pycom05g29780

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
30153504 .. 30153689
186 bp
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UTR
Exon/CDS
Intron
pycom05g29780.1

Sequence Viewer

Length: 186 bp
ATGGAGGGTGCAAGGAATGCTATGATCAACGGTGGGAGTTTCTCCGGTCGTCTGATCCCCAAGAGGGGTCAGGTGAAACTGGCTATTGTGGGGGTTCTGCGTCACTCTATCTCATCCATTTTCTTTGCCAGCAGCCGCCGTGGCGGCGGGGGCTGTGAATCCGGCGATGCTCATCACTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.37

Weight (kDa)

11.35

Isoelectric Point (pI)

37.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 136, 144, 147
AclWI GGATC 1 cut(s) 49
AfiI CCNNNNNNNGG 2 cut(s) 64, 65
AlwI GGATC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 132
AsuHPI GGTGA 1 cut(s) 85
BbvI GCAGC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 123
BclI TGATCA 1 cut(s) 24
BglI GCCNNNNNGGC 2 cut(s) 141, 144
BisI GCNGC 3 cut(s) 133, 136, 145
BlsI GCNGC 3 cut(s) 134, 137, 146
BmsI GCATC 1 cut(s) 157
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 65
Bse1I ACTGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 171
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 1 cut(s) 113
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 64, 65
BseNI ACTGG 1 cut(s) 84
BseXI GCAGC 1 cut(s) 144
Bsh1285I CGRYCG 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 45, 162
BslI CCNNNNNNNGG 2 cut(s) 64, 65
BsmI GAATGC 1 cut(s) 22
Bsp143I GATC 2 cut(s) 24, 54
BspACI CCGC 3 cut(s) 136, 144, 147
BspPI GGATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 2 cut(s) 24, 54
Bst4CI ACNGT 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 130
BstDSI CCRYGG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 113
BstKTI GATC 2 cut(s) 27, 57
BstMBI GATC 2 cut(s) 24, 54
BstMCI CGRYCG 1 cut(s) 49
BstMWI GCNNNNNNNGC 4 cut(s) 17, 141, 144, 150
BstV1I GCAGC 1 cut(s) 144
BtgI CCRYGG 1 cut(s) 139
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 130
CseI GACGC 1 cut(s) 89
CviJI RGCY 3 cut(s) 83, 135, 153
CviKI_1 RGCY 3 cut(s) 83, 135, 153
DpnI GATC 2 cut(s) 26, 56
DpnII GATC 2 cut(s) 24, 54
FaiI YATR 1 cut(s) 23
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 3 cut(s) 133, 136, 145
FokI GGATG 1 cut(s) 100
Fsp4HI GCNGC 3 cut(s) 133, 136, 145
GluI GCNGC 3 cut(s) 133, 136, 145
HapII CCGG 2 cut(s) 45, 162
HgaI GACGC 1 cut(s) 89
HinfI GANTC 1 cut(s) 158
HpaII CCGG 2 cut(s) 45, 162
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 1 cut(s) 11
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 141, 144, 150
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 2 cut(s) 24, 54
LpnPI CCDG 5 cut(s) 56, 58, 65, 142, 175
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 157
MaeIII GTNAC 1 cut(s) 101
MalI GATC 2 cut(s) 26, 56
MboI GATC 2 cut(s) 24, 54
MnlI CCTC 1 cut(s) 57
MspI CCGG 2 cut(s) 45, 162
Mva1269I GAATGC 1 cut(s) 22
MwoI GCNNNNNNNGC 4 cut(s) 17, 141, 144, 150
NdeII GATC 2 cut(s) 24, 54
NmuCI GTSAC 1 cut(s) 101
PctI GAATGC 1 cut(s) 22
PfeI GAWTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 134, 137, 146
SatI GCNGC 3 cut(s) 133, 136, 145
Sau3AI GATC 2 cut(s) 24, 54
SetI ASST 1 cut(s) 75
SfaNI GCATC 1 cut(s) 157
SgeI CNNG 9 cut(s) 24, 57, 73, 83, 92, 141, 152, 160, 174
SsiI CCGC 3 cut(s) 136, 144, 147
TaaI ACNGT 1 cut(s) 32
TauI GCSGC 2 cut(s) 138, 147
TfiI GAWTC 1 cut(s) 158
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 132
Tsp45I GTSAC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.