Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011535

Physical Location & Seq

Genomic Coordinates Forward (+)

45055359 .. 45056077

Gene Structure 719 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1323400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGAAGGTTCCGTAGCCACTGCCAGCGCCGGGAGAGCGATGATGAACGGCGGAGATTTGTCGAGGAGATTTTCTGGCCGGCCAAGTCCGAAGAGGGGTCAGGTGAAGATGGGGATCGTGGTTGGATTAGCCAACTCTGTGGCTTCCATCTTCAATCCTCACGGCTCATCACTGCACAGGGTTCAGCTAGTAAATCCCCTTTCTCATGAAGAAGTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

74

Amino Acids

7.66

Weight (kDa)

11.34

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04381
malus_domestica	MD05G1323400.v1.1 MD10G1301200.v1.1
prunus_persica	Prupe.4G039100_v2.0.a1 Prupe.4G039200_v2.0.a1
pyrus_communis	pycom05g29770 pycom05g29780
rosa_chinensis	RchiOBHm_Chr5g0006771 RchiOBHm_Chr5g0006781 RchiOBHm_Chr5g0006791 RchiOBHm_Chr5g0006801 RchiOBHm_Chr5g0006811
rosa_laevigata	RLG00000031430
rosa_roxburghii	Rroxscaffold_1G00069240 Rroxscaffold_1G00069260
rosa_rugosa	Rorug04G0424600
rosa_samantha	Rh5BG051200 Rh5BG051300 Rh5CG059800 Rh5DG050400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	76, 80
AfiI	CCNNNNNNNGG	2 cut(s)	30, 95
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	1 cut(s)	187
AluI	AGCT	1 cut(s)	187
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	2 cut(s)	76, 80
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	115
BccI	CCATC	2 cut(s)	103, 155
BceAI	ACGGC	2 cut(s)	64, 178
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	188
BfoI	RGCGCY	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	31
BsaBI	GATNNNNATC	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 95
Bse118I	RCCGGY	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	30, 95
BseRI	GAGGAG	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	78, 82
BsiSI	CCGG	2 cut(s)	30, 79
BslI	CCNNNNNNNGG	2 cut(s)	30, 95
BsnI	GGCC	2 cut(s)	78, 82
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	2 cut(s)	78, 82
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	78
BssAI	RCCGGY	1 cut(s)	78
BssMI	GATC	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	2 cut(s)	25, 80
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	29
BstXI	CCANNNNNNTGG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	78, 82
BtgZI	GCGATG	1 cut(s)	53
BtsI	GCAGTG	2 cut(s)	18, 170
BtsIMutI	CAGTG	2 cut(s)	18, 170
Cac8I	GCNNGC	2 cut(s)	25, 80
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	78
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	7 cut(s)	17, 78, 82, 131, 143, 165, 187
CviKI_1	RGCY	7 cut(s)	17, 78, 82, 131, 143, 165, 187
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	2 cut(s)	76, 80
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	1 cut(s)	66
FaeI	CATG	1 cut(s)	209
FaiI	YATR	1 cut(s)	207
FatI	CATG	1 cut(s)	205
FseI	GGCCGGCC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	2 cut(s)	78, 82
HapII	CCGG	2 cut(s)	30, 79
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HpaII	CCGG	2 cut(s)	30, 79
HphI	GGTGA	1 cut(s)	115
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
Hsp92II	CATG	1 cut(s)	209
HspAI	GCGC	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	114
LpnPI	CCDG	6 cut(s)	37, 43, 60, 86, 92, 163
MaeI	CTAG	1 cut(s)	188
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	4 cut(s)	103, 118, 142, 221
MluCI	AATT	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	3 cut(s)	57, 87, 168
MroNI	GCCGGC	1 cut(s)	78
MspI	CCGG	2 cut(s)	30, 79
MspR9I	CCNGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	35
NaeI	GCCGGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	209
NlaIV	GGNNCC	1 cut(s)	10
PagI	TCATGA	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	10
RigI	GGCCGGCC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	31
SetI	ASST	3 cut(s)	10, 105, 189
Sse9I	AATT	1 cut(s)	217
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	62
TasI	AATT	1 cut(s)	217
TscAI	CASTG	2 cut(s)	25, 177
TspDTI	ATGAA	2 cut(s)	59, 222
TspRI	CASTG	2 cut(s)	25, 177
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.