RLG00000031430

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011535
Physical Location & Seq
Reverse (-)
5085778 .. 5089114
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031430

Sequence Viewer

Length: 348 bp
ATGGAGAGTTCCACTGCCACTGCCATTTCCGGGAGAGCCATGATGAACATTGGAGTTTATTCGCGGCGGTTTCCTGCCGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGAGTCCAGAGAAGTTAGCACAGATGGAGCATTCCACAGCCACGGCCACTTCCAGGAGAGCAAAGATGAACGCCAGTGACTTCTCACGGCGGTTTCCTGCGGGGCGCCCTATTCCGAAGAGGGGTCAAGTGAAGATGGGGATAGTGGTGGGACTGGCCAATTCTGTGGCTTCCATTTTCACTCCTCAGCTTCCAGCCATGTACAAGCAGCATTCTAGTGACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

12.44

Weight (kDa)

11.62

Isoelectric Point (pI)

68.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 81, 225
AccII CGCG 1 cut(s) 64
AciI CCGC 4 cut(s) 64, 67, 211, 221
AcoI YGGCCR 2 cut(s) 165, 276
AcyI GRCGYC 2 cut(s) 82, 226
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 4 cut(s) 30, 98, 174, 242
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 1 cut(s) 310
AluI AGCT 1 cut(s) 310
AoxI GGCC 2 cut(s) 165, 276
ApeKI GCWGC 1 cut(s) 328
AspLEI GCGC 2 cut(s) 84, 228
AsuC2I CCSGG 2 cut(s) 31, 79
BalI TGGCCA 1 cut(s) 278
BanI GGYRCC 2 cut(s) 81, 225
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 1 cut(s) 340
BccI CCATC 3 cut(s) 106, 139, 250
BceAI ACGGC 2 cut(s) 180, 224
BciT130I CCWGG 1 cut(s) 175
BcnI CCSGG 2 cut(s) 31, 79
BfaI CTAG 1 cut(s) 336
BfoI RGCGCY 2 cut(s) 85, 229
BisI GCNGC 2 cut(s) 65, 329
BlsI GCNGC 2 cut(s) 66, 330
Bme1390I CCNGG 3 cut(s) 31, 79, 175
BmiI GGNNCC 2 cut(s) 83, 227
BmrFI CCNGG 3 cut(s) 31, 79, 175
Bpu10I CCTNAGC 1 cut(s) 306
BpuMI CCSGG 2 cut(s) 31, 79
BsaHI GRCGYC 2 cut(s) 82, 226
BsaJI CCNNGG 1 cut(s) 162
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 98, 174, 242
Bse1I ACTGG 2 cut(s) 195, 279
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 1 cut(s) 162
BseLI CCNNNNNNNGG 4 cut(s) 30, 98, 174, 242
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 2 cut(s) 195, 279
BseRI GAGGAG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 64
BshFI GGCC 2 cut(s) 167, 278
BshNI GGYRCC 2 cut(s) 81, 225
BsiSI CCGG 2 cut(s) 30, 78
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 4 cut(s) 30, 98, 174, 242
BsmFI GGGAC 1 cut(s) 285
BsmI GAATGC 2 cut(s) 151, 331
BsnI GGCC 2 cut(s) 167, 278
Bsp1407I TGTACA 1 cut(s) 321
BspACI CCGC 4 cut(s) 64, 67, 211, 221
BspANI GGCC 2 cut(s) 167, 278
BspCNI CTCAG 1 cut(s) 319
BspFNI CGCG 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 83, 227
BspT107I GGYRCC 2 cut(s) 81, 225
BsrGI TGTACA 1 cut(s) 321
BsrI ACTGG 2 cut(s) 195, 279
BssECI CCNNGG 1 cut(s) 162
BssNI GRCGYC 2 cut(s) 82, 226
Bst2UI CCWGG 1 cut(s) 175
Bst6I CTCTTC 2 cut(s) 89, 233
BstACI GRCGYC 2 cut(s) 82, 226
BstAUI TGTACA 1 cut(s) 321
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 162
BstFNI CGCG 1 cut(s) 64
BstH2I RGCGCY 2 cut(s) 85, 229
BstHHI GCGC 2 cut(s) 84, 228
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 3 cut(s) 29, 77, 173
BstUI CGCG 1 cut(s) 64
BstV1I GCAGC 1 cut(s) 340
BstXI CCANNNNNNTGG 1 cut(s) 286
BsuRI GGCC 2 cut(s) 167, 278
BtgI CCRYGG 1 cut(s) 162
BtsI GCAGTG 2 cut(s) 12, 18
BtsIMutI CAGTG 3 cut(s) 12, 18, 202
CfoI GCGC 2 cut(s) 84, 228
Csp6I GTAC 1 cut(s) 322
CviAII CATG 2 cut(s) 40, 319
CviJI RGCY 7 cut(s) 38, 161, 167, 278, 290, 310, 317
CviKI_1 RGCY 7 cut(s) 38, 161, 167, 278, 290, 310, 317
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 306
DinI GGCGCC 2 cut(s) 83, 227
EaeI YGGCCR 2 cut(s) 165, 276
Eam1104I CTCTTC 2 cut(s) 89, 233
EarI CTCTTC 2 cut(s) 89, 233
EcoRII CCWGG 1 cut(s) 173
EgeI GGCGCC 2 cut(s) 83, 227
EheI GGCGCC 2 cut(s) 83, 227
FaeI CATG 2 cut(s) 43, 322
FaiI YATR 2 cut(s) 41, 320
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 39, 318
FauI CCCGC 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 65, 329
Fsp4HI GCNGC 2 cut(s) 65, 329
FspBI CTAG 1 cut(s) 336
GlaI GCGC 2 cut(s) 83, 227
GluI GCNGC 2 cut(s) 65, 329
HaeII RGCGCY 2 cut(s) 85, 229
HaeIII GGCC 2 cut(s) 167, 278
HapII CCGG 2 cut(s) 30, 78
HhaI GCGC 2 cut(s) 84, 228
Hin1I GRCGYC 2 cut(s) 82, 226
Hin1II CATG 2 cut(s) 43, 322
Hin6I GCGC 2 cut(s) 82, 226
HinP1I GCGC 2 cut(s) 82, 226
HinfI GANTC 2 cut(s) 124, 341
HpaII CCGG 2 cut(s) 30, 78
Hpy188I TCNGA 2 cut(s) 93, 237
Hpy188III TCNNGA 1 cut(s) 128
HpyF3I CTNAG 1 cut(s) 306
Hsp92I GRCGYC 2 cut(s) 82, 226
Hsp92II CATG 2 cut(s) 43, 322
HspAI GCGC 2 cut(s) 82, 226
KasI GGCGCC 2 cut(s) 81, 225
LmnI GCTCC 1 cut(s) 148
Lsp1109I GCAGC 1 cut(s) 340
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 197, 338
MboII GAAGA 4 cut(s) 106, 121, 250, 265
MlsI TGGCCA 1 cut(s) 278
MluCI AATT 1 cut(s) 280
MluNI TGGCCA 1 cut(s) 278
Mly113I GGCGCC 2 cut(s) 82, 226
MlyI GAGTC 2 cut(s) 133, 335
MnlI CCTC 3 cut(s) 90, 234, 315
Mox20I TGGCCA 1 cut(s) 278
MscI TGGCCA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 278
MspI CCGG 2 cut(s) 30, 78
MspR9I CCNGG 3 cut(s) 31, 79, 175
Mva1269I GAATGC 2 cut(s) 151, 331
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 64
NarI GGCGCC 2 cut(s) 82, 226
NciI CCSGG 2 cut(s) 31, 79
NlaIII CATG 2 cut(s) 43, 322
NlaIV GGNNCC 2 cut(s) 83, 227
NmuCI GTSAC 2 cut(s) 197, 338
PctI GAATGC 2 cut(s) 151, 331
PfoI TCCNGGA 2 cut(s) 29, 173
PkrI GCNGC 2 cut(s) 66, 330
PleI GAGTC 2 cut(s) 132, 335
PluTI GGCGCC 2 cut(s) 85, 229
PpsI GAGTC 2 cut(s) 132, 335
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 83, 227
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 1 cut(s) 336
SatI GCNGC 2 cut(s) 65, 329
SchI GAGTC 2 cut(s) 133, 335
ScrFI CCNGG 3 cut(s) 31, 79, 175
SetI ASST 1 cut(s) 312
SfoI GGCGCC 2 cut(s) 83, 227
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 1 cut(s) 280
SsiI CCGC 4 cut(s) 64, 67, 211, 221
SspDI GGCGCC 2 cut(s) 81, 225
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 29, 77, 173
TasI AATT 1 cut(s) 280
TatI WGTACW 1 cut(s) 321
TauI GCSGC 1 cut(s) 67
TscAI CASTG 3 cut(s) 19, 25, 202
TseFI GTSAC 2 cut(s) 197, 338
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 2 cut(s) 197, 338
TspDTI ATGAA 2 cut(s) 59, 203
TspRI CASTG 3 cut(s) 19, 25, 202
XspI CTAG 1 cut(s) 336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.