Rh5BG051300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011535
Physical Location & Seq
Reverse (-)
4086389 .. 4086592
204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG051300.1

Sequence Viewer

Length: 204 bp
ATGGAGAGTTCCACTGCCACTGCCATTTCCGGGAGAGCCATGTTGAACAGTGGAGTTTATTCGCGGCGGTTTCCTGCCGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGATTGGCCAATTCTGTGGCTTCCCTCTTCACTCCTCATGGTCCATCCATGCACAAGCAGCATTCAACCAAGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.08

Weight (kDa)

11.85

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 81
AccII CGCG 1 cut(s) 64
AciI CCGC 2 cut(s) 64, 67
AcoI YGGCCR 1 cut(s) 132
AcyI GRCGYC 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 30, 98
AgsI TTSAA 2 cut(s) 46, 192
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 167
AsuC2I CCSGG 2 cut(s) 31, 79
AvaII GGWCC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 134
BanI GGYRCC 1 cut(s) 81
BbvI GCAGC 1 cut(s) 196
BccI CCATC 2 cut(s) 106, 178
BcnI CCSGG 2 cut(s) 31, 79
BfoI RGCGCY 1 cut(s) 85
BisI GCNGC 2 cut(s) 65, 185
BlsI GCNGC 2 cut(s) 66, 186
Bme1390I CCNGG 2 cut(s) 31, 79
Bme18I GGWCC 1 cut(s) 167
BmgT120I GGNCC 1 cut(s) 167
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 2 cut(s) 31, 79
BpuMI CCSGG 2 cut(s) 31, 79
BsaHI GRCGYC 1 cut(s) 82
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 98
BseGI GGATG 1 cut(s) 170
BseLI CCNNNNNNNGG 2 cut(s) 30, 98
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 81
BsiSI CCGG 2 cut(s) 30, 78
BslI CCNNNNNNNGG 2 cut(s) 30, 98
BsmI GAATGC 1 cut(s) 187
BsnI GGCC 1 cut(s) 134
BspACI CCGC 2 cut(s) 64, 67
BspANI GGCC 1 cut(s) 134
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 1 cut(s) 83
BspT107I GGYRCC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 89, 158
BstACI GRCGYC 1 cut(s) 82
BstF5I GGATG 1 cut(s) 170
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 1 cut(s) 85
BstHHI GCGC 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 29, 77
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 196
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 12, 18
BtsIMutI CAGTG 3 cut(s) 12, 18, 55
CfoI GCGC 1 cut(s) 84
Cfr13I GGNCC 1 cut(s) 167
CviAII CATG 3 cut(s) 40, 164, 175
CviJI RGCY 3 cut(s) 38, 134, 146
CviKI_1 RGCY 3 cut(s) 38, 134, 146
DinI GGCGCC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 2 cut(s) 89, 158
EarI CTCTTC 2 cut(s) 89, 158
Eco47I GGWCC 1 cut(s) 167
EgeI GGCGCC 1 cut(s) 83
EheI GGCGCC 1 cut(s) 83
FaeI CATG 3 cut(s) 43, 167, 178
FaiI YATR 3 cut(s) 41, 165, 176
FatI CATG 3 cut(s) 39, 163, 174
Fnu4HI GCNGC 2 cut(s) 65, 185
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 2 cut(s) 65, 185
GlaI GCGC 1 cut(s) 83
GluI GCNGC 2 cut(s) 65, 185
HaeII RGCGCY 1 cut(s) 85
HaeIII GGCC 1 cut(s) 134
HapII CCGG 2 cut(s) 30, 78
HhaI GCGC 1 cut(s) 84
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 3 cut(s) 43, 167, 178
Hin6I GCGC 1 cut(s) 82
HinP1I GCGC 1 cut(s) 82
HpaII CCGG 2 cut(s) 30, 78
Hpy188I TCNGA 1 cut(s) 93
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 178
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 3 cut(s) 43, 167, 178
HspAI GCGC 1 cut(s) 82
KasI GGCGCC 1 cut(s) 81
LpnPI CCDG 3 cut(s) 43, 87, 91
Lsp1109I GCAGC 1 cut(s) 196
MboII GAAGA 3 cut(s) 106, 121, 145
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 1 cut(s) 136
MluNI TGGCCA 1 cut(s) 134
Mly113I GGCGCC 1 cut(s) 82
MnlI CCTC 3 cut(s) 90, 161, 171
Mox20I TGGCCA 1 cut(s) 134
MscI TGGCCA 1 cut(s) 134
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 30, 78
MspR9I CCNGG 2 cut(s) 31, 79
Mva1269I GAATGC 1 cut(s) 187
MvnI CGCG 1 cut(s) 64
MwoI GCNNNNNNNGC 1 cut(s) 184
NarI GGCGCC 1 cut(s) 82
NciI CCSGG 2 cut(s) 31, 79
NlaIII CATG 3 cut(s) 43, 167, 178
NlaIV GGNNCC 1 cut(s) 83
PctI GAATGC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 29
PkrI GCNGC 2 cut(s) 66, 186
PluTI GGCGCC 1 cut(s) 85
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 1 cut(s) 167
SatI GCNGC 2 cut(s) 65, 185
Sau96I GGNCC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 31, 79
SfoI GGCGCC 1 cut(s) 83
SinI GGWCC 1 cut(s) 167
Sse9I AATT 1 cut(s) 136
SsiI CCGC 2 cut(s) 64, 67
SspDI GGCGCC 1 cut(s) 81
StyD4I CCNGG 2 cut(s) 29, 77
TaaI ACNGT 1 cut(s) 50
TasI AATT 1 cut(s) 136
TauI GCSGC 1 cut(s) 67
TscAI CASTG 3 cut(s) 19, 25, 55
TseI GCWGC 1 cut(s) 184
TspRI CASTG 3 cut(s) 19, 25, 55
VpaK11BI GGWCC 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.