RchiOBHm_Chr5g0006791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0011535
Physical Location & Seq
Reverse (-)
4213860 .. 4214603
744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28789

Sequence Viewer

Length: 204 bp
ATGAAAAGTTCCACAGCCACTGCCACTTCCGGAAGAGGAATGATGAACGCCGGTGACTTTTCGCGGCGGTTTCCTTCGGGGCGCCCTGTTCCCAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAACTCAGTTGCTTCCATCTTCACTCCTCAGCGTCCAGCCATGTACAAGCAGCATTCTTCTGACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.13

Weight (kDa)

11.73

Isoelectric Point (pI)

60.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 64
AccIII TCCGGA 1 cut(s) 29
AciI CCGC 2 cut(s) 64, 67
AcoI YGGCCR 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 179
AfiI CCNNNNNNNGG 1 cut(s) 98
AlwNI CAGNNNCTG 1 cut(s) 20
Aor13HI TCCGGA 1 cut(s) 29
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 65
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 81
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 106, 158
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 65, 185
BlsI GCNGC 2 cut(s) 66, 186
BmiI GGNNCC 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMII CTCAG 2 cut(s) 153, 176
BseNI ACTGG 1 cut(s) 135
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 30, 51
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 141
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 134
Bsp13I TCCGGA 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 2 cut(s) 64, 67
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 152, 175
BspEI TCCGGA 1 cut(s) 29
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 135
BssAI RCCGGY 1 cut(s) 50
BssNI GRCGYC 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 28
BstACI GRCGYC 1 cut(s) 82
BstAUI TGTACA 1 cut(s) 177
BstDEI CTNAG 2 cut(s) 139, 162
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 196
BsuRI GGCC 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 1 cut(s) 18
CaiI CAGNNNCTG 1 cut(s) 20
CfoI GCGC 1 cut(s) 84
Cfr10I RCCGGY 1 cut(s) 50
CseI GACGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 178
CviAII CATG 1 cut(s) 175
CviJI RGCY 3 cut(s) 17, 134, 173
CviKI_1 RGCY 3 cut(s) 17, 134, 173
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 139, 162
DinI GGCGCC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 28
EarI CTCTTC 1 cut(s) 28
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 1 cut(s) 178
FaiI YATR 1 cut(s) 176
FaqI GGGAC 1 cut(s) 141
FatI CATG 1 cut(s) 174
Fnu4HI GCNGC 2 cut(s) 65, 185
Fsp4HI GCNGC 2 cut(s) 65, 185
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 65, 185
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 134
HapII CCGG 2 cut(s) 30, 51
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 1 cut(s) 178
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HinfI GANTC 1 cut(s) 197
HpaII CCGG 2 cut(s) 30, 51
HphI GGTGA 1 cut(s) 65
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 84
HpyF3I CTNAG 2 cut(s) 139, 162
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 1 cut(s) 178
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
Kpn2I TCCGGA 1 cut(s) 29
LpnPI CCDG 5 cut(s) 43, 64, 99, 116, 183
Lsp1109I GCAGC 1 cut(s) 196
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 4 cut(s) 45, 121, 145, 183
MlsI TGGCCA 1 cut(s) 134
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 82
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 3 cut(s) 29, 90, 171
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 1 cut(s) 29
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 30, 51
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 64
NarI GGCGCC 1 cut(s) 82
NlaIII CATG 1 cut(s) 178
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 53
PctI GAATGC 1 cut(s) 187
PkrI GCNGC 2 cut(s) 66, 186
PleI GAGTC 1 cut(s) 191
PluTI GGCGCC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 83
PstNI CAGNNNCTG 1 cut(s) 20
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
SatI GCNGC 2 cut(s) 65, 185
SchI GAGTC 1 cut(s) 191
SfoI GGCGCC 1 cut(s) 83
SgrAI CRCCGGYG 1 cut(s) 50
SsiI CCGC 2 cut(s) 64, 67
SspDI GGCGCC 1 cut(s) 81
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 67
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 2 cut(s) 17, 59
TspRI CASTG 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.