Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0011535

Physical Location & Seq

Genomic Coordinates Reverse (-)

4236491 .. 4258778

Gene Structure 22288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG050400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAGCGTTCCACAGCCACTGCCACTTCCGGGAGAGCAATGATGAACGCCAGTGACTTTTCACGGCGGTTTCCTGCGGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAATTCTGTGGCTTCCATTTTCACTCCTCAGCGTCCAGCCATGTACAAGCAGCATTCTATGGGAGCATTACGGGCATGTGACTTATGTGGACTTGTTCATAGCATGCAGGAAGTCAGGAACCAAGAATTTAAAAGGGTTAAAATTGCCCTACTTCAGTACTTTAGGCGCCTGATTAAAAGTCCGGAGAAGTTATCACAGATGAAAAGTTCCACAGCCACTGCCACTTCCGGGAGAGGAATGACGAACGCCGGTGACTTTTCGCGGCGGTTTCCTTCGGGGCGCCCTGTTCCCAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAACTCAGTTGCTTCCATCTTCACTCCTCAGCGTCCAGCCATGTACAAGCAGCATTCTTCTGACTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.52

Weight (kDa)

11.51

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04381
malus_domestica	MD05G1323400.v1.1 MD10G1301200.v1.1
prunus_persica	Prupe.4G039100_v2.0.a1 Prupe.4G039200_v2.0.a1
pyrus_communis	pycom05g29770 pycom05g29780
rosa_chinensis	RchiOBHm_Chr5g0006771 RchiOBHm_Chr5g0006781 RchiOBHm_Chr5g0006791 RchiOBHm_Chr5g0006801 RchiOBHm_Chr5g0006811
rosa_laevigata	RLG00000031430
rosa_roxburghii	Rroxscaffold_1G00069240 Rroxscaffold_1G00069260
rosa_rugosa	Rorug04G0424600
rosa_samantha	Rh5BG051200 Rh5BG051300 Rh5CG059800 Rh5DG050400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	81, 300, 414
AccII	CGCG	1 cut(s)	397
AccIII	TCCGGA	1 cut(s)	316
AciI	CCGC	4 cut(s)	67, 77, 397, 400
AcoI	YGGCCR	2 cut(s)	132, 465
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	3 cut(s)	82, 301, 415
AfaI	GTAC	3 cut(s)	179, 293, 512
AfiI	CCNNNNNNNGG	4 cut(s)	30, 98, 363, 431
AlwNI	CAGNNNCTG	2 cut(s)	20, 353
Aor13HI	TCCGGA	1 cut(s)	316
AoxI	GGCC	2 cut(s)	132, 465
ApeKI	GCWGC	2 cut(s)	184, 517
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	3 cut(s)	84, 303, 417
AsuC2I	CCSGG	2 cut(s)	31, 364
AsuHPI	GGTGA	1 cut(s)	398
BalI	TGGCCA	2 cut(s)	134, 467
BanI	GGYRCC	3 cut(s)	81, 300, 414
BbvCI	CCTCAGC	2 cut(s)	162, 495
BbvI	GCAGC	2 cut(s)	196, 529
BccI	CCATC	3 cut(s)	106, 439, 491
BceAI	ACGGC	1 cut(s)	80
BcnI	CCSGG	2 cut(s)	31, 364
BfoI	RGCGCY	3 cut(s)	85, 304, 418
BisI	GCNGC	3 cut(s)	185, 398, 518
BlsI	GCNGC	3 cut(s)	186, 399, 519
BmcAI	AGTACT	1 cut(s)	293
Bme1390I	CCNGG	2 cut(s)	31, 364
BmiI	GGNNCC	4 cut(s)	83, 254, 302, 416
BmrFI	CCNGG	2 cut(s)	31, 364
Bpu10I	CCTNAGC	2 cut(s)	162, 495
BpuMI	CCSGG	2 cut(s)	31, 364
BsaHI	GRCGYC	3 cut(s)	82, 301, 415
BsaWI	WCCGGW	1 cut(s)	316
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 98, 363, 431
Bse118I	RCCGGY	1 cut(s)	383
Bse1I	ACTGG	3 cut(s)	51, 135, 468
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	316
BseLI	CCNNNNNNNGG	4 cut(s)	30, 98, 363, 431
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	3 cut(s)	176, 486, 509
BseNI	ACTGG	3 cut(s)	51, 135, 468
BseRI	GAGGAG	2 cut(s)	150, 483
BseXI	GCAGC	2 cut(s)	196, 529
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	2 cut(s)	134, 467
BshNI	GGYRCC	3 cut(s)	81, 300, 414
BsiSI	CCGG	4 cut(s)	30, 317, 363, 384
BslFI	GGGAC	2 cut(s)	141, 474
BslI	CCNNNNNNNGG	4 cut(s)	30, 98, 363, 431
BsmFI	GGGAC	2 cut(s)	141, 474
BsmI	GAATGC	2 cut(s)	187, 520
BsnI	GGCC	2 cut(s)	134, 467
Bsp13I	TCCGGA	1 cut(s)	316
Bsp1407I	TGTACA	2 cut(s)	177, 510
BspACI	CCGC	4 cut(s)	67, 77, 397, 400
BspANI	GGCC	2 cut(s)	134, 467
BspCNI	CTCAG	3 cut(s)	175, 485, 508
BspEI	TCCGGA	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	397
BspLI	GGNNCC	4 cut(s)	83, 254, 302, 416
BspT107I	GGYRCC	3 cut(s)	81, 300, 414
BsrDI	GCAATG	1 cut(s)	45
BsrFI	RCCGGY	1 cut(s)	383
BsrGI	TGTACA	2 cut(s)	177, 510
BsrI	ACTGG	3 cut(s)	51, 135, 468
BssAI	RCCGGY	1 cut(s)	383
BssNI	GRCGYC	3 cut(s)	82, 301, 415
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	3 cut(s)	82, 301, 415
BstAUI	TGTACA	2 cut(s)	177, 510
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	162, 472, 495
BstFNI	CGCG	1 cut(s)	397
BstH2I	RGCGCY	3 cut(s)	85, 304, 418
BstHHI	GCGC	3 cut(s)	84, 303, 417
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	2 cut(s)	213, 241
BstSCI	CCNGG	2 cut(s)	29, 362
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	2 cut(s)	196, 529
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	2 cut(s)	134, 467
BtsI	GCAGTG	2 cut(s)	18, 351
BtsIMutI	CAGTG	3 cut(s)	18, 58, 351
Cac8I	GCNNGC	1 cut(s)	239
CaiI	CAGNNNCTG	2 cut(s)	20, 353
CfoI	GCGC	3 cut(s)	84, 303, 417
Cfr10I	RCCGGY	1 cut(s)	383
CseI	GACGC	2 cut(s)	155, 488
Csp6I	GTAC	3 cut(s)	178, 292, 511
CviAII	CATG	4 cut(s)	175, 210, 238, 508
CviJI	RGCY	7 cut(s)	17, 134, 146, 173, 350, 467, 506
CviKI_1	RGCY	7 cut(s)	17, 134, 146, 173, 350, 467, 506
CviQI	GTAC	3 cut(s)	178, 292, 511
DdeI	CTNAG	3 cut(s)	162, 472, 495
DinI	GGCGCC	3 cut(s)	83, 302, 416
DraI	TTTAAA	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	132, 465
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	272
EgeI	GGCGCC	3 cut(s)	83, 302, 416
EheI	GGCGCC	3 cut(s)	83, 302, 416
FaeI	CATG	4 cut(s)	178, 213, 241, 511
FaiI	YATR	7 cut(s)	176, 194, 211, 220, 234, 239, 509
FaqI	GGGAC	2 cut(s)	141, 474
FatI	CATG	4 cut(s)	174, 209, 237, 507
FauI	CCCGC	1 cut(s)	70
Fnu4HI	GCNGC	3 cut(s)	185, 398, 518
Fsp4HI	GCNGC	3 cut(s)	185, 398, 518
GlaI	GCGC	3 cut(s)	83, 302, 416
GluI	GCNGC	3 cut(s)	185, 398, 518
HaeII	RGCGCY	3 cut(s)	85, 304, 418
HaeIII	GGCC	2 cut(s)	134, 467
HapII	CCGG	4 cut(s)	30, 317, 363, 384
HgaI	GACGC	2 cut(s)	155, 488
HhaI	GCGC	3 cut(s)	84, 303, 417
Hin1I	GRCGYC	3 cut(s)	82, 301, 415
Hin1II	CATG	4 cut(s)	178, 213, 241, 511
Hin6I	GCGC	3 cut(s)	82, 301, 415
HinP1I	GCGC	3 cut(s)	82, 301, 415
HinfI	GANTC	1 cut(s)	530
HpaII	CCGG	4 cut(s)	30, 317, 363, 384
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	93, 529
Hpy188III	TCNNGA	2 cut(s)	250, 317
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	417
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	3 cut(s)	162, 472, 495
Hsp92I	GRCGYC	3 cut(s)	82, 301, 415
Hsp92II	CATG	4 cut(s)	178, 213, 241, 511
HspAI	GCGC	3 cut(s)	82, 301, 415
KasI	GGCGCC	3 cut(s)	81, 300, 414
Kpn2I	TCCGGA	1 cut(s)	316
LmnI	GCTCC	2 cut(s)	4, 197
Lsp1109I	GCAGC	2 cut(s)	196, 529
MaeIII	GTNAC	3 cut(s)	53, 212, 386
MboII	GAAGA	5 cut(s)	106, 121, 454, 478, 516
MlsI	TGGCCA	2 cut(s)	134, 467
MluCI	AATT	3 cut(s)	136, 260, 276
MluNI	TGGCCA	2 cut(s)	134, 467
Mly113I	GGCGCC	3 cut(s)	82, 301, 415
MlyI	GAGTC	1 cut(s)	524
MnlI	CCTC	5 cut(s)	90, 171, 362, 423, 504
Mox20I	TGGCCA	2 cut(s)	134, 467
MroI	TCCGGA	1 cut(s)	316
MscI	TGGCCA	2 cut(s)	134, 467
MseI	TTAA	3 cut(s)	264, 273, 309
Msp20I	TGGCCA	2 cut(s)	134, 467
MspI	CCGG	4 cut(s)	30, 317, 363, 384
MspR9I	CCNGG	2 cut(s)	31, 364
Mva1269I	GAATGC	2 cut(s)	187, 520
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	206
NarI	GGCGCC	3 cut(s)	82, 301, 415
NciI	CCSGG	2 cut(s)	31, 364
NlaIII	CATG	4 cut(s)	178, 213, 241, 511
NlaIV	GGNNCC	4 cut(s)	83, 254, 302, 416
NmuCI	GTSAC	3 cut(s)	53, 212, 386
NspI	RCATGY	2 cut(s)	213, 241
PaeI	GCATGC	1 cut(s)	241
PctI	GAATGC	2 cut(s)	187, 520
PfoI	TCCNGGA	2 cut(s)	29, 362
PkrI	GCNGC	3 cut(s)	186, 399, 519
PleI	GAGTC	1 cut(s)	524
PluTI	GGCGCC	3 cut(s)	85, 304, 418
PpsI	GAGTC	1 cut(s)	524
PspN4I	GGNNCC	4 cut(s)	83, 254, 302, 416
PstNI	CAGNNNCTG	2 cut(s)	20, 353
RsaI	GTAC	3 cut(s)	179, 293, 512
RsaNI	GTAC	3 cut(s)	178, 292, 511
SaqAI	TTAA	3 cut(s)	264, 273, 309
SatI	GCNGC	3 cut(s)	185, 398, 518
ScaI	AGTACT	1 cut(s)	293
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	2 cut(s)	31, 364
SfoI	GGCGCC	3 cut(s)	83, 302, 416
SgrAI	CRCCGGYG	1 cut(s)	383
SphI	GCATGC	1 cut(s)	241
Sse9I	AATT	3 cut(s)	136, 260, 276
SsiI	CCGC	4 cut(s)	67, 77, 397, 400
SspDI	GGCGCC	3 cut(s)	81, 300, 414
StyD4I	CCNGG	2 cut(s)	29, 362
TasI	AATT	3 cut(s)	136, 260, 276
TatI	WGTACW	3 cut(s)	177, 291, 510
TauI	GCSGC	1 cut(s)	400
Tru1I	TTAA	3 cut(s)	264, 273, 309
Tru9I	TTAA	3 cut(s)	264, 273, 309
TscAI	CASTG	3 cut(s)	25, 58, 358
TseFI	GTSAC	3 cut(s)	53, 212, 386
TseI	GCWGC	2 cut(s)	184, 517
Tsp45I	GTSAC	3 cut(s)	53, 212, 386
TspDTI	ATGAA	3 cut(s)	59, 221, 350
TspRI	CASTG	3 cut(s)	25, 58, 358
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	2 cut(s)	213, 241
ZrmI	AGTACT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.