Rroxscaffold_1G00069260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011535
Physical Location & Seq
Forward (+)
90256735 .. 90258022
1288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00069260.1

Sequence Viewer

Length: 318 bp
ATGAAAAGTTCCACAGCCACTGCCACTTCCAGGAGAGGAATGATGAAGGCCGGTGACTTTTCGCGGCGGTTTCCTTCGGGGCGCCCTGTTCCCAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGATTGGCCAACTCAGTTGCTTCCATCTTCACTCCTCAGCGTCCAGCCATGGGGACTGAAGCCAAACCCTACTATATGCATTCCATATATGATATATCTCGCCAAGATATATTAGTGAATTATTATATGAAGAACAATCATCAACCAAATTCTAATATCATAATCCCACTGCTTAGATACGAATCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.81

Weight (kDa)

10.43

Isoelectric Point (pI)

75.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 64, 67
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 3 cut(s) 30, 98, 176
AjnI CCWGG 1 cut(s) 29
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 2 cut(s) 48, 132
ApoI RAATTY 1 cut(s) 274
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 65
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 162
BccI CCATC 2 cut(s) 106, 158
BciT130I CCWGG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 1 cut(s) 65
BlsI GCNGC 1 cut(s) 66
Bme1390I CCNGG 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 31
Bpu10I CCTNAGC 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 307
BsaHI GRCGYC 1 cut(s) 82
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 98, 176
Bse118I RCCGGY 1 cut(s) 50
Bse8I GATNNNNATC 1 cut(s) 307
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 174
BseJI GATNNNNATC 1 cut(s) 307
BseLI CCNNNNNNNGG 3 cut(s) 30, 98, 176
BseMII CTCAG 2 cut(s) 153, 176
BseRI GAGGAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 50, 134
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 3 cut(s) 30, 98, 176
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 2 cut(s) 50, 134
Bsp19I CCATGG 1 cut(s) 174
BspACI CCGC 2 cut(s) 64, 67
BspANI GGCC 2 cut(s) 50, 134
BspCNI CTCAG 2 cut(s) 152, 175
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 1 cut(s) 174
BssNI GRCGYC 1 cut(s) 82
BssT1I CCWWGG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 82
BstDEI CTNAG 3 cut(s) 139, 162, 299
BstDSI CCRYGG 1 cut(s) 174
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 29
BstUI CGCG 1 cut(s) 64
BsuRI GGCC 2 cut(s) 50, 134
BtgI CCRYGG 1 cut(s) 174
BtsI GCAGTG 2 cut(s) 18, 293
BtsIMutI CAGTG 2 cut(s) 18, 293
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 1 cut(s) 155
CviAII CATG 1 cut(s) 175
CviJI RGCY 5 cut(s) 17, 50, 134, 173, 188
CviKI_1 RGCY 5 cut(s) 17, 50, 134, 173, 188
DdeI CTNAG 3 cut(s) 139, 162, 299
DinI GGCGCC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 174
EcoT22I ATGCAT 1 cut(s) 207
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 174
FaeI CATG 1 cut(s) 178
FaqI GGGAC 1 cut(s) 193
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 1 cut(s) 65
Fsp4HI GCNGC 1 cut(s) 65
GlaI GCGC 1 cut(s) 83
GluI GCNGC 1 cut(s) 65
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 2 cut(s) 50, 134
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 308
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 40, 84
HpyCH4V TGCA 1 cut(s) 205
HpyF3I CTNAG 3 cut(s) 139, 162, 299
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
LpnPI CCDG 5 cut(s) 16, 43, 64, 99, 183
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 3 cut(s) 121, 145, 268
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 2 cut(s) 244, 274
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 82
MnlI CCTC 3 cut(s) 29, 90, 171
Mox20I TGGCCA 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 207
MscI TGGCCA 1 cut(s) 134
MseI TTAA 1 cut(s) 316
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 31
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 64
NarI GGCGCC 1 cut(s) 82
NcoI CCATGG 1 cut(s) 174
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 207
PctI GAATGC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 1 cut(s) 66
PluTI GGCGCC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 20
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 31
SfoI GGCGCC 1 cut(s) 83
Sse9I AATT 2 cut(s) 244, 274
SsiI CCGC 2 cut(s) 64, 67
SspDI GGCGCC 1 cut(s) 81
StyD4I CCNGG 1 cut(s) 29
StyI CCWWGG 1 cut(s) 174
TasI AATT 2 cut(s) 244, 274
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 2 cut(s) 25, 300
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 17, 59, 269
TspRI CASTG 2 cut(s) 25, 300
XapI RAATTY 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.