Rorug06G0134300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004810
Physical Location & Seq
Reverse (-)
19040154 .. 19041967
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0134300.1

Sequence Viewer

Length: 1788 bp
ATGATGCGGAGAGCTGCTGCTGCTTCTTCTTCTTCTTATTGCAACAACAGAGGTAGAGGAGGAGGAGGAGGAGGAGGTATGCCTCGTCTTCATTCTATTCTTGTTTTCTTCAACAATATCTTTGTATATTCCTTTCATTCTCAAGCTTCAGTGGCCAAGCTCACTAATCTTGGGGTTGGGGATGGCGTAAGTTTGTTCAATGCGATGCTTCAAATGCGTCCTCTGCCTTGTGTTGTCCGTTTCAATCAAATCATGGGTCACATCGCAAAATTGAAACATTATCAGGCAGTCATTTCTCTGTATACCCAAATGGATCGGCTAAGAGTTGTTCCCGATGCTTACACTCTCAATATTATCATCAATTGCTTCTGTCATTTGAACCAAATGGGATTCAGTTTGTGTGTGTTGGGAAAATTCTTCAAATTTGGTATTCAACCAAATATCACAACCCTCAACACTCTTATCAAGGGCTTTTTCCTTGAAGGGAAAGTTTCTCAGGCAGCACTACTTTTCAGCACAATGGTGGAGCAAGGTTGTAAGCCGAATGATGTTACTTTCGGAACACTAATGAAGGGCTATTGCATGATGGGAAATAATACTGCAGCTATTCAATTGCTTAGGAAGATGGAACAACAATCTCGAGATTGTAAGCCTAATGTGGTTGTCTATAATATCATCATTGACAGTCTCTGTAAGGATACACTAGTTCCTGATGCAGTTAAGCTCTTCTCAGAAATGATTAGTAGGGGTATTGCCCCTGACGTCATTACTTATACCTCTTTGATTCATGGAGTTTGCAAATTAGGCCAGTGGAAAGAAGCTACGAGATTGTTGAATGAGATGGTCAGTAAGGATATCTTCCCGAATTTAGTAACCTTCAGTACCCTGGTCGATACACTTTGTAAGGAGGGGATGGTTGTGGAAGCACAAAGTGTGCTTGAAATGATGATTCAAAGAGGTATCAAACCTGATACAGTCACCTACAGTTCACTTATGGATGGCTACTGTCTGCGAGGAGAAATGGAGAAAGCTAAAGAGGTTTTTGATATGATGAATGGCAAGGGCTCCGTTGTTAATGCTTATAGTTATACCATACTGATAAATGGATATTGTAGGTGTAAAAGGATGAATGAGGCCATCAGGCTTTTTCACGAAATGTCTGATAGGGGACTGGTTCCAAATACCATCACATATACTGCTCTTATGGATGGTTTTTGCAAAGTGGGAAGAATACTAGATGCCCAGAGATTGTTCAGCAAGTTGCAAGCTTGTGGCCAAGTTCTTGATCTTCAAACTTATGCCGTTCTACTGGATGGCCTGTTTAAAAACCAACAACTTGCTATGGCAATGGAGTTGTTCGGGGAGTTGGAATGCATGAAGCTGGATTTGAATATAGTAATATACAGTACTCTTATTGAAGGTTTGTGTATAGCTGGAAAAATTGCATCTGCAAGGGACCATTTTTACGGTTTATCATCAAAAGGACTTGAACCTGATGCAAGGACGTACACTATAATGATCAAGGGACTTTGTGACAGAGGTTTAATAACTGAAGCGGAAAAGTTGCTTAGAGAAATGGAAGATAAATGCCGTTCTCCAAATGACTGCACATATAACACAATTATCCGAGGGTTTCTCAATAATGACGAGACAGTCAAGGCAGTGGGACTTGTTCACGAAATGATGGACAGGGGTTTCTCTGCAGATGCATGGACGATGGAATTAATCATTGGTTTATTGTCTAAAGATAAAGTAGATCCTGCTTTGTTGTCATTGATAGAAAAGTAA

Protein Analysis

595

Amino Acids

66.27

Weight (kDa)

8.36

Isoelectric Point (pI)

27.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 76 - 125 1.1e-09 PPR repeat family
PPR_3 PF13812 143 - 193 4e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 143 - 175 1.6e-06 PPR repeat
PPR_2 PF13041 146 - 194 8e-14 PPR repeat family
PPR_1 PF12854 178 - 210 2e-09 PPR repeat
PPR_2 PF13041 184 - 232 2.9e-10 PPR repeat family
PPR_long PF17177 201 - 333 2.3e-09 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 214 - 246 1.1e-11 PPR repeat
PPR_2 PF13041 218 - 267 1.5e-18 PPR repeat family
PPR PF01535 221 - 251 2.6e-06 PPR repeat
PPR_3 PF13812 241 - 300 7.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 249 - 282 2e-12 PPR repeat
PPR_2 PF13041 254 - 302 5e-16 PPR repeat family
PPR PF01535 256 - 286 1.6e-07 PPR repeat
PPR_1 PF12854 284 - 316 8.6e-10 PPR repeat
PPR_2 PF13041 291 - 336 3.3e-13 PPR repeat family
PPR PF01535 291 - 321 8.5e-06 PPR repeat
PPR_1 PF12854 319 - 351 6e-12 PPR repeat
PPR PF01535 326 - 355 7e-08 PPR repeat
PPR_2 PF13041 330 - 372 3.1e-11 PPR repeat family
TPR_24 PF23276 340 - 455 1.1e-10 Fungal tetratrico peptide repeats
PPR_3 PF13812 351 - 403 3.9e-06 Pentatricopeptide repeat domain
PPR_1 PF12854 354 - 387 2.6e-11 PPR repeat
PPR PF01535 361 - 391 4e-09 PPR repeat
PPR_2 PF13041 362 - 407 1.6e-18 PPR repeat family
PPR_1 PF12854 389 - 420 2.7e-10 PPR repeat
PPR_2 PF13041 393 - 442 6.5e-11 PPR repeat family
PPR_2 PF13041 464 - 512 2e-12 PPR repeat family
PPR_1 PF12854 494 - 527 1e-12 PPR repeat
PPR PF01535 502 - 529 1.4e-06 PPR repeat
PPR_2 PF13041 509 - 546 8e-08 PPR repeat family
PPR_2 PF13041 533 - 578 2.6e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1652
AatII GACGTC 1 cut(s) 765
AccI GTMKAC 1 cut(s) 302
AciI CCGC 2 cut(s) 7, 1556
AclWI GGATC 2 cut(s) 321, 1751
AcoI YGGCCR 2 cut(s) 153, 1273
AcsI RAATTY 3 cut(s) 413, 422, 865
AcuI CTGAAG 3 cut(s) 132, 862, 1572
AcyI GRCGYC 1 cut(s) 762
AdeI CACNNNGTG 1 cut(s) 932
AfaI GTAC 3 cut(s) 883, 1408, 1508
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 1 cut(s) 885
AjuI GAANNNNNNNTTGG 2 cut(s) 1713, 1745
AleI CACNNNNGTG 1 cut(s) 521
Alw26I GTCTC 2 cut(s) 692, 1643
AlwI GGATC 2 cut(s) 321, 1751
AlwNI CAGNNNCTG 1 cut(s) 690
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 5 cut(s) 153, 805, 1134, 1273, 1315
ApeKI GCWGC 5 cut(s) 14, 17, 20, 500, 602
ApoI RAATTY 3 cut(s) 413, 422, 865
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
AseI ATTAAT 1 cut(s) 1724
AspS9I GGNCC 1 cut(s) 1456
AsuHPI GGTGA 1 cut(s) 970
AvaI CYCGRG 1 cut(s) 639
AvaII GGWCC 1 cut(s) 1456
BaeI ACNNNNGTAYC 2 cut(s) 690, 723
BalI TGGCCA 2 cut(s) 155, 1275
BanII GRGCYC 1 cut(s) 1067
BbsI GAAGAC 1 cut(s) 80
BbvI GCAGC 4 cut(s) 4, 7, 512, 614
BceAI ACGGC 2 cut(s) 1286, 1575
BciT130I CCWGG 1 cut(s) 887
BciVI GTATCC 1 cut(s) 691
BclI TGATCA 1 cut(s) 1518
BcoDI GTCTC 2 cut(s) 692, 1643
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 2 cut(s) 704, 1235
BfmI CTRYAG 3 cut(s) 600, 982, 1701
BfuI GTATCC 1 cut(s) 691
BisI GCNGC 5 cut(s) 15, 18, 21, 501, 603
BlsI GCNGC 5 cut(s) 16, 19, 22, 502, 604
BmcAI AGTACT 1 cut(s) 1408
Bme1390I CCNGG 1 cut(s) 887
Bme18I GGWCC 1 cut(s) 1456
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 1456
BmiI GGNNCC 3 cut(s) 1066, 1176, 1457
BmrFI CCNGG 1 cut(s) 887
BmsI GCATC 7 cut(s) 195, 325, 703, 1228, 1454, 1486, 1696
BpiI GAAGAC 1 cut(s) 80
BplI GAGNNNNNCTC 2 cut(s) 1620, 1652
Bpu10I CCTNAGC 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 885, 1627
Bse1I ACTGG 3 cut(s) 808, 1176, 1314
Bse3DI GCAATG 1 cut(s) 1353
BseBI CCWGG 1 cut(s) 887
BseDI CCNNGG 2 cut(s) 885, 1627
BseGI GGATG 6 cut(s) 187, 918, 1003, 1131, 1213, 1318
BseMI GCAATG 1 cut(s) 1353
BseMII CTCAG 2 cut(s) 509, 744
BseNI ACTGG 3 cut(s) 808, 1176, 1314
BseRI GAGGAG 7 cut(s) 72, 75, 78, 81, 84, 87, 1029
BseXI GCAGC 4 cut(s) 4, 7, 512, 614
BsgI GTGCAG 1 cut(s) 1591
BshFI GGCC 5 cut(s) 155, 807, 1136, 1275, 1317
BsiHKCI CYCGRG 1 cut(s) 639
BslFI GGGAC 4 cut(s) 1182, 1469, 1539, 1680
BsmAI GTCTC 2 cut(s) 692, 1643
BsmFI GGGAC 4 cut(s) 1182, 1469, 1539, 1680
BsmI GAATGC 1 cut(s) 1376
BsnI GGCC 5 cut(s) 155, 807, 1136, 1275, 1317
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 1067
Bsp143I GATC 4 cut(s) 313, 1285, 1518, 1756
BspACI CCGC 2 cut(s) 7, 1556
BspANI GGCC 5 cut(s) 155, 807, 1136, 1275, 1317
BspCNI CTCAG 2 cut(s) 508, 743
BspLI GGNNCC 3 cut(s) 1066, 1176, 1457
BspMAI CTGCAG 2 cut(s) 604, 1705
BspPI GGATC 2 cut(s) 321, 1751
BspQI GCTCTTC 1 cut(s) 731
BsrDI GCAATG 1 cut(s) 1353
BsrI ACTGG 3 cut(s) 808, 1176, 1314
BssECI CCNNGG 2 cut(s) 885, 1627
BssMI GATC 4 cut(s) 313, 1285, 1518, 1756
BssNAI GTATAC 1 cut(s) 303
BssNI GRCGYC 1 cut(s) 762
Bst1107I GTATAC 1 cut(s) 303
Bst2UI CCWGG 1 cut(s) 887
Bst4CI ACNGT 7 cut(s) 686, 976, 986, 1007, 1406, 1469, 1654
Bst6I CTCTTC 1 cut(s) 731
BstACI GRCGYC 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 1266
BstDEI CTNAG 5 cut(s) 320, 495, 617, 730, 1568
BstF5I GGATG 6 cut(s) 187, 918, 1003, 1131, 1213, 1318
BstKTI GATC 4 cut(s) 316, 1288, 1521, 1759
BstMAI GTCTC 2 cut(s) 692, 1643
BstMBI GATC 4 cut(s) 313, 1285, 1518, 1756
BstMWI GCNNNNNNNGC 5 cut(s) 20, 152, 214, 223, 804
BstNI CCWGG 1 cut(s) 887
BstSCI CCNGG 1 cut(s) 885
BstSFI CTRYAG 3 cut(s) 600, 982, 1701
BstV1I GCAGC 4 cut(s) 4, 7, 512, 614
BstV2I GAAGAC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 1756
BstYI RGATCY 1 cut(s) 1756
BstZ17I GTATAC 1 cut(s) 303
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 5 cut(s) 155, 807, 1136, 1275, 1317
BtgZI GCGATG 2 cut(s) 218, 247
BtsCI GGATG 6 cut(s) 187, 918, 1003, 1131, 1213, 1318
BtsI GCAGTG 1 cut(s) 1668
BtsIMutI CAGTG 3 cut(s) 156, 815, 1668
Cac8I GCNNGC 1 cut(s) 1266
CaiI CAGNNNCTG 1 cut(s) 690
Cfr13I GGNCC 1 cut(s) 1456
CseI GACGC 1 cut(s) 206
Csp6I GTAC 3 cut(s) 882, 1407, 1507
CviAII CATG 5 cut(s) 253, 583, 788, 1375, 1710
CviQI GTAC 3 cut(s) 882, 1407, 1507
DdeI CTNAG 5 cut(s) 320, 495, 617, 730, 1568
DpnI GATC 4 cut(s) 315, 1287, 1520, 1758
DpnII GATC 4 cut(s) 313, 1285, 1518, 1756
DraI TTTAAA 1 cut(s) 1324
DraIII CACNNNGTG 1 cut(s) 932
DrdI GACNNNNNNGTC 1 cut(s) 1652
DseDI GACNNNNNNGTC 1 cut(s) 1652
EaeI YGGCCR 2 cut(s) 153, 1273
Eam1104I CTCTTC 1 cut(s) 731
EarI CTCTTC 1 cut(s) 731
Eco24I GRGCYC 1 cut(s) 1067
Eco32I GATATC 1 cut(s) 856
Eco47I GGWCC 1 cut(s) 1456
Eco57I CTGAAG 3 cut(s) 132, 862, 1572
Eco88I CYCGRG 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 885
EcoRV GATATC 1 cut(s) 856
EcoT22I ATGCAT 2 cut(s) 1376, 1711
EcoT38I GRGCYC 1 cut(s) 1067
FaeI CATG 5 cut(s) 256, 586, 791, 1378, 1713
FalI AAGNNNNNCTT 2 cut(s) 842, 874
FaqI GGGAC 4 cut(s) 1182, 1469, 1539, 1680
FatI CATG 5 cut(s) 252, 582, 787, 1374, 1709
FbaI TGATCA 1 cut(s) 1518
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 5 cut(s) 15, 18, 21, 501, 603
FokI GGATG 6 cut(s) 194, 925, 1010, 1138, 1220, 1325
FriOI GRGCYC 1 cut(s) 1067
Fsp4HI GCNGC 5 cut(s) 15, 18, 21, 501, 603
FspBI CTAG 2 cut(s) 704, 1235
GluI GCNGC 5 cut(s) 15, 18, 21, 501, 603
HaeIII GGCC 5 cut(s) 155, 807, 1136, 1275, 1317
HgaI GACGC 1 cut(s) 206
Hin1I GRCGYC 1 cut(s) 762
Hin1II CATG 5 cut(s) 256, 586, 791, 1378, 1713
HindIII AAGCTT 2 cut(s) 144, 1266
HinfI GANTC 3 cut(s) 390, 784, 949
HphI GGTGA 1 cut(s) 970
Hpy166II GTNNAC 4 cut(s) 303, 989, 1509, 1675
Hpy188I TCNGA 4 cut(s) 560, 733, 1162, 1628
Hpy188III TCNNGA 8 cut(s) 332, 639, 641, 710, 862, 1151, 1283, 1676
Hpy8I GTNNAC 4 cut(s) 303, 989, 1509, 1675
HpyAV CCTTC 4 cut(s) 476, 565, 886, 1412
HpyCH4III ACNGT 7 cut(s) 686, 976, 986, 1007, 1406, 1469, 1654
HpyCH4IV ACGT 2 cut(s) 762, 1505
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 152, 214, 223, 804
HpyF3I CTNAG 5 cut(s) 320, 495, 617, 730, 1568
HpySE526I ACGT 2 cut(s) 762, 1505
Hsp92I GRCGYC 1 cut(s) 762
Hsp92II CATG 5 cut(s) 256, 586, 791, 1378, 1713
Ksp22I TGATCA 1 cut(s) 1518
Kzo9I GATC 4 cut(s) 313, 1285, 1518, 1756
LguI GCTCTTC 1 cut(s) 731
LmnI GCTCC 2 cut(s) 526, 1070
Lsp1109I GCAGC 4 cut(s) 4, 7, 512, 614
LweI GCATC 7 cut(s) 195, 325, 703, 1228, 1454, 1486, 1696
MaeI CTAG 2 cut(s) 704, 1235
MaeII ACGT 2 cut(s) 762, 1505
MaeIII GTNAC 5 cut(s) 257, 550, 871, 976, 1532
MalI GATC 4 cut(s) 315, 1287, 1520, 1758
MboI GATC 4 cut(s) 313, 1285, 1518, 1756
MfeI CAATTG 2 cut(s) 361, 611
MflI RGATCY 1 cut(s) 1756
MhlI GDGCHC 1 cut(s) 1067
MlsI TGGCCA 2 cut(s) 155, 1275
MluNI TGGCCA 2 cut(s) 155, 1275
MmeI TCCRAC 1 cut(s) 1347
Mox20I TGGCCA 2 cut(s) 155, 1275
Mph1103I ATGCAT 2 cut(s) 1376, 1711
MscI TGGCCA 2 cut(s) 155, 1275
MseI TTAA 5 cut(s) 720, 1074, 1323, 1544, 1724
MslI CAYNNNNRTG 2 cut(s) 521, 1514
Msp20I TGGCCA 2 cut(s) 155, 1275
MspR9I CCNGG 1 cut(s) 887
MunI CAATTG 2 cut(s) 361, 611
Mva1269I GAATGC 1 cut(s) 1376
MvaI CCWGG 1 cut(s) 887
MwoI GCNNNNNNNGC 5 cut(s) 20, 152, 214, 223, 804
NdeII GATC 4 cut(s) 313, 1285, 1518, 1756
NlaIII CATG 5 cut(s) 256, 586, 791, 1378, 1713
NlaIV GGNNCC 3 cut(s) 1066, 1176, 1457
NmuCI GTSAC 3 cut(s) 257, 976, 1532
NsiI ATGCAT 2 cut(s) 1376, 1711
OliI CACNNNNGTG 1 cut(s) 521
PaeR7I CTCGAG 1 cut(s) 639
PciSI GCTCTTC 1 cut(s) 731
PctI GAATGC 1 cut(s) 1376
PfeI GAWTC 3 cut(s) 390, 784, 949
PkrI GCNGC 5 cut(s) 16, 19, 22, 502, 604
PshBI ATTAAT 1 cut(s) 1724
Psp6I CCWGG 1 cut(s) 885
PspGI CCWGG 1 cut(s) 885
PspN4I GGNNCC 3 cut(s) 1066, 1176, 1457
PspPI GGNCC 1 cut(s) 1456
PstI CTGCAG 2 cut(s) 604, 1705
PstNI CAGNNNCTG 1 cut(s) 690
PsuI RGATCY 1 cut(s) 1756
RsaI GTAC 3 cut(s) 883, 1408, 1508
RsaNI GTAC 3 cut(s) 882, 1407, 1507
RseI CAYNNNNRTG 2 cut(s) 521, 1514
SapI GCTCTTC 1 cut(s) 731
SaqAI TTAA 5 cut(s) 720, 1074, 1323, 1544, 1724
SatI GCNGC 5 cut(s) 15, 18, 21, 501, 603
Sau3AI GATC 4 cut(s) 313, 1285, 1518, 1756
Sau96I GGNCC 1 cut(s) 1456
ScaI AGTACT 1 cut(s) 1408
ScrFI CCNGG 1 cut(s) 887
SduI GDGCHC 1 cut(s) 1067
SfaNI GCATC 7 cut(s) 195, 325, 703, 1228, 1454, 1486, 1696
SfcI CTRYAG 3 cut(s) 600, 982, 1701
Sfr274I CTCGAG 1 cut(s) 639
SinI GGWCC 1 cut(s) 1456
SlaI CTCGAG 1 cut(s) 639
SmiMI CAYNNNNRTG 2 cut(s) 521, 1514
SmlI CTYRAG 2 cut(s) 141, 639
SmoI CTYRAG 2 cut(s) 141, 639
SpeI ACTAGT 1 cut(s) 703
SsiI CCGC 2 cut(s) 7, 1556
SspI AATATT 1 cut(s) 352
SspMI CTAG 2 cut(s) 704, 1235
StyD4I CCNGG 1 cut(s) 885
TaaI ACNGT 7 cut(s) 686, 976, 986, 1007, 1406, 1469, 1654
TaiI ACGT 2 cut(s) 765, 1508
TaqI TCGA 2 cut(s) 640, 891
TatI WGTACW 1 cut(s) 1406
TfiI GAWTC 3 cut(s) 390, 784, 949
Tru1I TTAA 5 cut(s) 720, 1074, 1323, 1544, 1724
Tru9I TTAA 5 cut(s) 720, 1074, 1323, 1544, 1724
TscAI CASTG 3 cut(s) 156, 815, 1668
TseFI GTSAC 3 cut(s) 257, 976, 1532
TseI GCWGC 5 cut(s) 14, 17, 20, 500, 602
Tsp45I GTSAC 3 cut(s) 257, 976, 1532
TspDTI ATGAA 7 cut(s) 80, 125, 584, 776, 1067, 1142, 1391
TspGWI ACGGA 2 cut(s) 227, 1057
TspRI CASTG 3 cut(s) 156, 815, 1668
VpaK11BI GGWCC 1 cut(s) 1456
VspI ATTAAT 1 cut(s) 1724
XapI RAATTY 3 cut(s) 413, 422, 865
XhoI CTCGAG 1 cut(s) 639
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 2 cut(s) 704, 1235
ZraI GACGTC 1 cut(s) 763
ZrmI AGTACT 1 cut(s) 1408
Zsp2I ATGCAT 2 cut(s) 1376, 1711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.