Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

16719529 .. 16720939

Gene Structure 1411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13140.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGCATATAGATGATCAAGAGTTGGGGCTGTCTCAACCTAATGTTGTAACATATAATTTGACGTTGCAAGGATGGGATGTTAGGGGAAGCAGAGGCATTGATCAAATCTATGGAAAGGAGATGGTAGATGAAGGCATAGAACCCAGTATTTACTCTTACATCATTGTGATAAATGGGTTATGCAAAACCGGGATGCTCCGTGATGCAAGAACGGTGATGAGTCTAATGGAAAGAAATAATATTTCCCCAGATACGGTGACGTACAGTACTTTACTTCACGGTTTCTGCAGTAAAGGTAAGAGCCTTTGGAAGGAGGGAAGGACATCAGAAGCAGAGGAGCTTCTGAAAAAGATGAATGAGAGAGGTTATGGCTTAGATACTGTGATCTGCAATATTGTAATTGATGGTCTATGCAATGATGGGAAATTGGACAAAGCAATGGAAATTGTGAGTGGGATGTGGACTCATGGAAGTGTGGCTCTTGGAAACATAGGGAACTCATTTTTTGGCCTGGTTGACGATAGTAATAATGGGAAGAATTGCATCCCTGATTTGATAACGTATTCAACCATAATTGGTGGGTTATGCAAGGCTGGGAGGCTTGATGAAGCGAAGAAGAAGTTCATGGAGATGTTGGGGAAAAGCTTGCACCCTGATTCAGTGATTTATGATATGTTTATACGAAGTTTTTGTGAACAAGGAAAGATATCATCTGCATTTCGGGTGTTGAAGGACATGGAGAAAAATGGTTGCAACAAGAGTATTCAAACTTATAATTCACTAATCCTAGGATTAGGGAGGAAAAGGCAAAATTTTGAAATATACGGACTGATGGATGAGATGAGAGAAAGAGGAGTTCCTCCTGATGTATTCACTTATAATAACATGATGAAAAGTCTCTGTGAAGGAGAGAGAGTCAGAGATGCCACTTCTCTTTTAGATGAAATGCTGCAGAAAGGCATATCCCCGAATATATCTTCCCTCAGAATATTGATTGAAGCTTTCGCTAAGGGATGTGATTTTGGAGCCGTGCATGAGGTATTCAACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCCTTGTATAGTTTGATGTTTAATGAGTTGCTCGCTGGAGGGGAAATATGGAGTGCTAAAGAGCTATTTGAAATTGCATTGGACAGGTATTTTTATCTGGGGAATTTTAACTACAATGATCGATCATTGACAGACTTTGCAAGGATGAAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

411

Amino Acids

45.96

Weight (kDa)

5.47

Isoelectric Point (pI)

30.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	774, 879
AcoI	YGGCCR	1 cut(s)	1066
AcsI	RAATTY	2 cut(s)	811, 1180
AfaI	GTAC	2 cut(s)	263, 268
AfiI	CCNNNNNNNGG	2 cut(s)	253, 310
AgsI	TTSAA	7 cut(s)	567, 730, 767, 818, 998, 1045, 1148
AjnI	CCWGG	1 cut(s)	510
AluBI	AGCT	4 cut(s)	340, 645, 1001, 1141
AluI	AGCT	4 cut(s)	340, 645, 1001, 1141
Alw26I	GTCTC	2 cut(s)	36, 902
AoxI	GGCC	2 cut(s)	508, 1066
ApeKI	GCWGC	1 cut(s)	949
ApoI	RAATTY	2 cut(s)	811, 1180
Asp700I	GAANNNNTTC	1 cut(s)	620
AspA2I	CCTAGG	1 cut(s)	787
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	2 cut(s)	226, 268
AvrII	CCTAGG	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	1068
BbvI	GCAGC	1 cut(s)	936
BccI	CCATC	5 cut(s)	66, 115, 398, 413, 826
BceAI	ACGGC	1 cut(s)	1013
BciT130I	CCWGG	1 cut(s)	512
BclI	TGATCA	2 cut(s)	13, 100
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	2 cut(s)	36, 902
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	2 cut(s)	286, 950
BisI	GCNGC	1 cut(s)	950
BlnI	CCTAGG	1 cut(s)	787
BlsI	GCNGC	1 cut(s)	951
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	2 cut(s)	190, 512
BmiI	GGNNCC	1 cut(s)	1027
BmrFI	CCNGG	2 cut(s)	190, 512
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	4 cut(s)	183, 193, 552, 913
BmuI	ACTGGG	1 cut(s)	138
BpmI	CTGGAG	1 cut(s)	1134
Bpu10I	CCTNAGC	1 cut(s)	1008
BpuMI	CCSGG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	1198
BsaJI	CCNNGG	1 cut(s)	787
BsaXI	ACNNNNNCTCC	2 cut(s)	900, 930
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 310
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	3 cut(s)	421, 444, 1047
BseBI	CCWGG	1 cut(s)	512
BseCI	ATCGAT	1 cut(s)	1198
BseDI	CCNNGG	1 cut(s)	787
BseGI	GGATG	8 cut(s)	77, 82, 198, 462, 543, 841, 1019, 1227
BseLI	CCNNNNNNNGG	2 cut(s)	253, 310
BseMI	GCAATG	3 cut(s)	421, 444, 1047
BseMII	CTCAG	1 cut(s)	997
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	2 cut(s)	350, 867
BseXI	GCAGC	1 cut(s)	936
BseYI	CCCAGC	1 cut(s)	593
BshFI	GGCC	2 cut(s)	510, 1068
BshVI	ATCGAT	1 cut(s)	1198
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	2 cut(s)	253, 310
BsmAI	GTCTC	2 cut(s)	36, 902
BsnI	GGCC	2 cut(s)	510, 1068
Bsp143I	GATC	5 cut(s)	13, 100, 384, 1195, 1199
BspANI	GGCC	2 cut(s)	510, 1068
BspCNI	CTCAG	1 cut(s)	996
BspDI	ATCGAT	1 cut(s)	1198
BspLI	GGNNCC	1 cut(s)	1027
BspMAI	CTGCAG	2 cut(s)	290, 954
BsrDI	GCAATG	3 cut(s)	421, 444, 1047
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	1 cut(s)	787
BssMI	GATC	5 cut(s)	13, 100, 384, 1195, 1199
BssT1I	CCWWGG	1 cut(s)	787
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	5 cut(s)	214, 256, 266, 281, 382
BstC8I	GCNNGC	2 cut(s)	647, 1110
BstDEI	CTNAG	3 cut(s)	373, 983, 1008
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	8 cut(s)	77, 82, 198, 462, 543, 841, 1019, 1227
BstKTI	GATC	5 cut(s)	16, 103, 387, 1198, 1202
BstMAI	GTCTC	2 cut(s)	36, 902
BstMBI	GATC	5 cut(s)	13, 100, 384, 1195, 1199
BstNI	CCWGG	1 cut(s)	512
BstSCI	CCNGG	2 cut(s)	188, 510
BstSFI	CTRYAG	2 cut(s)	286, 950
BstV1I	GCAGC	1 cut(s)	936
Bsu15I	ATCGAT	1 cut(s)	1198
BsuRI	GGCC	2 cut(s)	510, 1068
BsuTUI	ATCGAT	1 cut(s)	1198
BtsCI	GGATG	8 cut(s)	77, 82, 198, 462, 543, 841, 1019, 1227
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	647, 1110
ClaI	ATCGAT	1 cut(s)	1198
Csp6I	GTAC	2 cut(s)	262, 267
CviAII	CATG	5 cut(s)	467, 625, 736, 886, 1034
CviQI	GTAC	2 cut(s)	262, 267
DdeI	CTNAG	3 cut(s)	373, 983, 1008
DpnI	GATC	5 cut(s)	15, 102, 386, 1197, 1201
DpnII	GATC	5 cut(s)	13, 100, 384, 1195, 1199
EaeI	YGGCCR	1 cut(s)	1066
Eco130I	CCWWGG	1 cut(s)	787
Eco32I	GATATC	1 cut(s)	708
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	708
EcoT14I	CCWWGG	1 cut(s)	787
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	787
FaeI	CATG	5 cut(s)	470, 628, 739, 889, 1037
FalI	AAGNNNNNCTT	2 cut(s)	1064, 1096
FatI	CATG	5 cut(s)	466, 624, 735, 885, 1033
FbaI	TGATCA	2 cut(s)	13, 100
Fnu4HI	GCNGC	1 cut(s)	950
FokI	GGATG	7 cut(s)	84, 89, 205, 469, 530, 848, 1026
Fsp4HI	GCNGC	1 cut(s)	950
FspBI	CTAG	1 cut(s)	788
GluI	GCNGC	1 cut(s)	950
GsaI	CCCAGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	1134
HaeIII	GGCC	2 cut(s)	510, 1068
HapII	CCGG	1 cut(s)	189
Hin1II	CATG	5 cut(s)	470, 628, 739, 889, 1037
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	2 cut(s)	643, 999
HinfI	GANTC	4 cut(s)	220, 463, 656, 915
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	2 cut(s)	226, 268
Hpy166II	GTNNAC	3 cut(s)	462, 517, 695
Hpy188I	TCNGA	4 cut(s)	328, 345, 920, 986
Hpy188III	TCNNGA	2 cut(s)	17, 863
Hpy8I	GTNNAC	3 cut(s)	462, 517, 695
HpyAV	CCTTC	5 cut(s)	125, 304, 312, 724, 899
HpyCH4III	ACNGT	5 cut(s)	214, 256, 266, 281, 382
HpyCH4IV	ACGT	3 cut(s)	62, 260, 560
HpyF3I	CTNAG	3 cut(s)	373, 983, 1008
HpySE526I	ACGT	3 cut(s)	62, 260, 560
Hsp92II	CATG	5 cut(s)	470, 628, 739, 889, 1037
Ksp22I	TGATCA	2 cut(s)	13, 100
Kzo9I	GATC	5 cut(s)	13, 100, 384, 1195, 1199
LmnI	GCTCC	3 cut(s)	201, 337, 1025
Lsp1109I	GCAGC	1 cut(s)	936
LweI	GCATC	4 cut(s)	183, 193, 552, 913
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	3 cut(s)	62, 260, 560
MaeIII	GTNAC	2 cut(s)	46, 256
MalI	GATC	5 cut(s)	15, 102, 386, 1197, 1201
MboI	GATC	5 cut(s)	13, 100, 384, 1195, 1199
MboII	GAAGA	4 cut(s)	547, 625, 628, 969
MlsI	TGGCCA	1 cut(s)	1068
MluNI	TGGCCA	1 cut(s)	1068
MlyI	GAGTC	3 cut(s)	229, 457, 924
Mox20I	TGGCCA	1 cut(s)	1068
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	1068
MseI	TTAA	3 cut(s)	1055, 1098, 1185
MslI	CAYNNNNRTG	4 cut(s)	9, 164, 471, 629
Msp20I	TGGCCA	1 cut(s)	1068
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	2 cut(s)	190, 512
MvaI	CCWGG	1 cut(s)	512
NciI	CCSGG	1 cut(s)	190
NdeII	GATC	5 cut(s)	13, 100, 384, 1195, 1199
NlaIII	CATG	5 cut(s)	470, 628, 739, 889, 1037
NlaIV	GGNNCC	1 cut(s)	1027
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	951
PleI	GAGTC	3 cut(s)	228, 457, 923
PpsI	GAGTC	3 cut(s)	228, 457, 923
PsiI	TTATAA	2 cut(s)	774, 879
Psp6I	CCWGG	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	1 cut(s)	1027
PstI	CTGCAG	2 cut(s)	290, 954
RsaI	GTAC	2 cut(s)	263, 268
RsaNI	GTAC	2 cut(s)	262, 267
RseI	CAYNNNNRTG	4 cut(s)	9, 164, 471, 629
SaqAI	TTAA	3 cut(s)	1055, 1098, 1185
SatI	GCNGC	1 cut(s)	950
Sau3AI	GATC	5 cut(s)	13, 100, 384, 1195, 1199
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	3 cut(s)	229, 457, 924
ScrFI	CCNGG	2 cut(s)	190, 512
SfaNI	GCATC	4 cut(s)	183, 193, 552, 913
SfcI	CTRYAG	2 cut(s)	286, 950
SmiMI	CAYNNNNRTG	4 cut(s)	9, 164, 471, 629
SspI	AATATT	3 cut(s)	241, 394, 990
SspMI	CTAG	1 cut(s)	788
StyD4I	CCNGG	2 cut(s)	188, 510
StyI	CCWWGG	1 cut(s)	787
TaaI	ACNGT	5 cut(s)	214, 256, 266, 281, 382
TaiI	ACGT	3 cut(s)	65, 263, 563
TaqI	TCGA	1 cut(s)	1198
TatI	WGTACW	1 cut(s)	266
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	3 cut(s)	1055, 1098, 1185
Tru9I	TTAA	3 cut(s)	1055, 1098, 1185
TscAI	CASTG	1 cut(s)	666
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	1 cut(s)	949
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	6 cut(s)	144, 368, 613, 621, 905, 957
TspGWI	ACGGA	2 cut(s)	188, 840
TspRI	CASTG	1 cut(s)	666
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	811, 1180
XmaJI	CCTAGG	1 cut(s)	787
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	1 cut(s)	788
ZrmI	AGTACT	1 cut(s)	268
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.