Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

63151168 .. 63152855

Gene Structure 1688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00044300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGATGTACTGTCTCTGTGAAGTAGAGAGAGTCAAAGATGCAACTTCTCTTTTAGATGAAATGCTGCAAAAGGGCATATCTCCTAATATTTCTACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACAGGAGTTATTTGACATTGCTTTAAGTGTATGTGGCCACCAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTCGCAAAAGCTACAGAGCTATTTGAAGAAGCATTGGACAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTTATTGATAGACATTGCAAGGATCAAAAGTTGGAAGATGCCTGTAGCATTCTTCACAATATGATGAATAAGGAATACGGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTTGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTCGTGGAAAACCAAAGTCTTGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAATTGTATTGAAAACTCTTAAGAGGGTGCAGAAAGGCTGGGGTCGAGCGAATCTAACGAGTTTGCAAACCCAGAAAGATGAATTTCTTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

234

Amino Acids

26.57

Weight (kDa)

5.38

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	1 - 42	1.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	342
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	689
AcuI	CTGAAG	1 cut(s)	82
AfaI	GTAC	1 cut(s)	8
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	2 cut(s)	263, 619
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	3 cut(s)	116, 248, 256
AluI	AGCT	3 cut(s)	116, 248, 256
Alw26I	GTCTC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	342
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	1 cut(s)	689
AseI	ATTAAT	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	51
BccI	CCATC	3 cut(s)	419, 475, 593
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	249, 355
BfrI	CTTAAG	1 cut(s)	626
BglII	AGATCT	1 cut(s)	310
BisI	GCNGC	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	66
Bme1390I	CCNGG	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	4 cut(s)	28, 340, 413, 500
BpmI	CTGGAG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	2 cut(s)	162, 325
BseBI	CCWGG	1 cut(s)	188
BseGI	GGATG	1 cut(s)	404
BseMI	GCAATG	2 cut(s)	162, 325
BseNI	ACTGG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	645
BsgI	GTGCAG	1 cut(s)	656
BshFI	GGCC	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	17
BsmI	GAATGC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	2 cut(s)	310, 334
BspANI	GGCC	1 cut(s)	183
BspPI	GGATC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	162, 325
BsrI	ACTGG	1 cut(s)	416
BssMI	GATC	2 cut(s)	310, 334
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	11
BstAFI	CTTAAG	1 cut(s)	626
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	2 cut(s)	313, 337
BstMAI	GTCTC	1 cut(s)	17
BstMBI	GATC	2 cut(s)	310, 334
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	249, 355
BstV1I	GCAGC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	404
BtsI	GCAGTG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	610
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	452
CviJI	RGCY	8 cut(s)	116, 183, 194, 248, 256, 429, 458, 645
CviKI_1	RGCY	8 cut(s)	116, 183, 194, 248, 256, 429, 458, 645
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	2 cut(s)	312, 336
DpnII	GATC	2 cut(s)	310, 334
EaeI	YGGCCR	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	186
FaeI	CATG	1 cut(s)	455
FaiI	YATR	8 cut(s)	77, 178, 199, 201, 374, 453, 539, 584
FatI	CATG	1 cut(s)	451
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	1 cut(s)	65
GluI	GCNGC	1 cut(s)	65
GsaI	CCCAGC	1 cut(s)	649
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	455
HindIII	AAGCTT	1 cut(s)	114
HinfI	GANTC	4 cut(s)	30, 141, 398, 658
Hpy166II	GTNNAC	2 cut(s)	520, 589
Hpy188I	TCNGA	2 cut(s)	101, 496
Hpy188III	TCNNGA	1 cut(s)	695
Hpy8I	GTNNAC	2 cut(s)	520, 589
HpyAV	CCTTC	3 cut(s)	106, 418, 491
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4V	TGCA	7 cut(s)	41, 67, 123, 330, 470, 637, 673
Hsp92II	CATG	1 cut(s)	455
Kzo9I	GATC	2 cut(s)	310, 334
LpnPI	CCDG	9 cut(s)	134, 173, 200, 213, 275, 367, 429, 631, 692
Lsp1109I	GCAGC	1 cut(s)	51
LweI	GCATC	4 cut(s)	28, 340, 413, 500
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	2 cut(s)	312, 336
MboI	GATC	2 cut(s)	310, 334
MboII	GAAGA	3 cut(s)	275, 356, 359
MflI	RGATCY	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	5 cut(s)	108, 420, 540, 609, 689
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	2 cut(s)	39, 150
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	4 cut(s)	224, 448, 525, 624
Mox20I	TGGCCA	1 cut(s)	183
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	5 cut(s)	107, 111, 170, 213, 627
Msp20I	TGGCCA	1 cut(s)	183
MspCI	CTTAAG	1 cut(s)	626
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	188
NdeII	GATC	2 cut(s)	310, 334
NlaIII	CATG	1 cut(s)	455
PacI	TTAATTAA	1 cut(s)	111
PctI	GAATGC	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	398, 658
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	38, 149
PpsI	GAGTC	2 cut(s)	38, 149
PshBI	ATTAAT	1 cut(s)	107
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	186
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	5 cut(s)	107, 111, 170, 213, 627
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	2 cut(s)	310, 334
SchI	GAGTC	2 cut(s)	39, 150
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	6 cut(s)	98, 118, 250, 258, 502, 519
SfaNI	GCATC	4 cut(s)	28, 340, 413, 500
SfcI	CTRYAG	2 cut(s)	249, 355
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	5 cut(s)	108, 420, 540, 609, 689
SspI	AATATT	2 cut(s)	88, 105
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	1 cut(s)	11
TaqI	TCGA	1 cut(s)	652
TasI	AATT	5 cut(s)	108, 420, 540, 609, 689
TatI	WGTACW	1 cut(s)	6
TfiI	GAWTC	2 cut(s)	398, 658
Tru1I	TTAA	5 cut(s)	107, 111, 170, 213, 627
Tru9I	TTAA	5 cut(s)	107, 111, 170, 213, 627
TscAI	CASTG	1 cut(s)	610
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	4 cut(s)	72, 392, 477, 702
TspRI	CASTG	1 cut(s)	610
Vha464I	CTTAAG	1 cut(s)	626
VspI	ATTAAT	1 cut(s)	107
XapI	RAATTY	1 cut(s)	689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.