Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0004810

Physical Location & Seq

Genomic Coordinates Reverse (-)

22439914 .. 22443890

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1139700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2625 bp

ATGGACCCAACCGCCTCTCTCGCCAAAGCTTTGTTCAACAACACCAACAATCCGAAGCTCGCGTGGCACCTCTTCAAGCGCATCATCTCCTCCCCCACCTCCTCCTCATCCTCCTCCGATCTCCCCCTCCGCTCCCTCCCCGTCATTGCCCGTATCCTTATCGACTCCAAAATGCACCGCGAAATTGACAGCCTTCACCAGCTCCTCCTCCTCTCTCAACCCCTCGAAACCCTTCGCCCTTGCCTCGTTTCGCTCGTGCGGATCTTGGCCAAGTCGAATCTCCCTGATAAAGCCGTTGCCCATTTCAAATCCCTCCGCAGCCGCTTCCCTGATAAGCCCCCCTCTGTGTATTTGTATAATTTGCTTCTCGAGTCCTCTCTCAGGGAGAACAATGTAGATTTCGTCTTGTGGCTGTATAAGGATATGATCTTCTCCGGGATTAAGCCCGAAACTTTTACTTTTAACCTTTTGATTTGGGCATTGTGTGAATCGGATTGTTTGGATGATGCCCGCGAGGTGTTTGATAAAATGCGTGACAAGGGTTGTCAACCGAATGAGTACAGTGTTGGGATTTTGGTTCGCGGGTATTGTCGAGCTGGGCTTGCTGGCAGAGGTTTGGAGGTTTTGGATGAGGTGAGGAGTTGTAATGTTTTTCCGAATAAGGTTGTGTATAATACTTTGATTTCTAGCTTCTGTAAACAAGGAAGGACTGATGAGGCCGAGAAGTTGGTAGAGAGGATGAGAGAGGATGGATTGTTTCCGGATGCCGTTACTTTCAATTCTAGGATTTCGGCTCTTTGCAGTGCAGGGAAAATCCTTGAAGCTTCTAGAATATTTAGAGATATGCGTGTTGATGATCAAGGGTTGGGGCTGCCTCAACCTAATGTTGTAACATATAATTTGATGTTGCAAGGATTTTGCAAGGAAGGGATGCTAGAGGAAGCAGAGGCATTGCTCAAATCTATGGAAAAGGCTGGTGATTTTATTAATTTAGAGAGTTATAACATATGGTTGTTGGGTCTGGTCAGGAAAGGGAAGCTCTTAGAGGCACGATTGGTTCTTCAAGAGATGGTAGATAAAGGCATAGAACCCAGTATTTACTCATACAACATTTTGATAAATGGGTTATGTAAAAGCGGGATGCTCCGTGATGCAAGAATGGTGATGAGTCTAATGGAAAGAAAAAATATTTCCCCTGATACGGTGACCTACAGTACTTTACTTCATGGTTTCTGCAGTAAAGGTAAGGTAATTGAGGCCAACAATATCCTACATGAGATGATGACGAATAACTGCTTCCCAAATACTCATACTTGCAACACTTTGCTGCATAGCCTATGGAAGGAGGGAAGGACATCAGAAGCAGAGGAGCTTCTGAAAAAGATGAATGAGAGAGGTTATGGCTTAGATACTGTGACCTGCAATATTGTGATTGATGGTTTGTGCAAAGATGGGAAATTGGACAAAGCAATTGAAATTGTGAGCGGGATGTGGACTCATGGAAGTGCGGCTCTTGGAAACTTAGGGAACTCCTTTATTGGCCTGGTTGACGATAGTAATAAAGGGAAGAAATGCAGCCCTGATTTGATCACGTATTCAACCATAATTGGTGGGTTATGCAAGGCTGGGAGACTTGATGAAGCGAAGAAGAAGTTCGTGGAGATGTTGGGGAAAAATTTGCCCCCTGATTCAGTGATTTATGATATGTTTATACGTAGTTTTTGTGAGCAAGGAAGGATATCATCTGCATTCCGGGTGTTGAAGGACATGGAGAAGAAAGGTTGCAACAAGAGCATTCAAACTTATAATTCACTAATCCTGGGATTAGGGAGTAAAAAGCAAATATTTGAAATATATGGACTGATGGATGAGATGAGAGAAAGAGGAGTCCCCCCTGATGTGCGCACTTATAATAATATGATGAAAAGTCTCTGTGAAGGAGAGAGAGTCAAAGATGCCACATCTCTTTTAGATGAAATGCTGCAGAAGGGCATATCCCCGGACATATCTACCTTCAGAATATTGATTGAAGCTTTCTGCAAGGGATGTGATTTTGGAGCCGCGCATGAGGTATTCGACATTGCTTTAAGTGTATGTGGCCACAAGGAAGCTTTGTATAGTTTGATGTTCAATGAGTTGCTCGCTGGAGGGGAAATATGGAATGCTAAAGAGCTATTTGAAGTCGCATTAGACAGGTATTTTTATGTTGGGAATTTTAACTACAAAGATCTCATTGACAGACTTTGCAAGGATGAAAAGTTAGAGGATGCTAGCAGCATTCTTCTCACGATGAAGAATAAAGGATACGGATTTGATCCAGCATCATTCCTGCCCGTAATTGATGGCTTAGGTAAAAGGGGAAATAAGCATGAGGCGGATGAACTTGCAGAGAGAATGATGGAAATGGAAACAGAGGGTAGGGTAACAGATAAGGTTTACCGAAATGAGAGGGAAACAAGTAGTCGAAAACCAAATAACACCTGCAGAAGTGATTGGCAGACCATAGTGCACAGAGATGATGGCAGTGGAATAGCAATGAAAACCCTCAAGCGGGTACAGAAAGGCTGGGGTCGAGAGAATCTAACGAGTTTGCAGCCCCACACAAATGAATTTATCGAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

875

Amino Acids

98.53

Weight (kDa)

6.58

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	114 - 162	6.2e-07	PPR repeat family
PPR_long	PF17177	120 - 254	4.2e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	146 - 178	1.4e-06	PPR repeat
PPR_2	PF13041	149 - 198	9e-14	PPR repeat family
PPR	PF01535	152 - 182	3e-06	PPR repeat
PPR_3	PF13812	208 - 265	3.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	216 - 248	4e-13	PPR repeat
PPR_2	PF13041	219 - 267	9.4e-15	PPR repeat family
PPR	PF01535	222 - 252	2.4e-09	PPR repeat
PPR_1	PF12854	250 - 283	1.6e-08	PPR repeat
PPR_1	PF12854	293 - 323	3.9e-11	PPR repeat
PPR_2	PF13041	294 - 342	7e-12	PPR repeat family
PPR	PF01535	297 - 326	9.4e-09	PPR repeat
PPR_2	PF13041	333 - 378	6.5e-13	PPR repeat family
PPR_3	PF13812	353 - 409	5.1e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	360 - 393	1e-09	PPR repeat
PPR_2	PF13041	364 - 412	2.8e-17	PPR repeat family
PPR	PF01535	367 - 397	8.6e-07	PPR repeat
TPR_24	PF23276	388 - 493	1.3e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	391 - 444	2.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	395 - 427	2.1e-10	PPR repeat
PPR_2	PF13041	400 - 446	2.9e-12	PPR repeat family
PPR	PF01535	402 - 432	4.7e-06	PPR repeat
PPR_2	PF13041	434 - 483	1.2e-12	PPR repeat family
PPR_1	PF12854	466 - 497	8.7e-08	PPR repeat
PPR_1	PF12854	524 - 555	5.1e-13	PPR repeat
PPR_2	PF13041	527 - 567	1.5e-08	PPR repeat family
PPR	PF01535	530 - 559	2e-06	PPR repeat
PPR_1	PF12854	558 - 591	1.4e-07	PPR repeat
PPR_2	PF13041	562 - 609	9.2e-12	PPR repeat family
PPR_long	PF17177	580 - 681	2.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	598 - 645	2.4e-12	PPR repeat family
PPR_3	PF13812	621 - 679	2.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	628 - 660	1.6e-08	PPR repeat
PPR_2	PF13041	632 - 681	2.4e-15	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004810)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17140 AT2G17140
fragaria_vesca	FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640 FvH4_2g16640
malus_domestica	MD05G1134600.v1.1 MD05G1134700.v1.1 MD10G1139700.v1.1
prunus_persica	Prupe.8G178500_v2.0.a1 Prupe.8G178500_v2.0.a1
pyrus_communis	pycom05g13140 pycom10g11860
rosa_chinensis	RchiOBHm_Chr6g0280761
rosa_laevigata	RLG00000013030
rosa_multiflora	Rmu_co8435227.1_g000001 Rmu_sc0042093.1_g000001 Rmu_sc0042110.1_g000001
rosa_roxburghii	Rroxscaffold_1G00044300 Rroxscaffold_6G00391320 Rroxscaffold_6G00391330 Rroxscaffold_7G00187700
rosa_rugosa	Rorug06G0134300
rosa_samantha	Rh6AG247000 Rh6BG249100 Rh6CG250400 Rh6DG241800
rosa_wichuraiana	Rw6G021390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	1002, 1806, 1911
AarI	CACCTGC	1 cut(s)	2489
Acc16I	TGCGCA	1 cut(s)	1904
Acc36I	ACCTGC	2 cut(s)	1427, 2489
AccB1I	GGYRCC	1 cut(s)	66
AccBSI	CCGCTC	2 cut(s)	132, 1485
AccII	CGCG	5 cut(s)	62, 180, 513, 582, 2063
AccIII	TCCGGA	1 cut(s)	760
AclWI	GGATC	2 cut(s)	269, 2309
AcoI	YGGCCR	2 cut(s)	267, 2098
AcsI	RAATTY	3 cut(s)	1675, 2212, 2609
AcuI	CTGAAG	1 cut(s)	1999
AfaI	GTAC	3 cut(s)	560, 1216, 2556
AfiI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
AjnI	CCWGG	2 cut(s)	1542, 1818
AjuI	GAANNNNNNNTTGG	2 cut(s)	17, 49
Alw21I	GWGCWC	1 cut(s)	2511
Alw26I	GTCTC	2 cut(s)	1624, 1934
Alw44I	GTGCAC	1 cut(s)	2507
AlwI	GGATC	2 cut(s)	269, 2309
Ama87I	CYCGRG	1 cut(s)	368
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	5 cut(s)	267, 717, 1257, 1540, 2098
ApaLI	GTGCAC	1 cut(s)	2507
ApeKI	GCWGC	7 cut(s)	318, 871, 1327, 1575, 1981, 2274, 2593
ApoI	RAATTY	3 cut(s)	1675, 2212, 2609
AseI	ATTAAT	1 cut(s)	987
Asp700I	GAANNNNTTC	2 cut(s)	231, 1652
AspLEI	GCGC	3 cut(s)	81, 1905, 2065
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	3 cut(s)	436, 1754, 2000
AsuHPI	GGTGA	5 cut(s)	188, 646, 989, 1174, 1216
AsuNHI	GCTAGC	1 cut(s)	2270
AvaI	CYCGRG	1 cut(s)	368
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	2511
BalI	TGGCCA	2 cut(s)	269, 2100
BanI	GGYRCC	1 cut(s)	66
BauI	CACGAG	1 cut(s)	254
Bbv12I	GWGCWC	1 cut(s)	2511
BbvI	GCAGC	7 cut(s)	330, 858, 1314, 1587, 1968, 2286, 2605
BccI	CCATC	8 cut(s)	743, 1063, 1430, 1445, 1858, 2336, 2392, 2513
BceAI	ACGGC	2 cut(s)	278, 752
BciT130I	CCWGG	2 cut(s)	1544, 1820
BciVI	GTATCC	2 cut(s)	164, 2297
BclI	TGATCA	2 cut(s)	856, 1587
BcnI	CCSGG	3 cut(s)	436, 1754, 2000
BcoDI	GTCTC	2 cut(s)	1624, 1934
BfaI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
BfmI	CTRYAG	4 cut(s)	1210, 1234, 1982, 2482
BfuAI	ACCTGC	2 cut(s)	1427, 2489
BfuI	GTATCC	2 cut(s)	164, 2297
BglII	AGATCT	1 cut(s)	2227
BmcAI	AGTACT	1 cut(s)	1216
Bme1390I	CCNGG	5 cut(s)	436, 1544, 1754, 1820, 2000
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	6, 68, 2059
BmrFI	CCNGG	5 cut(s)	436, 1544, 1754, 1820, 2000
BmrI	ACTGGG	1 cut(s)	1086
BmsI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
BmtI	GCTAGC	1 cut(s)	2274
BmuI	ACTGGG	1 cut(s)	1086
BpmI	CTGGAG	1 cut(s)	2166
Bpu10I	CCTNAGC	1 cut(s)	2347
BpuEI	CTTGAG	1 cut(s)	2531
BpuMI	CCSGG	3 cut(s)	436, 1754, 2000
BsaAI	YACGTR	2 cut(s)	1593, 1715
BsaJI	CCNNGG	2 cut(s)	1819, 1998
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	2 cut(s)	1932, 1962
Bsc4I	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
Bse1I	ACTGG	1 cut(s)	1092
Bse3DI	GCAATG	4 cut(s)	144, 950, 2079, 2541
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	2 cut(s)	1544, 1820
BseDI	CCNNGG	2 cut(s)	1819, 1998
BseLI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
BseMI	GCAATG	4 cut(s)	144, 950, 2079, 2541
BseMII	CTCAG	1 cut(s)	394
BseNI	ACTGG	1 cut(s)	1092
BseSI	GKGCMC	1 cut(s)	2511
BseXI	GCAGC	7 cut(s)	330, 858, 1314, 1587, 1968, 2286, 2605
BseYI	CCCAGC	3 cut(s)	596, 1625, 2565
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	5 cut(s)	62, 180, 513, 582, 2063
BshFI	GGCC	5 cut(s)	269, 719, 1259, 1542, 2100
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	2511
BsiHKCI	CYCGRG	1 cut(s)	368
BsiSI	CCGG	4 cut(s)	435, 761, 1753, 2000
BslFI	GGGAC	1 cut(s)	1874
BslI	CCNNNNNNNGG	5 cut(s)	381, 1201, 1342, 2550, 2551
BsmAI	GTCTC	2 cut(s)	1624, 1934
BsmFI	GGGAC	1 cut(s)	1874
BsmI	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
BsnI	GGCC	5 cut(s)	269, 719, 1259, 1542, 2100
BsoBI	CYCGRG	1 cut(s)	368
Bsp1286I	GDGCHC	1 cut(s)	2511
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
BspANI	GGCC	5 cut(s)	269, 719, 1259, 1542, 2100
BspCNI	CTCAG	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	760
BspFNI	CGCG	5 cut(s)	62, 180, 513, 582, 2063
BspLI	GGNNCC	3 cut(s)	6, 68, 2059
BspMAI	CTGCAG	3 cut(s)	1238, 1986, 2486
BspMI	ACCTGC	2 cut(s)	1427, 2489
BspOI	GCTAGC	1 cut(s)	2274
BspPI	GGATC	2 cut(s)	269, 2309
BspT107I	GGYRCC	1 cut(s)	66
BsrBI	CCGCTC	2 cut(s)	132, 1485
BsrDI	GCAATG	4 cut(s)	144, 950, 2079, 2541
BsrI	ACTGG	1 cut(s)	1092
BssECI	CCNNGG	2 cut(s)	1819, 1998
BssMI	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
BssSI	CACGAG	1 cut(s)	254
Bst2BI	CACGAG	1 cut(s)	254
Bst2UI	CCWGG	2 cut(s)	1544, 1820
Bst4CI	ACNGT	4 cut(s)	563, 1204, 1214, 1414
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	2 cut(s)	1593, 1715
BstC8I	GCNNGC	6 cut(s)	60, 511, 603, 607, 2142, 2272
BstDEI	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
BstEII	GGTNACC	1 cut(s)	1204
BstENI	CCTNNNNNAGG	2 cut(s)	379, 1340
BstFNI	CGCG	5 cut(s)	62, 180, 513, 582, 2063
BstHHI	GCGC	3 cut(s)	81, 1905, 2065
BstKTI	GATC	7 cut(s)	121, 264, 429, 859, 1590, 2230, 2317
BstMAI	GTCTC	2 cut(s)	1624, 1934
BstMBI	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 64, 602, 1791
BstNI	CCWGG	2 cut(s)	1544, 1820
BstPI	GGTNACC	1 cut(s)	1204
BstSCI	CCNGG	5 cut(s)	434, 1542, 1752, 1818, 1998
BstSFI	CTRYAG	4 cut(s)	1210, 1234, 1982, 2482
BstSLI	GKGCMC	1 cut(s)	2511
BstSNI	TACGTA	1 cut(s)	1715
BstUI	CGCG	5 cut(s)	62, 180, 513, 582, 2063
BstV1I	GCAGC	7 cut(s)	330, 858, 1314, 1587, 1968, 2286, 2605
BstX2I	RGATCY	2 cut(s)	261, 2227
BstYI	RGATCY	2 cut(s)	261, 2227
BsuI	GTATCC	2 cut(s)	164, 2297
BsuRI	GGCC	5 cut(s)	269, 719, 1259, 1542, 2100
BtsI	GCAGTG	2 cut(s)	808, 2530
BtsIMutI	CAGTG	4 cut(s)	568, 808, 1698, 2530
BveI	ACCTGC	2 cut(s)	1427, 2489
Cac8I	GCNNGC	6 cut(s)	60, 511, 603, 607, 2142, 2272
CfoI	GCGC	3 cut(s)	81, 1905, 2065
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	3 cut(s)	559, 1215, 2555
CviAII	CATG	6 cut(s)	1226, 1274, 1499, 1768, 2066, 2369
CviQI	GTAC	3 cut(s)	559, 1215, 2555
DdeI	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
DpnI	GATC	7 cut(s)	120, 263, 428, 858, 1589, 2229, 2316
DpnII	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
EaeI	YGGCCR	2 cut(s)	267, 2098
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	2390
Eco105I	TACGTA	1 cut(s)	1715
Eco32I	GATATC	1 cut(s)	1740
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	1 cut(s)	1999
Eco88I	CYCGRG	1 cut(s)	368
Eco91I	GGTNACC	1 cut(s)	1204
EcoNI	CCTNNNNNAGG	2 cut(s)	379, 1340
EcoO65I	GGTNACC	1 cut(s)	1204
EcoRII	CCWGG	2 cut(s)	1542, 1818
EcoRV	GATATC	1 cut(s)	1740
FaeI	CATG	6 cut(s)	1229, 1277, 1502, 1771, 2069, 2372
FaqI	GGGAC	1 cut(s)	1874
FatI	CATG	6 cut(s)	1225, 1273, 1498, 1767, 2065, 2368
FauI	CCCGC	5 cut(s)	518, 575, 1130, 1478, 2544
FauNDI	CATATG	1 cut(s)	1007
FbaI	TGATCA	2 cut(s)	856, 1587
FspAI	RTGCGCAY	1 cut(s)	1904
FspBI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
FspI	TGCGCA	1 cut(s)	1904
GlaI	GCGC	3 cut(s)	80, 1904, 2064
GsaI	CCCAGC	3 cut(s)	600, 1629, 2569
GsuI	CTGGAG	1 cut(s)	2166
HaeIII	GGCC	5 cut(s)	269, 719, 1259, 1542, 2100
HapII	CCGG	4 cut(s)	435, 761, 1753, 2000
HhaI	GCGC	3 cut(s)	81, 1905, 2065
Hin1II	CATG	6 cut(s)	1229, 1277, 1502, 1771, 2069, 2372
Hin6I	GCGC	3 cut(s)	79, 1903, 2063
HinP1I	GCGC	3 cut(s)	79, 1903, 2063
HincII	GTYRAC	2 cut(s)	548, 1549
HindII	GTYRAC	2 cut(s)	548, 1549
HindIII	AAGCTT	4 cut(s)	27, 822, 2031, 2109
HpaII	CCGG	4 cut(s)	435, 761, 1753, 2000
HphI	GGTGA	5 cut(s)	188, 646, 989, 1174, 1216
Hpy166II	GTNNAC	6 cut(s)	548, 698, 1494, 1549, 2437, 2509
Hpy188I	TCNGA	7 cut(s)	54, 118, 493, 657, 1360, 1377, 2018
Hpy188III	TCNNGA	7 cut(s)	368, 761, 828, 1027, 1064, 2287, 2573
Hpy8I	GTNNAC	6 cut(s)	548, 698, 1494, 1549, 2437, 2509
HpyCH4III	ACNGT	4 cut(s)	563, 1204, 1214, 1414
HpyCH4IV	ACGT	2 cut(s)	1592, 1714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 64, 602, 1791
HpyF3I	CTNAG	5 cut(s)	380, 1042, 1405, 1522, 2347
HpySE526I	ACGT	2 cut(s)	1592, 1714
Hsp92II	CATG	6 cut(s)	1229, 1277, 1502, 1771, 2069, 2372
HspAI	GCGC	3 cut(s)	79, 1903, 2063
Kpn2I	TCCGGA	1 cut(s)	760
Ksp22I	TGATCA	2 cut(s)	856, 1587
Kzo9I	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
LmnI	GCTCC	5 cut(s)	137, 207, 1149, 1369, 2057
Lsp1109I	GCAGC	7 cut(s)	330, 858, 1314, 1587, 1968, 2286, 2605
LweI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
MaeI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
MaeII	ACGT	2 cut(s)	1592, 1714
MaeIII	GTNAC	6 cut(s)	533, 769, 889, 1204, 1414, 2422
MalI	GATC	7 cut(s)	120, 263, 428, 858, 1589, 2229, 2316
MbiI	CCGCTC	2 cut(s)	132, 1485
MboI	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
MboII	GAAGA	9 cut(s)	64, 421, 1052, 1579, 1657, 1660, 1786, 2273, 2305
MfeI	CAATTG	1 cut(s)	1470
MflI	RGATCY	2 cut(s)	261, 2227
MhlI	GDGCHC	1 cut(s)	2511
MlsI	TGGCCA	2 cut(s)	269, 2100
MluNI	TGGCCA	2 cut(s)	269, 2100
MlyI	GAGTC	6 cut(s)	158, 380, 1177, 1489, 1896, 1956
Mox20I	TGGCCA	2 cut(s)	269, 2100
MroI	TCCGGA	1 cut(s)	760
MroXI	GAANNNNTTC	2 cut(s)	231, 1652
MscI	TGGCCA	2 cut(s)	269, 2100
MseI	TTAA	5 cut(s)	441, 462, 987, 2087, 2217
MslI	CAYNNNNRTG	3 cut(s)	1503, 2514, 2604
Msp20I	TGGCCA	2 cut(s)	269, 2100
MspI	CCGG	4 cut(s)	435, 761, 1753, 2000
MspR9I	CCNGG	5 cut(s)	436, 1544, 1754, 1820, 2000
MunI	CAATTG	1 cut(s)	1470
Mva1269I	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
MvaI	CCWGG	2 cut(s)	1544, 1820
MvnI	CGCG	5 cut(s)	62, 180, 513, 582, 2063
MwoI	GCNNNNNNNGC	4 cut(s)	20, 64, 602, 1791
NciI	CCSGG	3 cut(s)	436, 1754, 2000
NdeI	CATATG	1 cut(s)	1007
NdeII	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
NheI	GCTAGC	1 cut(s)	2270
NlaIII	CATG	6 cut(s)	1229, 1277, 1502, 1771, 2069, 2372
NlaIV	GGNNCC	3 cut(s)	6, 68, 2059
NmeAIII	GCCGAG	1 cut(s)	745
NmuCI	GTSAC	3 cut(s)	533, 1204, 1414
NsbI	TGCGCA	1 cut(s)	1904
PaeR7I	CTCGAG	1 cut(s)	368
PaqCI	CACCTGC	1 cut(s)	2489
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PctI	GAATGC	4 cut(s)	1748, 1794, 2167, 2277
PdmI	GAANNNNTTC	2 cut(s)	231, 1652
PfeI	GAWTC	4 cut(s)	277, 488, 1688, 2578
PfoI	TCCNGGA	1 cut(s)	434
PleI	GAGTC	6 cut(s)	158, 379, 1176, 1489, 1895, 1955
PpsI	GAGTC	6 cut(s)	158, 379, 1176, 1489, 1895, 1955
Ppu21I	YACGTR	2 cut(s)	1593, 1715
PshBI	ATTAAT	1 cut(s)	987
PsiI	TTATAA	3 cut(s)	1002, 1806, 1911
Psp6I	CCWGG	2 cut(s)	1542, 1818
PspEI	GGTNACC	1 cut(s)	1204
PspFI	CCCAGC	3 cut(s)	596, 1625, 2565
PspGI	CCWGG	2 cut(s)	1542, 1818
PspN4I	GGNNCC	3 cut(s)	6, 68, 2059
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	3 cut(s)	1238, 1986, 2486
PsuI	RGATCY	2 cut(s)	261, 2227
RsaI	GTAC	3 cut(s)	560, 1216, 2556
RsaNI	GTAC	3 cut(s)	559, 1215, 2555
RseI	CAYNNNNRTG	3 cut(s)	1503, 2514, 2604
SaqAI	TTAA	5 cut(s)	441, 462, 987, 2087, 2217
Sau3AI	GATC	7 cut(s)	118, 261, 426, 856, 1587, 2227, 2314
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	1216
SchI	GAGTC	6 cut(s)	158, 380, 1177, 1489, 1896, 1956
ScrFI	CCNGG	5 cut(s)	436, 1544, 1754, 1820, 2000
SduI	GDGCHC	1 cut(s)	2511
SfaNI	GCATC	9 cut(s)	90, 496, 754, 921, 1131, 1141, 1945, 2257, 2330
SfcI	CTRYAG	4 cut(s)	1210, 1234, 1982, 2482
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	368
SmiMI	CAYNNNNRTG	3 cut(s)	1503, 2514, 2604
SmlI	CTYRAG	2 cut(s)	368, 2546
SmoI	CTYRAG	2 cut(s)	368, 2546
SnaBI	TACGTA	1 cut(s)	1715
SspI	AATATT	6 cut(s)	834, 1189, 1426, 1845, 2022, 2621
SspMI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
StyD4I	CCNGG	5 cut(s)	434, 1542, 1752, 1818, 1998
TaaI	ACNGT	4 cut(s)	563, 1204, 1214, 1414
TaiI	ACGT	2 cut(s)	1595, 1717
TaqI	TCGA	9 cut(s)	162, 225, 275, 369, 592, 2076, 2464, 2572, 2616
TatI	WGTACW	2 cut(s)	558, 1214
TauI	GCSGC	3 cut(s)	324, 1511, 2063
TfiI	GAWTC	4 cut(s)	277, 488, 1688, 2578
Tru1I	TTAA	5 cut(s)	441, 462, 987, 2087, 2217
Tru9I	TTAA	5 cut(s)	441, 462, 987, 2087, 2217
TscAI	CASTG	4 cut(s)	568, 808, 1698, 2530
TseFI	GTSAC	3 cut(s)	533, 1204, 1414
TseI	GCWGC	7 cut(s)	318, 871, 1327, 1575, 1981, 2274, 2593
Tsp45I	GTSAC	3 cut(s)	533, 1204, 1414
TspGWI	ACGGA	2 cut(s)	1136, 2322
TspRI	CASTG	4 cut(s)	568, 808, 1698, 2530
VneI	GTGCAC	1 cut(s)	2507
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	1 cut(s)	987
XagI	CCTNNNNNAGG	2 cut(s)	379, 1340
XapI	RAATTY	3 cut(s)	1675, 2212, 2609
XbaI	TCTAGA	1 cut(s)	827
XhoI	CTCGAG	1 cut(s)	368
XmnI	GAANNNNTTC	2 cut(s)	231, 1652
XspI	CTAG	5 cut(s)	687, 783, 828, 935, 2271
ZrmI	AGTACT	1 cut(s)	1216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.