Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Forward (+)

27095538 .. 27106385

Gene Structure 10848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2643 bp

ATGAAGGTAGGACAGGATTTCAAAATCTCAAAGTCATACATTGCTGAGGTGATTGCAATGTCTCCCTTGACCGAGCATAACTTCTCGTTACCCTTGCGAATGATGAACCGATTACCAAGCCAGGAAACACATGCCGGATACGAATTAGAAAGCTCTCCTTTATGTTTCTCCTACATGTCCCCTACTAAGAATGTTGACATACTCAGAATCGATCACCCTTTAAGACACACACAGGCTATAGCTAGCTTAACCCCAACCCCCCAAACCCTCCGCCCCTGCCTCGTTTCCCTCGTCCGAATCTTCGCCAAGTCACGCCTCGCTGACAAGACCCTTTCGCATTTTAAGTCTCTCCGAAGCCACTTCCCCAATGACCCTCCTTCTGTTTATTTGTATAATCTGCTTCTCGAGTCCGCTCTCAGGGAGAACGATGTGGATTACGTGTTGTGGTTGTATAAGGATATGATTGTTTCCGGGGTTCAGCCCGAAACGTATACTTTTAATCTTCTGATCTGTGCGTTGTGCGATTGTGGTCGTTTGGAAGATGCACGCCAGGTGTTCGATAAAATGCGTGAGAAGGGTTGTCAGCCGAATGAGTACAGCGTTGGGATTTTGGTTCGCGGGTATTGCAGAGCTGGGCTTAGTAGTGGAGGGTTGGAGGTTTTGGATTGTGGTGTTGTGCCCAATAGGGTTGTGTATAATACTTTGGTTTCGAGTTTTTGTAAAGAAGGCAGGACTGATGAGGCCGAGAAATTGGTGGAGAGGATGCGAGAGGAGGGTATGTTTCCGGATGTCATTACTTTCAATTCGAGGATATCGGCTCTATGTAGTGCAGGGAAGATTCTTGAAGCGTCTAGAATATTTAGAGATATGCATATGGATCGGGCTTTGGGGCTGCCGCAACCCAATGGTGTAACGTATAATCTGATGTTACAAGGATTTTGCAAGGAAGGGATGTTAGAGGAAGCAGAGAGCTTGTTCAAATCTATGGAAAAAGCTGGTGGTTTGATTAATATAGAGAGCTATAATATATGGTTGTTGGGTTTGGTCAGGAATAAGAAGCTCTTGGAGGCTCGACTGGTTCTGAAAGAGATGGTAGATAAGGGAATAGAACCCAACATTTACTCATATAACATTGTGATAAATGGGTTATGCAAAAATGGGATGCTCCGTGATGCAAGAATTGTGATGGGTCTGATGGCAAGAAACAATATTTCGCCAGATACGGTTACCTTCAGTACTTTGCTACACGGATACTGCAATAAAGGGAAGGTATTTGAAGCCAACAATGTTCTGCAAGAGATGATAACAAAGAATTGCTTCCCAAATACTCATACTTGCAACATTCTGCTGCACAGTTTATGGACAGAGGGAAGAACATCAGAGGCGGAGGAACTGCTGCAAAAGATGAATGAGAGAGGTTATGGTTTAGATACTGTGACCTGCAATATCGTGATCGATGGTCTGTGCAATGATGGGAAATTGGACAAAGCAATTGAAATTGTAAGTGGGATGTGGACTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAATTCCTTTGTTGGCCTGGTTGATGATAGTAATAATGGGAATAAATGCCTTCCAGATTTGATCTCATATTCAACCATAATTAGTGGGTTGTGCAAGGCTGGGAGGCTTGATGCAGCTAAGAAGAAGTTCATGGAGATGATGGGCAAAAACTTGCACCCTGATTCAGTGATTTATGATACTTTTATACATAGCTTTTGTAAACAAGGAAGGATATCATCTGCATTTCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAAACTTATAATTCACTAATCCTGGGCTTAGGGAGTAAAAAGCAAATATTTGAAATATATGGGCTGATGGATGAAATGAAAGAGAGGGGAGTCCCTCCTGATGTGTGTACTTACAATAATATGATGTATTGTCTCTGTGAAGTAGAGAGAGTCAAAGATGCAACTTCTCTTTTAGATGAAATGCTGCAAAAGGGCATATCTCCGAATATTTCTACCTTCAGAATATTAATTAAAGCTTTCTGCAAGGGTTGTGATTTTGGAGTCGCACAGGAGTTATTTGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCCTTATATAGTTTGATGTTTAATGAGTTACTTGCTGGAGGGGAAGTCGCAAAAGCTACAGAGCTATTTGAAGAAGCATTGGACAAGTATTTTTATCTGGGGAACTTCCTTTACAAAGATCTTATTGATAGACTTTGCAAGGATCAAAAGTTGGAGGATGCCTGTAGCATTCTTCACAATATGATGAATAAGGGATACGGGTTTGATTCAGCATCCTTCCTACCAGTAATTGATGGCTTGGGTAAAAGGGGGAATAAGCATGAGGCTGATGAACTTGCAGAGAGAATGATGGAAATGGCATCAGAAGGTAGGATAGCAAATAAGGTTTACCGAAATGAGAGGGATATAATTCGTGGAAAACCAAAGTCTTGTGGAAGTGATTGGCAGACCATAGTGAACAGAGATGATGGCAGTGGAATCGTATTGAAAACTCTTAAGAGGGTGCAGAAAGGCTGGGGTCGAGCGAATCTAACGAGTTTGCAAACCCAGAAAGATGAATTTCTTGATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

880

Amino Acids

98.85

Weight (kDa)

6.63

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	126 - 175	9.1e-09	PPR repeat family
PPR_3	PF13812	151 - 197	8.6e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	158 - 190	3.3e-10	PPR repeat
PPR_2	PF13041	161 - 210	2.1e-15	PPR repeat family
PPR	PF01535	164 - 194	7.1e-08	PPR repeat
PPR_3	PF13812	223 - 273	8e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	224 - 256	4e-13	PPR repeat
PPR_2	PF13041	227 - 275	1.1e-13	PPR repeat family
PPR	PF01535	230 - 259	1.1e-08	PPR repeat
PPR_1	PF12854	259 - 290	3.5e-08	PPR repeat
PPR_1	PF12854	300 - 330	9.1e-10	PPR repeat
PPR_2	PF13041	301 - 347	3.7e-11	PPR repeat family
PPR	PF01535	304 - 333	7.3e-10	PPR repeat
PPR_long	PF17177	311 - 471	6.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	337 - 385	2.4e-13	PPR repeat family
PPR_1	PF12854	367 - 392	2.9e-09	PPR repeat
PPR_2	PF13041	371 - 420	3e-15	PPR repeat family
TPR_24	PF23276	393 - 500	1.6e-08	Fungal tetratrico peptide repeats
PPR_3	PF13812	399 - 451	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	403 - 434	1.3e-10	PPR repeat
PPR_2	PF13041	406 - 453	8.2e-14	PPR repeat family
PPR	PF01535	409 - 439	3e-06	PPR repeat
PPR_2	PF13041	442 - 490	2.7e-10	PPR repeat family
PPR_1	PF12854	473 - 504	6.3e-07	PPR repeat
PPR_1	PF12854	532 - 562	1.1e-10	PPR repeat
PPR_2	PF13041	534 - 572	1.5e-07	PPR repeat family
PPR_3	PF13812	560 - 613	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	565 - 598	3.8e-10	PPR repeat
PPR_2	PF13041	569 - 616	2.7e-13	PPR repeat family
PPR_long	PF17177	586 - 687	3e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	605 - 652	5.2e-12	PPR repeat family
PPR_3	PF13812	628 - 686	6.1e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	635 - 667	5e-08	PPR repeat
PPR_2	PF13041	639 - 688	1.7e-16	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1827
Acc36I	ACCTGC	1 cut(s)	1448
AccBSI	CCGCTC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	491
AccII	CGCG	1 cut(s)	618
AccIII	TCCGGA	1 cut(s)	784
AciI	CCGC	6 cut(s)	271, 411, 618, 896, 1385, 1529
AclWI	GGATC	2 cut(s)	885, 2280
AcoI	YGGCCR	1 cut(s)	2119
AcsI	RAATTY	2 cut(s)	1549, 2627
AcuI	CTGAAG	2 cut(s)	1216, 2020
AfaI	GTAC	3 cut(s)	596, 1237, 1927
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflII	CTTAAG	1 cut(s)	2564
AflIII	ACRYGT	2 cut(s)	174, 438
AjnI	CCWGG	4 cut(s)	120, 549, 1563, 1839
Alw26I	GTCTC	3 cut(s)	66, 351, 1955
AlwI	GGATC	2 cut(s)	885, 2280
Ama87I	CYCGRG	1 cut(s)	404
Aor13HI	TCCGGA	1 cut(s)	784
AoxI	GGCC	3 cut(s)	741, 1561, 2119
ApeKI	GCWGC	5 cut(s)	892, 1348, 1396, 1661, 2002
ApoI	RAATTY	2 cut(s)	1549, 2627
AseI	ATTAAT	2 cut(s)	1008, 2045
Asp700I	GAANNNNTTC	2 cut(s)	1316, 1673
AsuC2I	CCSGG	1 cut(s)	472
AsuHPI	GGTGA	2 cut(s)	61, 206
AsuNHI	GCTAGC	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	404
BaeGI	GKGCMC	1 cut(s)	681
BalI	TGGCCA	1 cut(s)	2121
BbvCI	CCTCAGC	1 cut(s)	45
BbvI	GCAGC	5 cut(s)	879, 1335, 1383, 1673, 1989
BcgI	CGANNNNNNTGC	4 cut(s)	860, 894, 2530, 2564
BciT130I	CCWGG	4 cut(s)	122, 551, 1565, 1841
BciVI	GTATCC	3 cut(s)	131, 1244, 2318
BcnI	CCSGG	1 cut(s)	472
BcoDI	GTCTC	3 cut(s)	66, 351, 1955
BfaI	CTAG	2 cut(s)	243, 852
BfmI	CTRYAG	3 cut(s)	237, 2187, 2293
BfrI	CTTAAG	1 cut(s)	2564
BfuAI	ACCTGC	1 cut(s)	1448
BfuI	GTATCC	3 cut(s)	131, 1244, 2318
BglII	AGATCT	1 cut(s)	2248
BisI	GCNGC	7 cut(s)	893, 896, 1349, 1397, 1530, 1662, 2003
BlsI	GCNGC	7 cut(s)	894, 897, 1350, 1398, 1531, 1663, 2004
BmcAI	AGTACT	1 cut(s)	1237
Bme1390I	CCNGG	5 cut(s)	122, 472, 551, 1565, 1841
BmeT110I	CYCGRG	1 cut(s)	404
BmrFI	CCNGG	5 cut(s)	122, 472, 551, 1565, 1841
BmsI	GCATC	9 cut(s)	532, 753, 1152, 1162, 1648, 1966, 2278, 2351, 2438
BmtI	GCTAGC	1 cut(s)	246
BpmI	CTGGAG	1 cut(s)	2187
Bpu10I	CCTNAGC	2 cut(s)	45, 1846
BpuMI	CCSGG	1 cut(s)	472
Bsa29I	ATCGAT	2 cut(s)	210, 1455
BsaAI	YACGTR	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	471, 1840
BsaWI	WCCGGW	1 cut(s)	784
BsaXI	ACNNNNNCTCC	4 cut(s)	764, 794, 2160, 2190
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	1080, 2354
Bse3DI	GCAATG	4 cut(s)	39, 63, 1474, 2100
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	4 cut(s)	122, 551, 1565, 1841
BseCI	ATCGAT	2 cut(s)	210, 1455
BseDI	CCNNGG	2 cut(s)	471, 1840
BseGI	GGATG	8 cut(s)	768, 793, 957, 1167, 1515, 1894, 2293, 2342
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMI	GCAATG	4 cut(s)	39, 63, 1474, 2100
BseMII	CTCAG	3 cut(s)	36, 217, 430
BseNI	ACTGG	2 cut(s)	1080, 2354
BseRI	GAGGAG	1 cut(s)	785
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	5 cut(s)	879, 1335, 1383, 1673, 1989
BseYI	CCCAGC	3 cut(s)	632, 1646, 2583
BsgI	GTGCAG	3 cut(s)	849, 1334, 2594
Bsh1236I	CGCG	1 cut(s)	618
BshFI	GGCC	3 cut(s)	743, 1563, 2121
BshVI	ATCGAT	2 cut(s)	210, 1455
BsiHKCI	CYCGRG	1 cut(s)	404
BsiSI	CCGG	3 cut(s)	135, 471, 785
BslFI	GGGAC	2 cut(s)	163, 1895
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	66, 351, 1955
BsmFI	GGGAC	2 cut(s)	163, 1895
BsmI	GAATGC	2 cut(s)	1815, 2298
BsnI	GGCC	3 cut(s)	743, 1563, 2121
BsoBI	CYCGRG	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp13I	TCCGGA	1 cut(s)	784
Bsp143I	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
BspACI	CCGC	6 cut(s)	271, 411, 618, 896, 1385, 1529
BspANI	GGCC	3 cut(s)	743, 1563, 2121
BspCNI	CTCAG	3 cut(s)	37, 216, 429
BspDI	ATCGAT	2 cut(s)	210, 1455
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	618
BspMI	ACCTGC	1 cut(s)	1448
BspOI	GCTAGC	1 cut(s)	246
BspPI	GGATC	2 cut(s)	885, 2280
BspTI	CTTAAG	1 cut(s)	2564
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	4 cut(s)	39, 63, 1474, 2100
BsrI	ACTGG	2 cut(s)	1080, 2354
BssECI	CCNNGG	2 cut(s)	471, 1840
BssMI	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
BssNAI	GTATAC	1 cut(s)	492
Bst1107I	GTATAC	1 cut(s)	492
Bst2UI	CCWGG	4 cut(s)	122, 551, 1565, 1841
Bst4CI	ACNGT	3 cut(s)	1225, 1355, 1435
BstAFI	CTTAAG	1 cut(s)	2564
BstBAI	YACGTR	1 cut(s)	439
BstC8I	GCNNGC	2 cut(s)	244, 547
BstDEI	CTNAG	8 cut(s)	45, 186, 203, 416, 638, 1543, 1665, 1846
BstEII	GGTNACC	1 cut(s)	1225
BstF5I	GGATG	8 cut(s)	768, 793, 957, 1167, 1515, 1894, 2293, 2342
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	7 cut(s)	214, 510, 880, 1455, 1611, 2251, 2275
BstMAI	GTCTC	3 cut(s)	66, 351, 1955
BstMBI	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
BstMWI	GCNNNNNNNGC	2 cut(s)	624, 1812
BstNI	CCWGG	4 cut(s)	122, 551, 1565, 1841
BstNSI	RCATGY	2 cut(s)	134, 178
BstPI	GGTNACC	1 cut(s)	1225
BstSCI	CCNGG	5 cut(s)	120, 470, 549, 1563, 1839
BstSFI	CTRYAG	3 cut(s)	237, 2187, 2293
BstSLI	GKGCMC	1 cut(s)	681
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	5 cut(s)	879, 1335, 1383, 1673, 1989
BstX2I	RGATCY	1 cut(s)	2248
BstYI	RGATCY	1 cut(s)	2248
BstZ17I	GTATAC	1 cut(s)	492
Bsu15I	ATCGAT	2 cut(s)	210, 1455
BsuI	GTATCC	3 cut(s)	131, 1244, 2318
BsuRI	GGCC	3 cut(s)	743, 1563, 2121
BsuTUI	ATCGAT	2 cut(s)	210, 1455
BtsCI	GGATG	8 cut(s)	768, 793, 957, 1167, 1515, 1894, 2293, 2342
BtsI	GCAGTG	1 cut(s)	2548
BtsIMutI	CAGTG	2 cut(s)	1719, 2548
BveI	ACCTGC	1 cut(s)	1448
Cac8I	GCNNGC	2 cut(s)	244, 547
ClaI	ATCGAT	2 cut(s)	210, 1455
CseI	GACGC	1 cut(s)	837
Csp6I	GTAC	3 cut(s)	595, 1236, 1926
CviAII	CATG	6 cut(s)	131, 175, 1520, 1678, 1789, 2390
CviQI	GTAC	3 cut(s)	595, 1236, 1926
DdeI	CTNAG	8 cut(s)	45, 186, 203, 416, 638, 1543, 1665, 1846
DpnI	GATC	7 cut(s)	213, 509, 879, 1454, 1610, 2250, 2274
DpnII	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
EaeI	YGGCCR	1 cut(s)	2119
EciI	GGCGGA	2 cut(s)	260, 1400
Eco32I	GATATC	2 cut(s)	813, 1761
Eco57I	CTGAAG	2 cut(s)	1216, 2020
Eco88I	CYCGRG	1 cut(s)	404
Eco91I	GGTNACC	1 cut(s)	1225
EcoO65I	GGTNACC	1 cut(s)	1225
EcoRI	GAATTC	1 cut(s)	1549
EcoRII	CCWGG	4 cut(s)	120, 549, 1563, 1839
EcoRV	GATATC	2 cut(s)	813, 1761
EcoT22I	ATGCAT	1 cut(s)	873
FaeI	CATG	6 cut(s)	134, 178, 1523, 1681, 1792, 2393
FalI	AAGNNNNNCTT	8 cut(s)	142, 174, 1046, 1078, 1301, 1333, 2117, 2149
FaqI	GGGAC	2 cut(s)	163, 1895
FatI	CATG	6 cut(s)	130, 174, 1519, 1677, 1788, 2389
FauI	CCCGC	1 cut(s)	611
FauNDI	CATATG	1 cut(s)	873
FblI	GTMKAC	1 cut(s)	491
Fnu4HI	GCNGC	7 cut(s)	893, 896, 1349, 1397, 1530, 1662, 2003
FokI	GGATG	8 cut(s)	775, 800, 964, 1174, 1522, 1901, 2300, 2329
Fsp4HI	GCNGC	7 cut(s)	893, 896, 1349, 1397, 1530, 1662, 2003
FspBI	CTAG	2 cut(s)	243, 852
GluI	GCNGC	7 cut(s)	893, 896, 1349, 1397, 1530, 1662, 2003
GsaI	CCCAGC	3 cut(s)	636, 1650, 2587
GsuI	CTGGAG	1 cut(s)	2187
HaeIII	GGCC	3 cut(s)	743, 1563, 2121
HapII	CCGG	3 cut(s)	135, 471, 785
HgaI	GACGC	1 cut(s)	837
Hin1II	CATG	6 cut(s)	134, 178, 1523, 1681, 1792, 2393
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	2052
HpaII	CCGG	3 cut(s)	135, 471, 785
HphI	GGTGA	2 cut(s)	61, 206
Hpy166II	GTNNAC	7 cut(s)	196, 492, 1515, 1748, 1926, 2458, 2527
Hpy188III	TCNNGA	9 cut(s)	404, 785, 842, 852, 1048, 1450, 1601, 1916, 2633
Hpy8I	GTNNAC	7 cut(s)	196, 492, 1515, 1748, 1926, 2458, 2527
HpyCH4III	ACNGT	3 cut(s)	1225, 1355, 1435
HpyCH4IV	ACGT	3 cut(s)	438, 488, 914
HpyF10VI	GCNNNNNNNGC	2 cut(s)	624, 1812
HpyF3I	CTNAG	8 cut(s)	45, 186, 203, 416, 638, 1543, 1665, 1846
HpySE526I	ACGT	3 cut(s)	438, 488, 914
Hsp92II	CATG	6 cut(s)	134, 178, 1523, 1681, 1792, 2393
Kpn2I	TCCGGA	1 cut(s)	784
Kzo9I	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
LmnI	GCTCC	1 cut(s)	1170
Lsp1109I	GCAGC	5 cut(s)	879, 1335, 1383, 1673, 1989
LweI	GCATC	9 cut(s)	532, 753, 1152, 1162, 1648, 1966, 2278, 2351, 2438
MaeI	CTAG	2 cut(s)	243, 852
MaeII	ACGT	3 cut(s)	438, 488, 914
MaeIII	GTNAC	7 cut(s)	87, 309, 910, 927, 1225, 1435, 2157
MalI	GATC	7 cut(s)	213, 509, 879, 1454, 1610, 2250, 2274
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
MboII	GAAGA	9 cut(s)	292, 494, 551, 847, 1383, 1681, 1807, 2213, 2294
MfeI	CAATTG	1 cut(s)	1491
MflI	RGATCY	1 cut(s)	2248
MhlI	GDGCHC	1 cut(s)	681
MlsI	TGGCCA	1 cut(s)	2121
MluNI	TGGCCA	1 cut(s)	2121
MlyI	GAGTC	5 cut(s)	416, 1510, 1917, 1977, 2088
MmeI	TCCRAC	2 cut(s)	633, 2262
Mox20I	TGGCCA	1 cut(s)	2121
Mph1103I	ATGCAT	1 cut(s)	873
MroI	TCCGGA	1 cut(s)	784
MroXI	GAANNNNTTC	2 cut(s)	1316, 1673
MscI	TGGCCA	1 cut(s)	2121
MslI	CAYNNNNRTG	2 cut(s)	1524, 1682
Msp20I	TGGCCA	1 cut(s)	2121
MspCI	CTTAAG	1 cut(s)	2564
MspI	CCGG	3 cut(s)	135, 471, 785
MspR9I	CCNGG	5 cut(s)	122, 472, 551, 1565, 1841
MunI	CAATTG	1 cut(s)	1491
Mva1269I	GAATGC	2 cut(s)	1815, 2298
MvaI	CCWGG	4 cut(s)	122, 551, 1565, 1841
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	2 cut(s)	624, 1812
NciI	CCSGG	1 cut(s)	472
NdeI	CATATG	1 cut(s)	873
NdeII	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
NheI	GCTAGC	1 cut(s)	242
NlaIII	CATG	6 cut(s)	134, 178, 1523, 1681, 1792, 2393
NmeAIII	GCCGAG	1 cut(s)	769
NmuCI	GTSAC	2 cut(s)	309, 1435
NsiI	ATGCAT	1 cut(s)	873
NspI	RCATGY	2 cut(s)	134, 178
PacI	TTAATTAA	1 cut(s)	2049
PaeR7I	CTCGAG	1 cut(s)	404
PciI	ACATGT	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	2 cut(s)	1815, 2298
PdmI	GAANNNNTTC	2 cut(s)	1316, 1673
PfeI	GAWTC	7 cut(s)	207, 297, 838, 1709, 2336, 2547, 2596
PkrI	GCNGC	7 cut(s)	894, 897, 1350, 1398, 1531, 1663, 2004
PleI	GAGTC	5 cut(s)	415, 1510, 1916, 1976, 2087
PpsI	GAGTC	5 cut(s)	415, 1510, 1916, 1976, 2087
Ppu21I	YACGTR	1 cut(s)	439
PscI	ACATGT	1 cut(s)	174
PshBI	ATTAAT	2 cut(s)	1008, 2045
PsiI	TTATAA	1 cut(s)	1827
Psp6I	CCWGG	4 cut(s)	120, 549, 1563, 1839
PspEI	GGTNACC	1 cut(s)	1225
PspFI	CCCAGC	3 cut(s)	632, 1646, 2583
PspGI	CCWGG	4 cut(s)	120, 549, 1563, 1839
PsrI	GAACNNNNNNTAC	2 cut(s)	2225, 2257
PsuI	RGATCY	1 cut(s)	2248
RsaI	GTAC	3 cut(s)	596, 1237, 1927
RsaNI	GTAC	3 cut(s)	595, 1236, 1926
RseI	CAYNNNNRTG	2 cut(s)	1524, 1682
SatI	GCNGC	7 cut(s)	893, 896, 1349, 1397, 1530, 1662, 2003
Sau3AI	GATC	7 cut(s)	211, 507, 877, 1452, 1608, 2248, 2272
ScaI	AGTACT	1 cut(s)	1237
SchI	GAGTC	5 cut(s)	416, 1510, 1917, 1977, 2088
ScrFI	CCNGG	5 cut(s)	122, 472, 551, 1565, 1841
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	9 cut(s)	532, 753, 1152, 1162, 1648, 1966, 2278, 2351, 2438
SfcI	CTRYAG	3 cut(s)	237, 2187, 2293
Sfr274I	CTCGAG	1 cut(s)	404
SlaI	CTCGAG	1 cut(s)	404
SmiMI	CAYNNNNRTG	2 cut(s)	1524, 1682
SmlI	CTYRAG	2 cut(s)	404, 2564
SmoI	CTYRAG	2 cut(s)	404, 2564
SsiI	CCGC	6 cut(s)	271, 411, 618, 896, 1385, 1529
SspI	AATATT	5 cut(s)	858, 1210, 1866, 2026, 2043
SspMI	CTAG	2 cut(s)	243, 852
StyD4I	CCNGG	5 cut(s)	120, 470, 549, 1563, 1839
TaaI	ACNGT	3 cut(s)	1225, 1355, 1435
TaiI	ACGT	3 cut(s)	441, 491, 917
TaqI	TCGA	8 cut(s)	210, 405, 558, 710, 806, 1072, 1455, 2590
TaqII	GACCGA	1 cut(s)	86
TatI	WGTACW	3 cut(s)	594, 1235, 1925
TauI	GCSGC	2 cut(s)	898, 1532
TfiI	GAWTC	7 cut(s)	207, 297, 838, 1709, 2336, 2547, 2596
TscAI	CASTG	2 cut(s)	1719, 2548
TseFI	GTSAC	2 cut(s)	309, 1435
TseI	GCWGC	5 cut(s)	892, 1348, 1396, 1661, 2002
Tsp45I	GTSAC	2 cut(s)	309, 1435
TspGWI	ACGGA	2 cut(s)	1157, 1263
TspRI	CASTG	2 cut(s)	1719, 2548
Vha464I	CTTAAG	1 cut(s)	2564
VspI	ATTAAT	2 cut(s)	1008, 2045
XapI	RAATTY	2 cut(s)	1549, 2627
XbaI	TCTAGA	1 cut(s)	851
XceI	RCATGY	2 cut(s)	134, 178
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	1 cut(s)	491
XmnI	GAANNNNTTC	2 cut(s)	1316, 1673
XspI	CTAG	2 cut(s)	243, 852
ZrmI	AGTACT	1 cut(s)	1237
Zsp2I	ATGCAT	1 cut(s)	873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.