Prupe.4G039100_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
1832438 .. 1832623
186 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G039100.1

Sequence Viewer

Length: 186 bp
ATGGAGGGTGCAAGGTGTGCTATGATCAACGGTGGGAATTTCTCTCAGAGCTTTAATTCCGGCCGTCTGATCCCAAAAAGGGGCCAGGTCAAGGTGGCTATTGTTGGGGTTCTGCTCCACTCTTTCTCTTCCATATTCTCTGCCAGTAGCCGCCGCCGTGGTGGTGATGCTCATCACTTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.54

Weight (kDa)

11.71

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 151, 154
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 1 cut(s) 37
AfiI CCNNNNNNNGG 3 cut(s) 79, 80, 91
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 61, 82
ApoI RAATTY 1 cut(s) 37
AspS9I GGNCC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 176
BceAI ACGGC 2 cut(s) 48, 141
BciT130I CCWGG 1 cut(s) 86
BclI TGATCA 1 cut(s) 24
BisI GCNGC 2 cut(s) 151, 154
BlsI GCNGC 2 cut(s) 152, 155
Bme1390I CCNGG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 80, 91
Bse1I ACTGG 1 cut(s) 144
Bse8I GATNNNNATC 1 cut(s) 171
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 1 cut(s) 157
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 3 cut(s) 79, 80, 91
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 1 cut(s) 144
BseX3I CGGCCG 1 cut(s) 61
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 63, 84
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 60
BslI CCNNNNNNNGG 3 cut(s) 79, 80, 91
BsnI GGCC 2 cut(s) 63, 84
Bsp143I GATC 2 cut(s) 24, 69
BspACI CCGC 2 cut(s) 151, 154
BspANI GGCC 2 cut(s) 63, 84
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 2 cut(s) 24, 69
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 1 cut(s) 133
BstAPI GCANNNNNTGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 45, 183
BstDSI CCRYGG 1 cut(s) 157
BstKTI GATC 2 cut(s) 27, 72
BstMBI GATC 2 cut(s) 24, 69
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstZI CGGCCG 1 cut(s) 61
BsuRI GGCC 2 cut(s) 63, 84
BtgI CCRYGG 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 82
CviJI RGCY 5 cut(s) 51, 63, 84, 98, 150
CviKI_1 RGCY 5 cut(s) 51, 63, 84, 98, 150
DdeI CTNAG 2 cut(s) 45, 183
DpnI GATC 2 cut(s) 26, 71
DpnII GATC 2 cut(s) 24, 69
EaeI YGGCCR 1 cut(s) 61
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EclXI CGGCCG 1 cut(s) 61
Eco52I CGGCCG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 84
FaiI YATR 2 cut(s) 23, 134
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 151, 154
Fsp4HI GCNGC 2 cut(s) 151, 154
GluI GCNGC 2 cut(s) 151, 154
HaeIII GGCC 2 cut(s) 63, 84
HapII CCGG 1 cut(s) 60
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 176
Hpy188I TCNGA 2 cut(s) 48, 69
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 2 cut(s) 45, 183
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 69
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 71, 73, 98, 157
LweI GCATC 1 cut(s) 157
MalI GATC 2 cut(s) 26, 71
MboI GATC 2 cut(s) 24, 69
MboII GAAGA 1 cut(s) 120
MluCI AATT 2 cut(s) 37, 55
MseI TTAA 1 cut(s) 54
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeII GATC 2 cut(s) 24, 69
NlaIV GGNNCC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 152, 155
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 82
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 2 cut(s) 151, 154
Sau3AI GATC 2 cut(s) 24, 69
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 1 cut(s) 86
SetI ASST 4 cut(s) 17, 53, 90, 96
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 7 cut(s) 24, 72, 97, 98, 103, 156, 170
Sse9I AATT 2 cut(s) 37, 55
SsiI CCGC 2 cut(s) 151, 154
StyD4I CCNGG 1 cut(s) 84
TaaI ACNGT 1 cut(s) 32
TasI AATT 2 cut(s) 37, 55
TauI GCSGC 2 cut(s) 153, 156
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
XapI RAATTY 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.