcctcacatctctccctccgctccctcaccatcatagcccgcatcctcatctccgccaaaatgcaccccgaaatcgactccctccaccacctcctcctccactcacagcccccccaaaccctccgcccctgcctcgtttccctcgtgcgaatcttcgccaagtcacgcctcgccgacaagaccctttcgcattttaagtctctccgaagccacttccccaatgaccctccttctgtttatttgtataatctgcttctcgagtccgctctcagggagaacgatgtggattacgtgctgtggttgtacaaggatatgattgtttccggggttaagcccgaaacgtatacttttaatcttctgatccgtgcactgtgcgattgtggtcgtttggaagacgcacgccaggtgttcgataaaatgcgtgacaagggttgtcagccgaatgagtacagcgttgggattttggttcgcgggtattccagagctgggttgagcagtggagggttggaggttttggattgtggtgttgtgcccaatagggttgtgtataatactttggtttcgagtttttgtaaagaaggcaggactgatgaggccgagaaattggtggagaggatgcgagaggagggtatgcttccggatgtcattactttcaattcgaggatatcggctctctgtagtgcagggaagattcttgaagcgtctagaatatttagagatatgcatacggatcaggctttggggctgccgcaacccaatgttgtaacgtataatctgatgttacaaggattttgcaaggaagggatgttagaggaagcagagagcttgttcaaatctatggaaaaagctggtggtttaattaatatagagagctataatatatggttgttgggtttggtcaggaataagaagctcttggtggctcgactggttctgaaagagatggtagataagggaatagaacccaatgtttactcatataacattgtgataaatgggttatgcaaaaatgggatgctccgtgatgcaagaattgtgatgggtctgatggcaagaaacaatatttcgccagatacggttacctacagtactttactacacggatactgcaataaagggaaggtatttgaagccaacaatgttctgcaagagatgataacaaagaattgcttccc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

424

Amino Acids

47.76

Weight (kDa)

8.75

Isoelectric Point (pI)

42.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	66
AccBSI	CCGCTC	2 cut(s)	117, 362
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	733
AciI	CCGC	7 cut(s)	115, 136, 150, 220, 360, 567, 845
AclWI	GGATC	2 cut(s)	451, 834
AfaI	GTAC	3 cut(s)	401, 545, 1186
AfiI	CCNNNNNNNGG	2 cut(s)	366, 582
AgsI	TTSAA	5 cut(s)	76, 751, 794, 928, 1226
AjnI	CCWGG	1 cut(s)	498
AluBI	AGCT	6 cut(s)	29, 581, 921, 944, 969, 1009
AluI	AGCT	6 cut(s)	29, 581, 921, 944, 969, 1009
Alw21I	GWGCWC	1 cut(s)	466
Alw26I	GTCTC	1 cut(s)	300
Alw44I	GTGCAC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	451, 834
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	1 cut(s)	690
ApaLI	GTGCAC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	841
AseI	ATTAAT	1 cut(s)	957
Asp700I	GAANNNNTTC	1 cut(s)	1265
AspLEI	GCGC	1 cut(s)	81
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	13, 115
AvaI	CYCGRG	1 cut(s)	353
BaeGI	GKGCMC	2 cut(s)	466, 630
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	828
BccI	CCATC	4 cut(s)	134, 1033, 1129, 1138
BciT130I	CCWGG	1 cut(s)	500
BciVI	GTATCC	1 cut(s)	1193
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	2 cut(s)	772, 1180
BfuI	GTATCC	1 cut(s)	1193
BisI	GCNGC	2 cut(s)	842, 845
BlsI	GCNGC	2 cut(s)	843, 846
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	2 cut(s)	421, 500
BmeT110I	CYCGRG	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	421, 500
BmsI	GCATC	4 cut(s)	147, 702, 1101, 1111
BpiI	GAAGAC	1 cut(s)	495
BpuMI	CCSGG	1 cut(s)	421
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	733
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 582
Bse1I	ACTGG	1 cut(s)	1029
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	1 cut(s)	500
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	5 cut(s)	138, 717, 742, 906, 1116
BseLI	CCNNNNNNNGG	2 cut(s)	366, 582
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	1 cut(s)	1029
BseRI	GAGGAG	7 cut(s)	79, 82, 85, 88, 179, 182, 734
BseSI	GKGCMC	2 cut(s)	466, 630
BseXI	GCAGC	1 cut(s)	828
BseYI	CCCAGC	1 cut(s)	581
BsgI	GTGCAG	1 cut(s)	798
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	1 cut(s)	692
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	466
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	420, 734
BslI	CCNNNNNNNGG	2 cut(s)	366, 582
BsmAI	GTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	81
BsnI	GGCC	1 cut(s)	692
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	466, 630
Bsp13I	TCCGGA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	456, 826
BspACI	CCGC	7 cut(s)	115, 136, 150, 220, 360, 567, 845
BspANI	GGCC	1 cut(s)	692
BspCNI	CTCAG	1 cut(s)	378
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	68
BspPI	GGATC	2 cut(s)	451, 834
BspT107I	GGYRCC	1 cut(s)	66
BsrBI	CCGCTC	2 cut(s)	117, 362
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	1 cut(s)	1029
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	2 cut(s)	456, 826
BssNAI	GTATAC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	239
Bst1107I	GTATAC	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	500
Bst4CI	ACNGT	3 cut(s)	468, 1174, 1184
Bst6I	CTCTTC	1 cut(s)	77
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	136, 496
BstDEI	CTNAG	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	1174
BstF5I	GGATG	5 cut(s)	138, 717, 742, 906, 1116
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	2 cut(s)	459, 829
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	2 cut(s)	456, 826
BstNI	CCWGG	1 cut(s)	500
BstPI	GGTNACC	1 cut(s)	1174
BstSCI	CCNGG	2 cut(s)	419, 498
BstSFI	CTRYAG	2 cut(s)	772, 1180
BstSLI	GKGCMC	2 cut(s)	466, 630
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	1 cut(s)	828
BstV2I	GAAGAC	1 cut(s)	495
BstZ17I	GTATAC	1 cut(s)	441
BsuI	GTATCC	1 cut(s)	1193
BsuRI	GGCC	1 cut(s)	692
BtsCI	GGATG	5 cut(s)	138, 717, 742, 906, 1116
BtsI	GCAGTG	1 cut(s)	598
BtsIMutI	CAGTG	2 cut(s)	464, 598
Cac8I	GCNNGC	2 cut(s)	136, 496
CfoI	GCGC	1 cut(s)	81
CseI	GACGC	2 cut(s)	500, 786
Csp6I	GTAC	3 cut(s)	400, 544, 1185
CviAII	CATG	1 cut(s)	63
CviQI	GTAC	3 cut(s)	400, 544, 1185
DdeI	CTNAG	1 cut(s)	365
DpnI	GATC	2 cut(s)	458, 828
DpnII	GATC	2 cut(s)	456, 826
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	2 cut(s)	139, 209
Eco32I	GATATC	1 cut(s)	762
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	1174
EcoO65I	GGTNACC	1 cut(s)	1174
EcoRII	CCWGG	1 cut(s)	498
EcoRV	GATATC	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	822
FaeI	CATG	1 cut(s)	66
FalI	AAGNNNNNCTT	3 cut(s)	995, 1027, 1250
FatI	CATG	1 cut(s)	62
FauI	CCCGC	2 cut(s)	143, 560
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	2 cut(s)	842, 845
FokI	GGATG	5 cut(s)	125, 724, 749, 913, 1123
Fsp4HI	GCNGC	2 cut(s)	842, 845
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	2 cut(s)	842, 845
GsaI	CCCAGC	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	692
HapII	CCGG	2 cut(s)	420, 734
HgaI	GACGC	2 cut(s)	500, 786
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	4 cut(s)	173, 246, 356, 787
HpaII	CCGG	2 cut(s)	420, 734
HphI	GGTGA	2 cut(s)	13, 115
Hpy166II	GTNNAC	3 cut(s)	441, 464, 1069
Hpy188I	TCNGA	5 cut(s)	302, 456, 873, 1032, 1143
Hpy188III	TCNNGA	6 cut(s)	353, 576, 734, 791, 801, 997
Hpy8I	GTNNAC	3 cut(s)	441, 464, 1069
HpyAV	CCTTC	4 cut(s)	336, 668, 890, 1210
HpyCH4III	ACNGT	3 cut(s)	468, 1174, 1184
HpyCH4IV	ACGT	3 cut(s)	387, 437, 863
HpyCH4V	TGCA	9 cut(s)	160, 464, 779, 820, 891, 1101, 1124, 1206, 1243
HpyF3I	CTNAG	1 cut(s)	365
HpySE526I	ACGT	3 cut(s)	387, 437, 863
Hsp92II	CATG	1 cut(s)	66
HspAI	GCGC	1 cut(s)	79
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	2 cut(s)	456, 826
LmnI	GCTCC	2 cut(s)	122, 1119
Lsp1109I	GCAGC	1 cut(s)	828
LweI	GCATC	4 cut(s)	147, 702, 1101, 1111
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	3 cut(s)	387, 437, 863
MaeIII	GTNAC	5 cut(s)	258, 518, 859, 876, 1174
MalI	GATC	2 cut(s)	458, 828
MbiI	CCGCTC	2 cut(s)	117, 362
MboI	GATC	2 cut(s)	456, 826
MboII	GAAGA	5 cut(s)	64, 241, 443, 500, 796
MhlI	GDGCHC	2 cut(s)	466, 630
MluCI	AATT	5 cut(s)	698, 751, 954, 1128, 1261
MlyI	GAGTC	2 cut(s)	167, 365
MmeI	TCCRAC	1 cut(s)	582
Mph1103I	ATGCAT	1 cut(s)	822
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	1 cut(s)	1265
MseI	TTAA	5 cut(s)	291, 426, 447, 953, 957
MspI	CCGG	2 cut(s)	420, 734
MspR9I	CCNGG	2 cut(s)	421, 500
Mva1269I	GAATGC	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	500
MvnI	CGCG	1 cut(s)	567
NciI	CCSGG	1 cut(s)	421
NdeII	GATC	2 cut(s)	456, 826
NlaIII	CATG	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	258, 518
NsiI	ATGCAT	1 cut(s)	822
PacI	TTAATTAA	1 cut(s)	957
PaeR7I	CTCGAG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	1265
PfeI	GAWTC	2 cut(s)	246, 787
PkrI	GCNGC	2 cut(s)	843, 846
PleI	GAGTC	2 cut(s)	167, 364
PpsI	GAGTC	2 cut(s)	167, 364
Ppu21I	YACGTR	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	957
Psp6I	CCWGG	1 cut(s)	498
PspEI	GGTNACC	1 cut(s)	1174
PspFI	CCCAGC	1 cut(s)	581
PspGI	CCWGG	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	68
RsaI	GTAC	3 cut(s)	401, 545, 1186
RsaNI	GTAC	3 cut(s)	400, 544, 1185
SaqAI	TTAA	5 cut(s)	291, 426, 447, 953, 957
SatI	GCNGC	2 cut(s)	842, 845
Sau3AI	GATC	2 cut(s)	456, 826
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	2 cut(s)	167, 365
ScrFI	CCNGG	2 cut(s)	421, 500
SduI	GDGCHC	2 cut(s)	466, 630
SfaNI	GCATC	4 cut(s)	147, 702, 1101, 1111
SfcI	CTRYAG	2 cut(s)	772, 1180
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	5 cut(s)	698, 751, 954, 1128, 1261
SsiI	CCGC	7 cut(s)	115, 136, 150, 220, 360, 567, 845
SspI	AATATT	2 cut(s)	807, 1159
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	2 cut(s)	419, 498
TaaI	ACNGT	3 cut(s)	468, 1174, 1184
TaiI	ACGT	3 cut(s)	390, 440, 866
TaqI	TCGA	6 cut(s)	171, 354, 507, 659, 755, 1021
TasI	AATT	5 cut(s)	698, 751, 954, 1128, 1261
TatI	WGTACW	3 cut(s)	399, 543, 1184
TauI	GCSGC	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	246, 787
Tru1I	TTAA	5 cut(s)	291, 426, 447, 953, 957
Tru9I	TTAA	5 cut(s)	291, 426, 447, 953, 957
TscAI	CASTG	2 cut(s)	471, 598
TseFI	GTSAC	2 cut(s)	258, 518
TseI	GCWGC	1 cut(s)	841
Tsp45I	GTSAC	2 cut(s)	258, 518
TspGWI	ACGGA	4 cut(s)	449, 839, 1106, 1212
TspRI	CASTG	2 cut(s)	471, 598
VneI	GTGCAC	1 cut(s)	462
VspI	ATTAAT	1 cut(s)	957
XbaI	TCTAGA	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	1 cut(s)	1265
XspI	CTAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.