Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8435227.1

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Forward (+)

58 .. 1347

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8435227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

atgataacaaagaattgcttcccaaatactcatacttgcaacattctgctgcacagcctatggaaagagggaagaacatcagaagcggaggaactgctgcgaaagatgaatgagagaggttatggtttagatactgtgacctgcaacatcgtgatcgatggtctgtgcaatgatgggaaattggacaaagcaattgaaattgtaagtgggatgtggactcatggaagtgcggctcttggaaacttagggaattcctttgttggcctggttgatgatagtaataatgggaataaatgccttccagatttgatctcatattcaaccataattagtgggttatgcaaggctgggaggcttgatgaagctaagaagaagttcatggagatgatgggcaaaaacttgcaccctgattcagtgatttatgatacttttatgcatagcttttgtaaacaaggaaggatatcatctgcatttcgggtgttgaaggacatggagaagaaaggttgcaacaagagcattcaaacttataattcactaatcctgggcttagggagtaaaaagcaaatatttgaaatatatgggctgatggatgaaatgaaagagaggggagtccctcctgatgtctgtacttacaataatatgatgtactgtctctgtgaagtagagagagtcaaagatgcaacttctcttttagatgaaatgctgcaaaagggcatatccccgaatatttcaaccttcagaatattaattaaagctttctgcaagggttgtgattttggagtcgcacaggagttatttgacattgctttaagtgtatgtggccacaaggaagccttatatagtttgatgtttaatgagttacttgctggaggggaagttgcaaaagctacagagctatttgaagaagcattggacaagtatttttatctggggaacttcctttacaaagatctcattgatagactttgcaaggatcaaaagttagaggatgcctgtagcattcttcacaatatgatgaataagggatacgggtttgattcagcatccttcctaccagtaattgatggcttgggtaaaagggggaataagcatgaggctgatgaacttgcagagagaatgatggaaatggcatcagaaggtaggatagcaaataaggtttaccgaaatgagagggatataattggtggaaaaccaaagtctcgtggaagtgattggcagaccatagtgaacaggtatgatagaggaaaattacttataattcttttcttcttaacttctcttttggattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

429

Amino Acids

48.17

Weight (kDa)

6.13

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	528, 1256
Acc36I	ACCTGC	1 cut(s)	149
AciI	CCGC	2 cut(s)	86, 230
AclWI	GGATC	1 cut(s)	981
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	721
AfaI	GTAC	2 cut(s)	628, 647
AgsI	TTSAA	7 cut(s)	197, 321, 484, 521, 572, 732, 902
AjnI	CCWGG	2 cut(s)	264, 540
AluBI	AGCT	5 cut(s)	365, 441, 755, 887, 895
AluI	AGCT	5 cut(s)	365, 441, 755, 887, 895
Alw26I	GTCTC	2 cut(s)	656, 1203
AlwI	GGATC	1 cut(s)	981
AoxI	GGCC	2 cut(s)	262, 820
ApeKI	GCWGC	3 cut(s)	49, 97, 703
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	746
Asp700I	GAANNNNTTC	2 cut(s)	17, 374
BalI	TGGCCA	1 cut(s)	822
BauI	CACGAG	1 cut(s)	1200
BbvI	GCAGC	3 cut(s)	36, 84, 690
BccI	CCATC	6 cut(s)	152, 167, 382, 580, 1058, 1114
BciT130I	CCWGG	2 cut(s)	266, 542
BciVI	GTATCC	1 cut(s)	1019
BcoDI	GTCTC	2 cut(s)	656, 1203
BfmI	CTRYAG	2 cut(s)	888, 994
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	1019
BglII	AGATCT	1 cut(s)	949
BisI	GCNGC	4 cut(s)	50, 98, 231, 704
BlsI	GCNGC	4 cut(s)	51, 99, 232, 705
Bme1390I	CCNGG	2 cut(s)	266, 542
BmrFI	CCNGG	2 cut(s)	266, 542
BmsI	GCATC	4 cut(s)	667, 979, 1052, 1139
BpmI	CTGGAG	1 cut(s)	888
Bpu10I	CCTNAGC	1 cut(s)	547
Bsa29I	ATCGAT	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bse1I	ACTGG	1 cut(s)	1055
Bse3DI	GCAATG	2 cut(s)	175, 801
BseBI	CCWGG	2 cut(s)	266, 542
BseCI	ATCGAT	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	4 cut(s)	216, 595, 994, 1043
BseMI	GCAATG	2 cut(s)	175, 801
BseNI	ACTGG	1 cut(s)	1055
BseXI	GCAGC	3 cut(s)	36, 84, 690
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	264, 822
BshVI	ATCGAT	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	596
BsmAI	GTCTC	2 cut(s)	656, 1203
BsmFI	GGGAC	1 cut(s)	596
BsmI	GAATGC	2 cut(s)	516, 999
BsnI	GGCC	2 cut(s)	264, 822
Bsp143I	GATC	4 cut(s)	153, 309, 949, 973
BspACI	CCGC	2 cut(s)	86, 230
BspANI	GGCC	2 cut(s)	264, 822
BspDI	ATCGAT	1 cut(s)	156
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	981
BsrDI	GCAATG	2 cut(s)	175, 801
BsrI	ACTGG	1 cut(s)	1055
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	4 cut(s)	153, 309, 949, 973
BssSI	CACGAG	1 cut(s)	1200
Bst2BI	CACGAG	1 cut(s)	1200
Bst2UI	CCWGG	2 cut(s)	266, 542
Bst4CI	ACNGT	2 cut(s)	136, 650
BstDEI	CTNAG	3 cut(s)	244, 366, 547
BstF5I	GGATG	4 cut(s)	216, 595, 994, 1043
BstKTI	GATC	4 cut(s)	156, 312, 952, 976
BstMAI	GTCTC	2 cut(s)	656, 1203
BstMBI	GATC	4 cut(s)	153, 309, 949, 973
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	2 cut(s)	266, 542
BstSCI	CCNGG	2 cut(s)	264, 540
BstSFI	CTRYAG	2 cut(s)	888, 994
BstV1I	GCAGC	3 cut(s)	36, 84, 690
BstX2I	RGATCY	1 cut(s)	949
BstYI	RGATCY	1 cut(s)	949
Bsu15I	ATCGAT	1 cut(s)	156
BsuI	GTATCC	1 cut(s)	1019
BsuRI	GGCC	2 cut(s)	264, 822
BsuTUI	ATCGAT	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	216, 595, 994, 1043
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	149
ClaI	ATCGAT	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	627, 646
CviAII	CATG	4 cut(s)	221, 379, 490, 1091
CviQI	GTAC	2 cut(s)	627, 646
DdeI	CTNAG	3 cut(s)	244, 366, 547
DpnI	GATC	4 cut(s)	155, 311, 951, 975
DpnII	GATC	4 cut(s)	153, 309, 949, 973
EaeI	YGGCCR	1 cut(s)	820
Eco32I	GATATC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	721
EcoRI	GAATTC	1 cut(s)	250
EcoRII	CCWGG	2 cut(s)	264, 540
EcoRV	GATATC	1 cut(s)	462
EcoT22I	ATGCAT	1 cut(s)	438
FaeI	CATG	4 cut(s)	224, 382, 493, 1094
FalI	AAGNNNNNCTT	3 cut(s)	34, 818, 850
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	4 cut(s)	220, 378, 489, 1090
Fnu4HI	GCNGC	4 cut(s)	50, 98, 231, 704
FokI	GGATG	4 cut(s)	223, 602, 1001, 1030
Fsp4HI	GCNGC	4 cut(s)	50, 98, 231, 704
GluI	GCNGC	4 cut(s)	50, 98, 231, 704
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	888
HaeIII	GGCC	2 cut(s)	264, 822
Hin1II	CATG	4 cut(s)	224, 382, 493, 1094
HindIII	AAGCTT	1 cut(s)	753
HinfI	GANTC	6 cut(s)	217, 410, 609, 669, 780, 1037
Hpy166II	GTNNAC	4 cut(s)	216, 449, 1159, 1228
Hpy188I	TCNGA	3 cut(s)	82, 740, 1135
Hpy188III	TCNNGA	3 cut(s)	151, 302, 617
Hpy8I	GTNNAC	4 cut(s)	216, 449, 1159, 1228
HpyAV	CCTTC	6 cut(s)	308, 450, 478, 745, 1057, 1130
HpyCH4III	ACNGT	2 cut(s)	136, 650
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	3 cut(s)	244, 366, 547
Hsp92II	CATG	4 cut(s)	224, 382, 493, 1094
Kzo9I	GATC	4 cut(s)	153, 309, 949, 973
Lsp1109I	GCAGC	3 cut(s)	36, 84, 690
LweI	GCATC	4 cut(s)	667, 979, 1052, 1139
MaeIII	GTNAC	2 cut(s)	136, 858
MalI	GATC	4 cut(s)	155, 311, 951, 975
MboI	GATC	4 cut(s)	153, 309, 949, 973
MboII	GAAGA	6 cut(s)	84, 382, 508, 914, 995, 1258
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	949
MlsI	TGGCCA	1 cut(s)	822
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	4 cut(s)	211, 618, 678, 789
Mox20I	TGGCCA	1 cut(s)	822
Mph1103I	ATGCAT	1 cut(s)	438
MroXI	GAANNNNTTC	2 cut(s)	17, 374
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	6 cut(s)	746, 750, 809, 852, 1271, 1288
MslI	CAYNNNNRTG	2 cut(s)	225, 383
Msp20I	TGGCCA	1 cut(s)	822
MspR9I	CCNGG	2 cut(s)	266, 542
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	516, 999
MvaI	CCWGG	2 cut(s)	266, 542
MwoI	GCNNNNNNNGC	1 cut(s)	513
NdeII	GATC	4 cut(s)	153, 309, 949, 973
NlaIII	CATG	4 cut(s)	224, 382, 493, 1094
NmuCI	GTSAC	1 cut(s)	136
NsiI	ATGCAT	1 cut(s)	438
PacI	TTAATTAA	1 cut(s)	750
PctI	GAATGC	2 cut(s)	516, 999
PdmI	GAANNNNTTC	2 cut(s)	17, 374
PfeI	GAWTC	2 cut(s)	410, 1037
PkrI	GCNGC	4 cut(s)	51, 99, 232, 705
PleI	GAGTC	4 cut(s)	211, 617, 677, 788
PpsI	GAGTC	4 cut(s)	211, 617, 677, 788
PshBI	ATTAAT	1 cut(s)	746
PsiI	TTATAA	2 cut(s)	528, 1256
Psp6I	CCWGG	2 cut(s)	264, 540
PspFI	CCCAGC	1 cut(s)	347
PspGI	CCWGG	2 cut(s)	264, 540
PsrI	GAACNNNNNNTAC	2 cut(s)	926, 958
PsuI	RGATCY	1 cut(s)	949
RsaI	GTAC	2 cut(s)	628, 647
RsaNI	GTAC	2 cut(s)	627, 646
RseI	CAYNNNNRTG	2 cut(s)	225, 383
SaqAI	TTAA	6 cut(s)	746, 750, 809, 852, 1271, 1288
SatI	GCNGC	4 cut(s)	50, 98, 231, 704
Sau3AI	GATC	4 cut(s)	153, 309, 949, 973
SchI	GAGTC	4 cut(s)	211, 618, 678, 789
ScrFI	CCNGG	2 cut(s)	266, 542
SfaNI	GCATC	4 cut(s)	667, 979, 1052, 1139
SfcI	CTRYAG	2 cut(s)	888, 994
SmiMI	CAYNNNNRTG	2 cut(s)	225, 383
SsiI	CCGC	2 cut(s)	86, 230
SspI	AATATT	3 cut(s)	567, 727, 744
StyD4I	CCNGG	2 cut(s)	264, 540
TaaI	ACNGT	2 cut(s)	136, 650
TaqI	TCGA	1 cut(s)	156
TatI	WGTACW	2 cut(s)	626, 645
TauI	GCSGC	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	410, 1037
Tru1I	TTAA	6 cut(s)	746, 750, 809, 852, 1271, 1288
Tru9I	TTAA	6 cut(s)	746, 750, 809, 852, 1271, 1288
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	49, 97, 703
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	8 cut(s)	122, 367, 375, 606, 611, 711, 1031, 1116
TspRI	CASTG	1 cut(s)	420
VspI	ATTAAT	1 cut(s)	746
XapI	RAATTY	1 cut(s)	250
XmnI	GAANNNNTTC	2 cut(s)	17, 374
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.