Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011535

Physical Location & Seq

Genomic Coordinates Reverse (-)

4074339 .. 4075541

Gene Structure 1203 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG051200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAGCGTTCCACAGCCACTGCCACTTCCGGGAGAGCAATGATGAACGCCAGTGACTTTTCAGGGCGGTTTCCTGCGGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAATTCTGTGGCTTCCATTTTCACTCCTCAGCGTCCAGCCATGGACAAGCAGCATTCTAGTCGACGATCTGTGGCACCCAACACTGCCTTATTGGTTCCGATCTTGGCGAAAATTACAAAGTTAAATTTATGCAAGTCCATATATATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.23

Weight (kDa)

11.3

Isoelectric Point (pI)

51.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04381
malus_domestica	MD05G1323400.v1.1 MD10G1301200.v1.1
prunus_persica	Prupe.4G039100_v2.0.a1 Prupe.4G039200_v2.0.a1
pyrus_communis	pycom05g29770 pycom05g29780
rosa_chinensis	RchiOBHm_Chr5g0006771 RchiOBHm_Chr5g0006781 RchiOBHm_Chr5g0006791 RchiOBHm_Chr5g0006801 RchiOBHm_Chr5g0006811
rosa_laevigata	RLG00000031430
rosa_roxburghii	Rroxscaffold_1G00069240 Rroxscaffold_1G00069260
rosa_rugosa	Rorug04G0424600
rosa_samantha	Rh5BG051200 Rh5BG051300 Rh5CG059800 Rh5DG050400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	81, 208
AccI	GTMKAC	1 cut(s)	196
AciI	CCGC	2 cut(s)	67, 77
AcoI	YGGCCR	1 cut(s)	132
AcsI	RAATTY	1 cut(s)	259
AcyI	GRCGYC	1 cut(s)	82
AfiI	CCNNNNNNNGG	2 cut(s)	30, 98
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	184
ApoI	RAATTY	1 cut(s)	259
AspLEI	GCGC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	134
BanI	GGYRCC	2 cut(s)	81, 208
BbvCI	CCTCAGC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	106
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	1 cut(s)	192
BfoI	RGCGCY	1 cut(s)	85
BisI	GCNGC	1 cut(s)	185
BlsI	GCNGC	1 cut(s)	186
Bme1390I	CCNGG	1 cut(s)	31
BmiI	GGNNCC	3 cut(s)	83, 210, 231
BmrFI	CCNGG	1 cut(s)	31
Bpu10I	CCTNAGC	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	82
BsaJI	CCNNGG	1 cut(s)	174
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 98
Bse1I	ACTGG	2 cut(s)	51, 135
Bse3DI	GCAATG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	30, 98
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	2 cut(s)	51, 135
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	196
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	2 cut(s)	81, 208
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	30, 98
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	200, 234
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	67, 77
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	83, 210, 231
BspT107I	GGYRCC	2 cut(s)	81, 208
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	51, 135
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	2 cut(s)	200, 234
BssNI	GRCGYC	1 cut(s)	82
BssT1I	CCWWGG	1 cut(s)	174
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	162
BstDSI	CCRYGG	1 cut(s)	174
BstH2I	RGCGCY	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	2 cut(s)	203, 237
BstMBI	GATC	2 cut(s)	200, 234
BstSCI	CCNGG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	196
BstXI	CCANNNNNNTGG	2 cut(s)	142, 280
BsuRI	GGCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	174
BtsI	GCAGTG	2 cut(s)	18, 216
BtsIMutI	CAGTG	3 cut(s)	18, 58, 216
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	1 cut(s)	84
CseI	GACGC	1 cut(s)	155
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	4 cut(s)	17, 134, 146, 173
CviKI_1	RGCY	4 cut(s)	17, 134, 146, 173
DdeI	CTNAG	1 cut(s)	162
DinI	GGCGCC	1 cut(s)	83
DpnI	GATC	2 cut(s)	202, 236
DpnII	GATC	2 cut(s)	200, 234
EaeI	YGGCCR	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	174
EgeI	GGCGCC	1 cut(s)	83
EheI	GGCGCC	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	178
FaiI	YATR	6 cut(s)	176, 265, 275, 277, 279, 281
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	1 cut(s)	174
FauI	CCCGC	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	185
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	1 cut(s)	185
HaeII	RGCGCY	1 cut(s)	85
HaeIII	GGCC	1 cut(s)	134
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	84
Hin1I	GRCGYC	1 cut(s)	82
Hin1II	CATG	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HincII	GTYRAC	1 cut(s)	197
HindII	GTYRAC	1 cut(s)	197
HpaII	CCGG	1 cut(s)	30
Hpy166II	GTNNAC	1 cut(s)	197
Hpy188I	TCNGA	2 cut(s)	93, 234
Hpy8I	GTNNAC	1 cut(s)	197
Hpy99I	CGWCG	1 cut(s)	201
HpyCH4V	TGCA	1 cut(s)	267
HpyF3I	CTNAG	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	82
Hsp92II	CATG	1 cut(s)	178
HspAI	GCGC	1 cut(s)	82
KasI	GGCGCC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	200, 234
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	43, 48, 64, 87, 116, 183
Lsp1109I	GCAGC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	192
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	202, 236
MboI	GATC	2 cut(s)	200, 234
MboII	GAAGA	2 cut(s)	106, 121
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	3 cut(s)	136, 246, 259
MluNI	TGGCCA	1 cut(s)	134
Mly113I	GGCGCC	1 cut(s)	82
MnlI	CCTC	2 cut(s)	90, 171
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
MseI	TTAA	1 cut(s)	257
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	187
NarI	GGCGCC	1 cut(s)	82
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	200, 234
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	83, 210, 231
NmuCI	GTSAC	1 cut(s)	53
PctI	GAATGC	1 cut(s)	187
PfoI	TCCNGGA	1 cut(s)	29
PkrI	GCNGC	1 cut(s)	186
PluTI	GGCGCC	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	83, 210, 231
PstNI	CAGNNNCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	278
SalI	GTCGAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	257
SatI	GCNGC	1 cut(s)	185
Sau3AI	GATC	2 cut(s)	200, 234
ScrFI	CCNGG	1 cut(s)	31
SfoI	GGCGCC	1 cut(s)	83
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	3 cut(s)	136, 246, 259
SsiI	CCGC	2 cut(s)	67, 77
SspDI	GGCGCC	1 cut(s)	81
SspMI	CTAG	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	174
TaqI	TCGA	1 cut(s)	196
TasI	AATT	3 cut(s)	136, 246, 259
Tru1I	TTAA	1 cut(s)	257
Tru9I	TTAA	1 cut(s)	257
TscAI	CASTG	3 cut(s)	25, 58, 223
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	184
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	59
TspRI	CASTG	3 cut(s)	25, 58, 223
XapI	RAATTY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	196
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.