Rroxscaffold_1G00069240

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
90218224 .. 90230698
12475 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069240.1

Sequence Viewer

Length: 204 bp
ATGAAGAGTTCCACTGCCACTGCCATTTCCGGGAGAGCAATGATGAACGCCAGTGACTTTTCACGGCGGTTTCCTGCGGGGCGCCCTATTCCAAAGAGGGGTCAAGTCAAGATGGGGATAGTGGTGGGACTGAAAAATTCTGTGGCTTCCATTTTCACTCCTCTGCGTCCAGCCATGTACAAGCAGCATTCTAGTAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.23

Weight (kDa)

12.0

Isoelectric Point (pI)

51.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AciI CCGC 2 cut(s) 67, 77
AcsI RAATTY 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 2 cut(s) 30, 98
ApeKI GCWGC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 136
AspLEI GCGC 1 cut(s) 84
AsuC2I CCSGG 1 cut(s) 31
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 196
BccI CCATC 1 cut(s) 106
BceAI ACGGC 1 cut(s) 80
BcnI CCSGG 1 cut(s) 31
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 31
BpuMI CCSGG 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 98
Bse1I ACTGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 45
BseLI CCNNNNNNNGG 2 cut(s) 30, 98
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 2 cut(s) 30, 98
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 187
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 2 cut(s) 67, 77
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 45
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 82
BstACI GRCGYC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 177
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 1 cut(s) 196
BtsI GCAGTG 2 cut(s) 12, 18
BtsIMutI CAGTG 3 cut(s) 12, 18, 58
CfoI GCGC 1 cut(s) 84
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 175
CviJI RGCY 2 cut(s) 146, 173
CviKI_1 RGCY 2 cut(s) 146, 173
CviQI GTAC 1 cut(s) 178
DinI GGCGCC 1 cut(s) 83
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 185
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 185
HaeII RGCGCY 1 cut(s) 85
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HpaII CCGG 1 cut(s) 30
Hpy188III TCNNGA 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
LpnPI CCDG 4 cut(s) 43, 64, 87, 183
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 2 cut(s) 53, 194
MboII GAAGA 1 cut(s) 16
MluCI AATT 1 cut(s) 136
Mly113I GGCGCC 1 cut(s) 82
MnlI CCTC 2 cut(s) 90, 171
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 187
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 1 cut(s) 31
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 53
PctI GAATGC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 1 cut(s) 186
PluTI GGCGCC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 1 cut(s) 185
ScrFI CCNGG 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 83
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 67, 77
SspDI GGCGCC 1 cut(s) 81
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 29
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 177
TscAI CASTG 3 cut(s) 19, 25, 58
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 17, 59
TspRI CASTG 3 cut(s) 19, 25, 58
XapI RAATTY 1 cut(s) 136
XspI CTAG 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.