Prupe.4G039200_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
1835289 .. 1835489
201 bp
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UTR
Exon/CDS
Intron
Prupe.4G039200.1

Sequence Viewer

Length: 201 bp
ATGGAGGGTGCCACAGCTACTGCCGGGAGAGCAATGATGAACGGTGGAGATTTGTCCAGGAGATTATCTGGCCGTCCGATTCCAAAGAGGGGTCAGGTGAAGATGGGAATTGTGGTGGGATTAGCCAATTCTGTGGCTTCCATCTTTGGTCCTCACCGCCGCCGTCCATCAATGCACAGCCAGTCAAGGAACAACTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.02

Weight (kDa)

12.0

Isoelectric Point (pI)

71.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 2 cut(s) 157, 160
AcoI YGGCCR 1 cut(s) 70
AfiI CCNNNNNNNGG 1 cut(s) 89
AjnI CCWGG 1 cut(s) 56
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 25
AsuHPI GGTGA 2 cut(s) 109, 146
AvaII GGWCC 1 cut(s) 149
BanI GGYRCC 1 cut(s) 8
BccI CCATC 3 cut(s) 97, 149, 175
BceAI ACGGC 2 cut(s) 57, 147
BciT130I CCWGG 1 cut(s) 58
BcnI CCSGG 1 cut(s) 25
BfaI CTAG 1 cut(s) 199
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 2 cut(s) 25, 58
Bme18I GGWCC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 2 cut(s) 25, 58
BpuMI CCSGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 181
BshFI GGCC 1 cut(s) 72
BshNI GGYRCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 89
BsnI GGCC 1 cut(s) 72
BspACI CCGC 2 cut(s) 157, 160
BspANI GGCC 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 10
BspT107I GGYRCC 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 181
Bst2UI CCWGG 1 cut(s) 58
Bst4CI ACNGT 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 1 cut(s) 58
BstSCI CCNGG 2 cut(s) 23, 56
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuRI GGCC 1 cut(s) 72
CaiI CAGNNNCTG 1 cut(s) 20
Cfr13I GGNCC 1 cut(s) 149
CviJI RGCY 5 cut(s) 17, 72, 125, 137, 180
CviKI_1 RGCY 5 cut(s) 17, 72, 125, 137, 180
EaeI YGGCCR 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 56
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
FspBI CTAG 1 cut(s) 199
GluI GCNGC 1 cut(s) 160
HaeIII GGCC 1 cut(s) 72
HapII CCGG 1 cut(s) 24
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 24
HphI GGTGA 2 cut(s) 109, 146
Hpy188I TCNGA 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
LpnPI CCDG 6 cut(s) 37, 43, 54, 70, 80, 194
MaeI CTAG 1 cut(s) 199
MboII GAAGA 1 cut(s) 112
MluCI AATT 2 cut(s) 108, 127
MnlI CCTC 2 cut(s) 81, 162
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 25, 58
MvaI CCWGG 1 cut(s) 58
MwoI GCNNNNNNNGC 1 cut(s) 29
NciI CCSGG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 79
PfoI TCCNGGA 1 cut(s) 56
PkrI GCNGC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 56
PspGI CCWGG 1 cut(s) 56
PspN4I GGNNCC 1 cut(s) 10
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 20
SatI GCNGC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 2 cut(s) 25, 58
SetI ASST 2 cut(s) 19, 99
SgeI CNNG 7 cut(s) 36, 37, 69, 70, 81, 107, 193
SinI GGWCC 1 cut(s) 149
Sse9I AATT 2 cut(s) 108, 127
SsiI CCGC 2 cut(s) 157, 160
SspMI CTAG 1 cut(s) 199
StyD4I CCNGG 2 cut(s) 23, 56
TaaI ACNGT 1 cut(s) 44
TasI AATT 2 cut(s) 108, 127
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 79
TspDTI ATGAA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 149
XspI CTAG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.