Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

42618938 .. 42623566

Gene Structure 4629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2592 bp

ATGGACCAAGCAACCTCACTCACCAAAGCTCTACTCAACAACACCAACAATCCCAAACTCGCATGGCACCTCTTCAAGCGCATTCTTTCCTCCTCCTCCTCACATCTCTCCCTCCGCTCCCTCACCATCATAGCCCGCATCCTCATCTCCGCCAAAATGCACCCCGAAATCGACTCCCTCCACCACCTCCTCCTCCACTCACAGCCCCCCCAAACCCTCCGCCCCTGCCTCGTTTCCCTCGTCCGAATCTTCGCCAAGTCACGCCTCGCCGACAAGACCCTTTCGCATTTTAAGTCTCTCCGAAGCCACTTCCCCAATGACCCTCCTTCTGTTTATTTGTATAATCTGCTTCTCGAGTCCGCTCTCAGGGAGAACGATGTGGATTACGTGCTGTGGTTGTACAAGGATATGATTGTTTCCGGGGTCAAGCCCGAAACGTATACTTTTAATCTTCTGATCTGTGCGCTGTGCGATTGTGGTCGTTTGGAAGACGCACGCCAGGTGTTCGATAAAATGCGTGAGAAGGGTTGTCAGCCGAATGAGTACAGCGTTGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGTTGAGCAGTGGAGGGTTGGAGGTTTTGGATTGTGGTGTTGTGCCCAATAGGGTTGTGTATAATACTTTGGTTTCGAGTTTTTGTAAAGAAGGCAGGACTGATGAGGCCGAGAAATTGGTGGAAAGGATGCGAGAGGAGGGTATGTTTCCGGATGTCATTACTTTCAATTCGAGGATATCGGCTCTCTGTAGTGCGGGGAAGATTCTTGAAGCGTCTAGAATATTTAGAGATATGCATATGGATCAGGCTTTGGGGCTGCCGCAACCCAATGTTGTAACGTATAATCTGATGTTACAAGGATTTTGCAAGGAAGGGATGTTAGAGGAAGCAGAGAGCTTGTTCAAATCTATGGAAAAAGCTGGTGGTTTAATTAATATAGAGAGCTATAATCTATGGTTGTTGGGTTTGGTCAGGAATAAGAAGCTCTTGGAGGCTCGACTGGTTCTGAAAGAGATGGTAGATAAGGGAATAGAACCCAATGTTTACTCATATAACATTGTGATAAATGGGTTATGCAAAAATGGGATGCTCCGTGATGCAAGAATTGTGATGGGTCTGATGGCAAGAACCAATATTTCGCCAGATACGGTTACCTACAGTACTTTACTACACGGATACTGCAATAAAGGGAAGGTATTTGAAGCCAACAATGTTCTGCAAGAGATGATAACAAAGAATTGCTTCCCAAATACTCATACTTGCAACATTCTGCTGCACAGCCTATGGAAAGAGGGAAGAACATCAGAAGCGGAGGAACTGCTGCGAAAGATGAATGAGAGAGGTTATGGTTTAGATACTGTGACCTGCAACATCGTGATCGATGGTCTGTGCAATGATGGGAAATTGGACAAAGCAATTGAAATTGTAAGTGGGATGTGGACTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAATTCCTTTGTTGGCCTGGTTGATGATAGTAATAATGGGAATAAATGCCTTCCAGATTTGATCTCATATTCAACCATAATTAGTGGGTTATGCAAGGCTGGGAGGCTTGATGAAGCTAAGAAGAAGTTCATGGAGATGATGGGCAAAAACTTGCACCCTGATTCAGTGATTTATGATACTTTTATACATAGCTTTTGTAAACAAGGAAGGATATCATCTGCATTTCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAAACTTATAATTCACTAATCCTGGGCTTAGGGAGTAAAAAGCAAATATTTGAAATATATGGGCTGATGGATGAAATGAAAGAGAGGGGAGTCCCTCCTGATGTCTGTACTTACAATAATATGATGTACTGTCTCTGTGAAGTAGAGAGAGTCAAAGATGCAACTTCTCTTTTAGATGAAATGCTGCAAAAGGGCATATCCCCGAATATTTCAACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACAGGAGTTATTTGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTTGCAAAAGCTACAGAGCTATTTGAAGAAGCATTGGACAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTCATTGATAGACTTTGCAAGGATCAAAAGTTAGAGGATGCCTGTAGCATTCTTCACAATATGATGAATAAGGGATACGGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTTGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTGGTGGAAAACCAAAGTCTCGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAGTCGTATTGGAAACTCTTAAGAGGGTGCAGAAAGGCTGGGGTCGAGTGAATCTAACGAGTTTGCAAACCCAGAAAGATGAATTTCTTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

863

Amino Acids

96.97

Weight (kDa)

7.19

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	109 - 158	6.6e-09	PPR repeat family
PPR_3	PF13812	134 - 180	1.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	141 - 173	1.6e-10	PPR repeat
PPR_2	PF13041	144 - 193	2e-15	PPR repeat family
PPR	PF01535	147 - 177	6.9e-08	PPR repeat
PPR_3	PF13812	206 - 256	7.8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	207 - 239	3.9e-13	PPR repeat
PPR_2	PF13041	210 - 258	1e-13	PPR repeat family
PPR	PF01535	213 - 242	1.1e-08	PPR repeat
PPR_1	PF12854	242 - 273	3.4e-08	PPR repeat
PPR_1	PF12854	283 - 313	2.3e-11	PPR repeat
PPR_2	PF13041	284 - 325	1.5e-11	PPR repeat family
PPR	PF01535	287 - 316	7.2e-10	PPR repeat
PPR_long	PF17177	297 - 454	2.4e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	320 - 368	3.8e-13	PPR repeat family
PPR_1	PF12854	350 - 375	6e-10	PPR repeat
PPR_2	PF13041	354 - 403	1.1e-15	PPR repeat family
TPR_24	PF23276	378 - 483	1.3e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	382 - 434	3.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	386 - 417	4.6e-11	PPR repeat
PPR_2	PF13041	389 - 436	1.4e-14	PPR repeat family
PPR	PF01535	392 - 422	6.6e-07	PPR repeat
PPR_2	PF13041	424 - 473	6.1e-12	PPR repeat family
PPR_1	PF12854	456 - 487	6.1e-07	PPR repeat
PPR_1	PF12854	515 - 545	7.3e-12	PPR repeat
PPR_2	PF13041	517 - 555	6.4e-08	PPR repeat family
PPR	PF01535	520 - 549	9.2e-07	PPR repeat
PPR_3	PF13812	543 - 596	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	548 - 581	3.7e-10	PPR repeat
PPR_2	PF13041	552 - 599	2.6e-13	PPR repeat family
PPR_long	PF17177	569 - 670	2.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	588 - 635	5e-12	PPR repeat family
PPR_3	PF13812	611 - 669	5.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	618 - 650	4.9e-08	PPR repeat
PPR_2	PF13041	622 - 671	1.6e-16	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1776
Acc36I	ACCTGC	1 cut(s)	1397
AccB1I	GGYRCC	1 cut(s)	66
AccBSI	CCGCTC	2 cut(s)	117, 362
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	567
AccIII	TCCGGA	1 cut(s)	733
AclWI	GGATC	2 cut(s)	834, 2229
AcoI	YGGCCR	1 cut(s)	2068
AcsI	RAATTY	2 cut(s)	1498, 2576
AcuI	CTGAAG	1 cut(s)	1969
AfaI	GTAC	5 cut(s)	401, 545, 1186, 1876, 1895
AfiI	CCNNNNNNNGG	1 cut(s)	366
AflII	CTTAAG	1 cut(s)	2513
AjnI	CCWGG	3 cut(s)	498, 1512, 1788
Alw26I	GTCTC	3 cut(s)	300, 1904, 2451
AlwI	GGATC	2 cut(s)	834, 2229
Ama87I	CYCGRG	1 cut(s)	353
Aor13HI	TCCGGA	1 cut(s)	733
AoxI	GGCC	3 cut(s)	690, 1510, 2068
ApeKI	GCWGC	4 cut(s)	841, 1297, 1345, 1951
ApoI	RAATTY	2 cut(s)	1498, 2576
AseI	ATTAAT	2 cut(s)	957, 1994
Asp700I	GAANNNNTTC	2 cut(s)	1265, 1622
AspLEI	GCGC	2 cut(s)	81, 466
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	421
AsuHPI	GGTGA	2 cut(s)	13, 115
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	630
BalI	TGGCCA	1 cut(s)	2070
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	2448
BbsI	GAAGAC	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	828, 1284, 1332, 1938
BcgI	CGANNNNNNTGC	2 cut(s)	2479, 2513
BciT130I	CCWGG	3 cut(s)	500, 1514, 1790
BciVI	GTATCC	2 cut(s)	1193, 2267
BcnI	CCSGG	1 cut(s)	421
BcoDI	GTCTC	3 cut(s)	300, 1904, 2451
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	4 cut(s)	772, 1180, 2136, 2242
BfrI	CTTAAG	1 cut(s)	2513
BfuAI	ACCTGC	1 cut(s)	1397
BfuI	GTATCC	2 cut(s)	1193, 2267
BglII	AGATCT	1 cut(s)	2197
BisI	GCNGC	6 cut(s)	842, 845, 1298, 1346, 1479, 1952
BlsI	GCNGC	6 cut(s)	843, 846, 1299, 1347, 1480, 1953
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	4 cut(s)	421, 500, 1514, 1790
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	4 cut(s)	421, 500, 1514, 1790
BmsI	GCATC	8 cut(s)	147, 702, 1101, 1111, 1915, 2227, 2300, 2387
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	2136
Bpu10I	CCTNAGC	1 cut(s)	1795
BpuMI	CCSGG	1 cut(s)	421
Bsa29I	ATCGAT	1 cut(s)	1404
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	2 cut(s)	420, 1789
BsaWI	WCCGGW	1 cut(s)	733
BsaXI	ACNNNNNCTCC	4 cut(s)	713, 743, 2109, 2139
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	2 cut(s)	1029, 2303
Bse3DI	GCAATG	2 cut(s)	1423, 2049
BseAI	TCCGGA	1 cut(s)	733
BseBI	CCWGG	3 cut(s)	500, 1514, 1790
BseCI	ATCGAT	1 cut(s)	1404
BseDI	CCNNGG	2 cut(s)	420, 1789
BseGI	GGATG	9 cut(s)	138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMI	GCAATG	2 cut(s)	1423, 2049
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	2 cut(s)	1029, 2303
BseRI	GAGGAG	6 cut(s)	82, 85, 88, 179, 182, 734
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	4 cut(s)	828, 1284, 1332, 1938
BseYI	CCCAGC	3 cut(s)	581, 1595, 2532
BsgI	GTGCAG	2 cut(s)	1283, 2543
Bsh1236I	CGCG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	692, 1512, 2070
BshNI	GGYRCC	1 cut(s)	66
BshVI	ATCGAT	1 cut(s)	1404
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	2 cut(s)	420, 734
BslFI	GGGAC	1 cut(s)	1844
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	3 cut(s)	300, 1904, 2451
BsmFI	GGGAC	1 cut(s)	1844
BsmI	GAATGC	3 cut(s)	81, 1764, 2247
BsnI	GGCC	3 cut(s)	692, 1512, 2070
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	630
Bsp13I	TCCGGA	1 cut(s)	733
Bsp1407I	TGTACA	1 cut(s)	399
Bsp143I	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
BspANI	GGCC	3 cut(s)	692, 1512, 2070
BspCNI	CTCAG	1 cut(s)	378
BspDI	ATCGAT	1 cut(s)	1404
BspEI	TCCGGA	1 cut(s)	733
BspFNI	CGCG	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	68
BspMI	ACCTGC	1 cut(s)	1397
BspPI	GGATC	2 cut(s)	834, 2229
BspT107I	GGYRCC	1 cut(s)	66
BspTI	CTTAAG	1 cut(s)	2513
BsrBI	CCGCTC	2 cut(s)	117, 362
BsrDI	GCAATG	2 cut(s)	1423, 2049
BsrGI	TGTACA	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	1029, 2303
BssECI	CCNNGG	2 cut(s)	420, 1789
BssMI	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
BssNAI	GTATAC	1 cut(s)	441
BssSI	CACGAG	1 cut(s)	2448
Bst1107I	GTATAC	1 cut(s)	441
Bst2BI	CACGAG	1 cut(s)	2448
Bst2UI	CCWGG	3 cut(s)	500, 1514, 1790
Bst4CI	ACNGT	4 cut(s)	1174, 1184, 1384, 1898
Bst6I	CTCTTC	1 cut(s)	77
BstAFI	CTTAAG	1 cut(s)	2513
BstAUI	TGTACA	1 cut(s)	399
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	2 cut(s)	136, 496
BstDEI	CTNAG	4 cut(s)	365, 1492, 1614, 1795
BstEII	GGTNACC	1 cut(s)	1174
BstF5I	GGATG	9 cut(s)	138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BstFNI	CGCG	1 cut(s)	567
BstHHI	GCGC	2 cut(s)	81, 466
BstKTI	GATC	6 cut(s)	459, 829, 1404, 1560, 2200, 2224
BstMAI	GTCTC	3 cut(s)	300, 1904, 2451
BstMBI	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
BstMWI	GCNNNNNNNGC	2 cut(s)	573, 1761
BstNI	CCWGG	3 cut(s)	500, 1514, 1790
BstPI	GGTNACC	1 cut(s)	1174
BstSCI	CCNGG	4 cut(s)	419, 498, 1512, 1788
BstSFI	CTRYAG	4 cut(s)	772, 1180, 2136, 2242
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	567
BstV1I	GCAGC	4 cut(s)	828, 1284, 1332, 1938
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	1 cut(s)	2197
BstYI	RGATCY	1 cut(s)	2197
BstZ17I	GTATAC	1 cut(s)	441
Bsu15I	ATCGAT	1 cut(s)	1404
BsuI	GTATCC	2 cut(s)	1193, 2267
BsuRI	GGCC	3 cut(s)	692, 1512, 2070
BsuTUI	ATCGAT	1 cut(s)	1404
BtsCI	GGATG	9 cut(s)	138, 717, 742, 906, 1116, 1464, 1843, 2242, 2291
BtsI	GCAGTG	2 cut(s)	598, 2497
BtsIMutI	CAGTG	3 cut(s)	598, 1668, 2497
BveI	ACCTGC	1 cut(s)	1397
Cac8I	GCNNGC	2 cut(s)	136, 496
CfoI	GCGC	2 cut(s)	81, 466
Cfr13I	GGNCC	1 cut(s)	4
ClaI	ATCGAT	1 cut(s)	1404
CseI	GACGC	2 cut(s)	500, 786
Csp6I	GTAC	5 cut(s)	400, 544, 1185, 1875, 1894
CviAII	CATG	5 cut(s)	63, 1469, 1627, 1738, 2339
CviQI	GTAC	5 cut(s)	400, 544, 1185, 1875, 1894
DdeI	CTNAG	4 cut(s)	365, 1492, 1614, 1795
DpnI	GATC	6 cut(s)	458, 828, 1403, 1559, 2199, 2223
DpnII	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
EaeI	YGGCCR	1 cut(s)	2068
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	2 cut(s)	139, 209
Eco32I	GATATC	2 cut(s)	762, 1710
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	1969
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	1174
EcoO65I	GGTNACC	1 cut(s)	1174
EcoRI	GAATTC	1 cut(s)	1498
EcoRII	CCWGG	3 cut(s)	498, 1512, 1788
EcoRV	GATATC	2 cut(s)	762, 1710
EcoT22I	ATGCAT	1 cut(s)	822
FaeI	CATG	5 cut(s)	66, 1472, 1630, 1741, 2342
FalI	AAGNNNNNCTT	6 cut(s)	995, 1027, 1250, 1282, 2066, 2098
FaqI	GGGAC	1 cut(s)	1844
FatI	CATG	5 cut(s)	62, 1468, 1626, 1737, 2338
FauI	CCCGC	3 cut(s)	143, 560, 772
FauNDI	CATATG	1 cut(s)	822
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	6 cut(s)	842, 845, 1298, 1346, 1479, 1952
FokI	GGATG	9 cut(s)	125, 724, 749, 913, 1123, 1471, 1850, 2249, 2278
Fsp4HI	GCNGC	6 cut(s)	842, 845, 1298, 1346, 1479, 1952
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	2 cut(s)	80, 465
GluI	GCNGC	6 cut(s)	842, 845, 1298, 1346, 1479, 1952
GsaI	CCCAGC	3 cut(s)	585, 1599, 2536
GsuI	CTGGAG	1 cut(s)	2136
HaeIII	GGCC	3 cut(s)	692, 1512, 2070
HapII	CCGG	2 cut(s)	420, 734
HgaI	GACGC	2 cut(s)	500, 786
HhaI	GCGC	2 cut(s)	81, 466
Hin1II	CATG	5 cut(s)	66, 1472, 1630, 1741, 2342
Hin6I	GCGC	2 cut(s)	79, 464
HinP1I	GCGC	2 cut(s)	79, 464
HindIII	AAGCTT	1 cut(s)	2001
HpaII	CCGG	2 cut(s)	420, 734
HphI	GGTGA	2 cut(s)	13, 115
Hpy166II	GTNNAC	6 cut(s)	441, 1069, 1464, 1697, 2407, 2476
Hpy188I	TCNGA	9 cut(s)	245, 302, 456, 873, 1032, 1143, 1330, 1988, 2383
Hpy188III	TCNNGA	9 cut(s)	353, 734, 791, 801, 997, 1399, 1550, 1865, 2582
Hpy8I	GTNNAC	6 cut(s)	441, 1069, 1464, 1697, 2407, 2476
HpyCH4III	ACNGT	4 cut(s)	1174, 1184, 1384, 1898
HpyCH4IV	ACGT	3 cut(s)	387, 437, 863
HpyF10VI	GCNNNNNNNGC	2 cut(s)	573, 1761
HpyF3I	CTNAG	4 cut(s)	365, 1492, 1614, 1795
HpySE526I	ACGT	3 cut(s)	387, 437, 863
Hsp92II	CATG	5 cut(s)	66, 1472, 1630, 1741, 2342
HspAI	GCGC	2 cut(s)	79, 464
Kpn2I	TCCGGA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
LmnI	GCTCC	2 cut(s)	122, 1119
Lsp1109I	GCAGC	4 cut(s)	828, 1284, 1332, 1938
LweI	GCATC	8 cut(s)	147, 702, 1101, 1111, 1915, 2227, 2300, 2387
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	3 cut(s)	387, 437, 863
MaeIII	GTNAC	6 cut(s)	258, 859, 876, 1174, 1384, 2106
MalI	GATC	6 cut(s)	458, 828, 1403, 1559, 2199, 2223
MbiI	CCGCTC	2 cut(s)	117, 362
MboI	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
MfeI	CAATTG	1 cut(s)	1440
MflI	RGATCY	1 cut(s)	2197
MhlI	GDGCHC	1 cut(s)	630
MlsI	TGGCCA	1 cut(s)	2070
MluNI	TGGCCA	1 cut(s)	2070
MlyI	GAGTC	7 cut(s)	167, 365, 1459, 1866, 1926, 2037, 2505
MmeI	TCCRAC	1 cut(s)	582
Mox20I	TGGCCA	1 cut(s)	2070
Mph1103I	ATGCAT	1 cut(s)	822
MroI	TCCGGA	1 cut(s)	733
MroXI	GAANNNNTTC	2 cut(s)	1265, 1622
MscI	TGGCCA	1 cut(s)	2070
MseI	TTAA	9 cut(s)	291, 447, 953, 957, 1994, 1998, 2057, 2100, 2514
MslI	CAYNNNNRTG	2 cut(s)	1473, 1631
Msp20I	TGGCCA	1 cut(s)	2070
MspCI	CTTAAG	1 cut(s)	2513
MspI	CCGG	2 cut(s)	420, 734
MspR9I	CCNGG	4 cut(s)	421, 500, 1514, 1790
MunI	CAATTG	1 cut(s)	1440
Mva1269I	GAATGC	3 cut(s)	81, 1764, 2247
MvaI	CCWGG	3 cut(s)	500, 1514, 1790
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	573, 1761
NciI	CCSGG	1 cut(s)	421
NdeI	CATATG	1 cut(s)	822
NdeII	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
NlaIII	CATG	5 cut(s)	66, 1472, 1630, 1741, 2342
NlaIV	GGNNCC	1 cut(s)	68
NmeAIII	GCCGAG	1 cut(s)	718
NmuCI	GTSAC	2 cut(s)	258, 1384
NsiI	ATGCAT	1 cut(s)	822
PacI	TTAATTAA	2 cut(s)	957, 1998
PaeR7I	CTCGAG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PctI	GAATGC	3 cut(s)	81, 1764, 2247
PdmI	GAANNNNTTC	2 cut(s)	1265, 1622
PfeI	GAWTC	5 cut(s)	246, 787, 1658, 2285, 2545
PkrI	GCNGC	6 cut(s)	843, 846, 1299, 1347, 1480, 1953
PleI	GAGTC	7 cut(s)	167, 364, 1459, 1865, 1925, 2036, 2504
PpsI	GAGTC	7 cut(s)	167, 364, 1459, 1865, 1925, 2036, 2504
Ppu21I	YACGTR	1 cut(s)	388
PshBI	ATTAAT	2 cut(s)	957, 1994
PsiI	TTATAA	1 cut(s)	1776
Psp6I	CCWGG	3 cut(s)	498, 1512, 1788
PspEI	GGTNACC	1 cut(s)	1174
PspFI	CCCAGC	3 cut(s)	581, 1595, 2532
PspGI	CCWGG	3 cut(s)	498, 1512, 1788
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	4
PsrI	GAACNNNNNNTAC	2 cut(s)	2174, 2206
PsuI	RGATCY	1 cut(s)	2197
RsaI	GTAC	5 cut(s)	401, 545, 1186, 1876, 1895
RsaNI	GTAC	5 cut(s)	400, 544, 1185, 1875, 1894
RseI	CAYNNNNRTG	2 cut(s)	1473, 1631
SaqAI	TTAA	9 cut(s)	291, 447, 953, 957, 1994, 1998, 2057, 2100, 2514
SatI	GCNGC	6 cut(s)	842, 845, 1298, 1346, 1479, 1952
Sau3AI	GATC	6 cut(s)	456, 826, 1401, 1557, 2197, 2221
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	7 cut(s)	167, 365, 1459, 1866, 1926, 2037, 2505
ScrFI	CCNGG	4 cut(s)	421, 500, 1514, 1790
SduI	GDGCHC	1 cut(s)	630
SfaNI	GCATC	8 cut(s)	147, 702, 1101, 1111, 1915, 2227, 2300, 2387
SfcI	CTRYAG	4 cut(s)	772, 1180, 2136, 2242
Sfr274I	CTCGAG	1 cut(s)	353
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	1473, 1631
SmlI	CTYRAG	2 cut(s)	353, 2513
SmoI	CTYRAG	2 cut(s)	353, 2513
SspI	AATATT	5 cut(s)	807, 1159, 1815, 1975, 1992
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	4 cut(s)	419, 498, 1512, 1788
TaaI	ACNGT	4 cut(s)	1174, 1184, 1384, 1898
TaiI	ACGT	3 cut(s)	390, 440, 866
TaqI	TCGA	8 cut(s)	171, 354, 507, 659, 755, 1021, 1404, 2539
TatI	WGTACW	5 cut(s)	399, 543, 1184, 1874, 1893
TauI	GCSGC	2 cut(s)	847, 1481
TfiI	GAWTC	5 cut(s)	246, 787, 1658, 2285, 2545
Tru1I	TTAA	9 cut(s)	291, 447, 953, 957, 1994, 1998, 2057, 2100, 2514
Tru9I	TTAA	9 cut(s)	291, 447, 953, 957, 1994, 1998, 2057, 2100, 2514
TscAI	CASTG	3 cut(s)	598, 1668, 2497
TseFI	GTSAC	2 cut(s)	258, 1384
TseI	GCWGC	4 cut(s)	841, 1297, 1345, 1951
Tsp45I	GTSAC	2 cut(s)	258, 1384
TspDTI	ATGAA	9 cut(s)	1370, 1615, 1623, 1854, 1859, 1959, 2279, 2364, 2589
TspGWI	ACGGA	2 cut(s)	1106, 1212
TspRI	CASTG	3 cut(s)	598, 1668, 2497
Vha464I	CTTAAG	1 cut(s)	2513
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	2 cut(s)	957, 1994
XapI	RAATTY	2 cut(s)	1498, 2576
XbaI	TCTAGA	1 cut(s)	800
XhoI	CTCGAG	1 cut(s)	353
XmiI	GTMKAC	1 cut(s)	440
XmnI	GAANNNNTTC	2 cut(s)	1265, 1622
XspI	CTAG	1 cut(s)	801
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	1 cut(s)	822

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.