Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011535

Physical Location & Seq

Genomic Coordinates Forward (+)

30143097 .. 30144808

Gene Structure 1712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGAAGGTTCCGTAGCCACTGCTAGCGCCGGGAGAGCGATGATGAACGGCGGAGATTTGTCGAGGAGATTTTCCGGCCGGCCAAGTCCGAAGAGGGGTCAGGTGAAGATGGGGATCGTGGTGGGATTAGCCAACTCTGTGGCTTCCATCTTCAATCCTCACAGTTCATCACTGCACAGGCAAGGTAGTAAATCCCCTTATCATGAAGAAGTCAATTGGAAGTATGTGGATAAATTACCCCATCATGGAGGAGATTTGAAAGGTTATCTTCATCTTTCGCTCCAGTTCGGTGGAACTATTCACAGAGAAGAGAACAAAGCAGCACATGAAGCTGCTAGCCTGGGTGTCAAGACGGTGTGCCGTCAACGGTTGGCCTCGTGGCCTCCTCCCTCTTTGGTTTTGGTTTTGTCAAGGGACGGGCTCATGTTAACCGGAAAATGTAAATCAAGATTTTGGATGTGCATACGTATGAACCAAGTCCTTTTCAGTGCAAGATTCAGTGCATGCACCGTACTATACTATGGCTTTGCTCTCCACCGTACTATACTATGGCTTTGTTCTCCTAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

20.98

Weight (kDa)

10.08

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011535)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g04381
malus_domestica	MD05G1323400.v1.1 MD10G1301200.v1.1
prunus_persica	Prupe.4G039100_v2.0.a1 Prupe.4G039200_v2.0.a1
pyrus_communis	pycom05g29770 pycom05g29780
rosa_chinensis	RchiOBHm_Chr5g0006771 RchiOBHm_Chr5g0006781 RchiOBHm_Chr5g0006791 RchiOBHm_Chr5g0006801 RchiOBHm_Chr5g0006811
rosa_laevigata	RLG00000031430
rosa_roxburghii	Rroxscaffold_1G00069240 Rroxscaffold_1G00069260
rosa_rugosa	Rorug04G0424600
rosa_samantha	Rh5BG051200 Rh5BG051300 Rh5CG059800 Rh5DG050400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	76, 80
AfaI	GTAC	2 cut(s)	513, 541
AfiI	CCNNNNNNNGG	2 cut(s)	95, 245
AgsI	TTSAA	2 cut(s)	154, 259
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwI	GGATC	1 cut(s)	122
AoxI	GGCC	4 cut(s)	76, 80, 372, 380
ApeKI	GCWGC	2 cut(s)	320, 332
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	1 cut(s)	115
AsuNHI	GCTAGC	2 cut(s)	23, 335
BanII	GRGCYC	1 cut(s)	423
BauI	CACGAG	1 cut(s)	376
BbvI	GCAGC	2 cut(s)	319, 332
BccI	CCATC	3 cut(s)	103, 155, 249
BceAI	ACGGC	2 cut(s)	64, 345
BciT130I	CCWGG	1 cut(s)	341
BcnI	CCSGG	1 cut(s)	31
BfaI	CTAG	2 cut(s)	24, 336
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	2 cut(s)	321, 333
BlsI	GCNGC	2 cut(s)	322, 334
Bme1390I	CCNGG	2 cut(s)	31, 341
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	31, 341
BmtI	GCTAGC	2 cut(s)	27, 339
BpmI	CTGGAG	1 cut(s)	266
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	467
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	340
BsaWI	WCCGGW	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	2 cut(s)	95, 245
Bse118I	RCCGGY	1 cut(s)	78
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	2 cut(s)	95, 245
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	3 cut(s)	79, 264, 375
BseX3I	CGGCCG	1 cut(s)	76
BseXI	GCAGC	2 cut(s)	319, 332
BsgI	GTGCAG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	79
BshFI	GGCC	4 cut(s)	78, 82, 374, 382
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	4 cut(s)	30, 75, 79, 432
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	95, 245
BsmFI	GGGAC	1 cut(s)	428
BsnI	GGCC	4 cut(s)	78, 82, 374, 382
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	1 cut(s)	114
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	4 cut(s)	78, 82, 374, 382
BspHI	TCATGA	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	10
BspOI	GCTAGC	2 cut(s)	27, 339
BspPI	GGATC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	78
BsrI	ACTGG	1 cut(s)	283
BssAI	RCCGGY	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	114
BssSI	CACGAG	1 cut(s)	376
Bst2BI	CACGAG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	5 cut(s)	164, 355, 369, 511, 539
Bst6I	CTCTTC	2 cut(s)	86, 303
BstBAI	YACGTR	1 cut(s)	467
BstC8I	GCNNGC	4 cut(s)	25, 80, 337, 505
BstF5I	GGATG	1 cut(s)	462
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	1 cut(s)	117
BstMBI	GATC	1 cut(s)	114
BstMCI	CGRYCG	1 cut(s)	79
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 329
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	507
BstSCI	CCNGG	2 cut(s)	29, 339
BstSNI	TACGTA	1 cut(s)	467
BstV1I	GCAGC	2 cut(s)	319, 332
BstXI	CCANNNNNNTGG	2 cut(s)	139, 290
BstZI	CGGCCG	1 cut(s)	76
BsuRI	GGCC	4 cut(s)	78, 82, 374, 382
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	2 cut(s)	18, 170
BtsIMutI	CAGTG	4 cut(s)	18, 170, 493, 505
Cac8I	GCNNGC	4 cut(s)	25, 80, 337, 505
CciI	TCATGA	1 cut(s)	202
CfoI	GCGC	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	512, 540
CviAII	CATG	5 cut(s)	203, 245, 326, 424, 504
CviQI	GTAC	2 cut(s)	512, 540
DpnI	GATC	1 cut(s)	116
DpnII	GATC	1 cut(s)	114
EaeI	YGGCCR	2 cut(s)	76, 80
EagI	CGGCCG	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	86, 303
EarI	CTCTTC	2 cut(s)	86, 303
EciI	GGCGGA	1 cut(s)	66
EclXI	CGGCCG	1 cut(s)	76
Eco105I	TACGTA	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	423
Eco52I	CGGCCG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	5 cut(s)	206, 248, 329, 427, 507
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FaqI	GGGAC	1 cut(s)	428
FatI	CATG	5 cut(s)	202, 244, 325, 423, 503
Fnu4HI	GCNGC	2 cut(s)	321, 333
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	423
FseI	GGCCGGCC	1 cut(s)	82
Fsp4HI	GCNGC	2 cut(s)	321, 333
FspBI	CTAG	2 cut(s)	24, 336
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	321, 333
GsuI	CTGGAG	1 cut(s)	266
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	4 cut(s)	78, 82, 374, 382
HapII	CCGG	4 cut(s)	30, 75, 79, 432
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	206, 248, 329, 427, 507
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	2 cut(s)	365, 429
HindII	GTYRAC	2 cut(s)	365, 429
HinfI	GANTC	1 cut(s)	495
HpaI	GTTAAC	1 cut(s)	429
HpaII	CCGG	4 cut(s)	30, 75, 79, 432
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	2 cut(s)	365, 429
Hpy188I	TCNGA	1 cut(s)	90
Hpy188III	TCNNGA	3 cut(s)	203, 349, 447
Hpy8I	GTNNAC	2 cut(s)	365, 429
HpyCH4III	ACNGT	5 cut(s)	164, 355, 369, 511, 539
HpyCH4IV	ACGT	1 cut(s)	466
HpyCH4V	TGCA	5 cut(s)	175, 462, 491, 503, 507
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 329
HpySE526I	ACGT	1 cut(s)	466
Hsp92II	CATG	5 cut(s)	206, 248, 329, 427, 507
HspAI	GCGC	1 cut(s)	27
KroI	GCCGGC	1 cut(s)	78
KroNI	GCCGGC	1 cut(s)	80
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	1 cut(s)	114
LmnI	GCTCC	1 cut(s)	285
LpnPI	CCDG	9 cut(s)	43, 86, 88, 92, 163, 296, 326, 353, 445
Lsp1109I	GCAGC	2 cut(s)	319, 332
MaeI	CTAG	2 cut(s)	24, 336
MaeII	ACGT	1 cut(s)	466
MalI	GATC	1 cut(s)	116
MboI	GATC	1 cut(s)	114
MboII	GAAGA	6 cut(s)	103, 118, 142, 218, 260, 320
MfeI	CAATTG	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	423
MluCI	AATT	3 cut(s)	214, 233, 568
MnlI	CCTC	8 cut(s)	57, 87, 168, 242, 385, 393, 396, 400
MroNI	GCCGGC	1 cut(s)	78
MseI	TTAA	1 cut(s)	428
MslI	CAYNNNNRTG	1 cut(s)	467
MspI	CCGG	4 cut(s)	30, 75, 79, 432
MspR9I	CCNGG	2 cut(s)	31, 341
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	35, 329
NaeI	GCCGGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	1 cut(s)	114
NgoMIV	GCCGGC	1 cut(s)	78
NheI	GCTAGC	2 cut(s)	23, 335
NlaIII	CATG	5 cut(s)	206, 248, 329, 427, 507
NlaIV	GGNNCC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	507
PaeI	GCATGC	1 cut(s)	507
PagI	TCATGA	1 cut(s)	202
PdiI	GCCGGC	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	495
PkrI	GCNGC	2 cut(s)	322, 334
Ppu21I	YACGTR	1 cut(s)	467
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	10
RigI	GGCCGGCC	1 cut(s)	82
RsaI	GTAC	2 cut(s)	513, 541
RsaNI	GTAC	2 cut(s)	512, 540
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	321, 333
Sau3AI	GATC	1 cut(s)	114
ScrFI	CCNGG	2 cut(s)	31, 341
SduI	GDGCHC	1 cut(s)	423
SetI	ASST	6 cut(s)	10, 105, 187, 265, 334, 469
SmiMI	CAYNNNNRTG	1 cut(s)	467
SnaBI	TACGTA	1 cut(s)	467
SphI	GCATGC	1 cut(s)	507
Sse9I	AATT	3 cut(s)	214, 233, 568
SsiI	CCGC	1 cut(s)	51
SspMI	CTAG	2 cut(s)	24, 336
StyD4I	CCNGG	2 cut(s)	29, 339
TaaI	ACNGT	5 cut(s)	164, 355, 369, 511, 539
TaiI	ACGT	1 cut(s)	469
TaqI	TCGA	1 cut(s)	62
TasI	AATT	3 cut(s)	214, 233, 568
TfiI	GAWTC	1 cut(s)	495
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	4 cut(s)	25, 177, 493, 505
TseI	GCWGC	2 cut(s)	320, 332
TspDTI	ATGAA	6 cut(s)	59, 156, 219, 260, 342, 485
TspRI	CASTG	4 cut(s)	25, 177, 493, 505
XceI	RCATGY	1 cut(s)	507
XspI	CTAG	2 cut(s)	24, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.