Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0014817

Physical Location & Seq

Genomic Coordinates Forward (+)

45561093 .. 45562816

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1331800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGTTCTTAACACTCAAAGTTTTTGTGTTTTCTTCACCTTACTTTTCTTCACTTTGCTTCTTCTGTCACTGGTTTCTCGTGCCGTAGAAGTTCACGACATAACTCCGTTGCGACCGTTAGCTCAGGGACAAACTCTTGTCTCGGCAGGCAACGTTTTCGAGTTGGGATTCTTCAGTCCTAATAATTCTGCTAATAAGTACGTGGGGATATGGTACAAACATATACTTCCTCGAAAAGTCGTGTGGGTTGCCAACAGAGAAAAGCCTCTTGCAGTTACAGATACCTTGGCTGGTTTGACAATCAGCAGCAATGGGAATTTGGAGCTTGTTGCAGTGTACCAGCTGATCGGTACTTGTGGGAGAGCTTTCATTATCCTAGTGACACACTTCTACCGCGAATGCTTGTTGGTAATTTGGATCAATGGATCGACTCCCTATTGGAGAATCGGGCCGTGGGATAAATCAAAGTTCATCGGCGTGCCAGGAATGGATGATCAATATCGAAGTGGATTTAATCTCGAGGATAATGCGCAGCAGGGAACAAAGTATTTCTCTTTTAATTTGTTTGCTAAAACTATTGAAGCATTTATGGACGTCTCTTTCGAAGGTGTATTAAGGCTTATCTATACAAAACATAGCGAGAACTGGAAAACTTTCTGGGAAGCCCCAGCGGCAAAGAATCCATGTGACAAGTATGGAGCATGTGGGCCTTTTGGGGTTTGCAAATCTTCTGAATCTCCAATCTGCAAGTGTTTGAAAGGGTTCGTGCCGAAGTCACATGAGGAATGGAGCAGAGGAAACAGGGCAGAAGGGTGTGTGAGGCAAGCCAAATTGTTTTGTGAAAGTACCACAAAGTGCAAGATACAATGCCTAAGTAATTGCTCTTGCCTGGCTTACGTGTATGTTGACAACATCGGATGTTTGATCTGGTCCAATGAACTAATAGATATTCAGGAGTTTTCATCTAATGGAGAAGATATTTTTATTCGCCTCCAACACACAAAATCTGTTGCCAAATTAGGAAACATCAAGGCAACAGCAAAGTTTGAACATACTGATCTGAATGAAAATTCAAGTGGCGGCACTGTTCAAGAATATATAAGAGAACATGAGCGGTCGGAGCTATTCCTCTATAGGTTTGACAGCATATCAATTGCTACGAACAATTTCAGCATCCCAAACAAACTCGGGGAAGGGGGATTTGTGTTGGAGTATGTGGCCAAGTGGCCAACTTTTGGCTATAAACAATTCAAAAGAAAAAAGACACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

424

Amino Acids

47.84

Weight (kDa)

8.61

Isoelectric Point (pI)

30.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S_locus_glycop	PF00954	147 - 259	2.4e-27	S-locus glycoprotein domain
PAN_2	PF08276	283 - 317	7.2e-10	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014817)

Species	Orthologous Gene IDs
malus_domestica	MD05G1331800.v1.1
rosa_chinensis	RchiOBHm_Chr1g0319261 RchiOBHm_Chr3g0485181 RchiOBHm_Chr5g0005271
rosa_multiflora	Rmu_co8365119.1_g000001 Rmu_sc0003574.1_g000004 Rmu_sc0005072.1_g000020
rosa_roxburghii	Rroxscaffold_7G00196510
rosa_rugosa	Rorug01G0087200 Rorug03G0199900 Rorug06G0067000
rosa_samantha	Rh1BG035300 Rh1BG035600 Rh5CG049000 Rh5CG049700 Rh5CG051700 Rh5CG051900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	597
Acc16I	TGCGCA	1 cut(s)	531
AccB7I	CCANNNNNTGG	1 cut(s)	1235
AccBSI	CCGCTC	1 cut(s)	1114
AccII	CGCG	1 cut(s)	396
AciI	CCGC	4 cut(s)	394, 671, 1080, 1114
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	425, 433
AcoI	YGGCCR	2 cut(s)	1218, 1226
AcsI	RAATTY	2 cut(s)	316, 1069
AcuI	CTGAAG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	594
AdeI	CACNNNGTG	1 cut(s)	855
AfaI	GTAC	5 cut(s)	200, 215, 338, 352, 847
AfiI	CCNNNNNNNGG	1 cut(s)	1235
AflIII	ACRYGT	1 cut(s)	897
AgsI	TTSAA	6 cut(s)	581, 757, 1049, 1074, 1091, 1252
AjnI	CCWGG	2 cut(s)	481, 888
AluBI	AGCT	5 cut(s)	122, 325, 343, 365, 1123
AluI	AGCT	5 cut(s)	122, 325, 343, 365, 1123
Alw26I	GTCTC	2 cut(s)	145, 601
AlwI	GGATC	2 cut(s)	425, 433
Ama87I	CYCGRG	2 cut(s)	518, 1187
AoxI	GGCC	4 cut(s)	449, 707, 1218, 1226
ApeKI	GCWGC	2 cut(s)	306, 532
ApoI	RAATTY	2 cut(s)	316, 1069
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
Asp700I	GAANNNNTTC	3 cut(s)	653, 761, 1166
AspLEI	GCGC	1 cut(s)	532
AspS9I	GGNCC	3 cut(s)	449, 707, 930
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	603
AvaI	CYCGRG	2 cut(s)	518, 1187
AvaII	GGWCC	1 cut(s)	930
BalI	TGGCCA	2 cut(s)	1220, 1228
BauI	CACGAG	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	318, 544
BceAI	ACGGC	2 cut(s)	68, 436
BcgI	CGANNNNNNTGC	4 cut(s)	139, 173, 509, 543
BciT130I	CCWGG	2 cut(s)	483, 890
BclI	TGATCA	1 cut(s)	493
BcoDI	GTCTC	2 cut(s)	145, 601
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	1132
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	307, 533, 672, 1081
BlsI	GCNGC	4 cut(s)	308, 534, 673, 1082
Bme1390I	CCNGG	2 cut(s)	483, 890
Bme18I	GGWCC	1 cut(s)	930
BmeT110I	CYCGRG	2 cut(s)	518, 1187
BmgT120I	GGNCC	3 cut(s)	449, 707, 930
BmrFI	CCNGG	2 cut(s)	483, 890
BmsI	GCATC	1 cut(s)	1182
Bpu10I	CCTNAGC	1 cut(s)	123
Bpu14I	TTCGAA	1 cut(s)	603
BsaAI	YACGTR	2 cut(s)	202, 898
BsaBI	GATNNNNATC	1 cut(s)	498
BsaHI	GRCGYC	1 cut(s)	594
BsaJI	CCNNGG	2 cut(s)	285, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	1235
Bse1I	ACTGG	2 cut(s)	75, 650
Bse3DI	GCAATG	1 cut(s)	316
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	483, 890
BseDI	CCNNGG	2 cut(s)	285, 452
BseGI	GGATG	3 cut(s)	496, 923, 1173
BseJI	GATNNNNATC	1 cut(s)	498
BseLI	CCNNNNNNNGG	1 cut(s)	1235
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	1 cut(s)	137
BseNI	ACTGG	2 cut(s)	75, 650
BseXI	GCAGC	2 cut(s)	318, 544
BseYI	CCCAGC	1 cut(s)	667
Bsh1236I	CGCG	1 cut(s)	396
Bsh1285I	CGRYCG	2 cut(s)	116, 1118
BshFI	GGCC	4 cut(s)	451, 709, 1220, 1228
BsiEI	CGRYCG	2 cut(s)	116, 1118
BsiHKCI	CYCGRG	2 cut(s)	518, 1187
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	1235
BsmAI	GTCTC	2 cut(s)	145, 601
BsmBI	CGTCTC	1 cut(s)	601
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	4 cut(s)	451, 709, 1220, 1228
BsoBI	CYCGRG	2 cut(s)	518, 1187
Bsp119I	TTCGAA	1 cut(s)	603
Bsp143I	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
BspACI	CCGC	4 cut(s)	394, 671, 1080, 1114
BspANI	GGCC	4 cut(s)	451, 709, 1220, 1228
BspCNI	CTCAG	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	396
BspPI	GGATC	2 cut(s)	425, 433
BspT104I	TTCGAA	1 cut(s)	603
BsrBI	CCGCTC	1 cut(s)	1114
BsrDI	GCAATG	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	75, 650
BssECI	CCNNGG	2 cut(s)	285, 452
BssMI	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
BssNI	GRCGYC	1 cut(s)	594
BssSI	CACGAG	1 cut(s)	78
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	483, 890
Bst4CI	ACNGT	2 cut(s)	117, 1087
BstACI	GRCGYC	1 cut(s)	594
BstBAI	YACGTR	2 cut(s)	202, 898
BstBI	TTCGAA	1 cut(s)	603
BstC8I	GCNNGC	3 cut(s)	148, 479, 825
BstDEI	CTNAG	2 cut(s)	123, 872
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	496, 923, 1173
BstFNI	CGCG	1 cut(s)	396
BstHHI	GCGC	1 cut(s)	532
BstKTI	GATC	6 cut(s)	348, 420, 428, 496, 927, 1060
BstMAI	GTCTC	2 cut(s)	145, 601
BstMBI	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
BstMCI	CGRYCG	2 cut(s)	116, 1118
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 1120
BstNI	CCWGG	2 cut(s)	483, 890
BstNSI	RCATGY	1 cut(s)	705
BstSCI	CCNGG	2 cut(s)	481, 888
BstSFI	CTRYAG	1 cut(s)	1132
BstUI	CGCG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	318, 544
BsuRI	GGCC	4 cut(s)	451, 709, 1220, 1228
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	496, 923, 1173
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	68, 339, 1083
Cac8I	GCNNGC	3 cut(s)	148, 479, 825
CfoI	GCGC	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	449, 707, 930
Csp6I	GTAC	5 cut(s)	199, 214, 337, 351, 846
CviAII	CATG	5 cut(s)	684, 702, 779, 1109, 1269
CviQI	GTAC	5 cut(s)	199, 214, 337, 351, 846
DdeI	CTNAG	2 cut(s)	123, 872
DpnI	GATC	6 cut(s)	347, 419, 427, 495, 926, 1059
DpnII	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
DraIII	CACNNNGTG	1 cut(s)	855
EaeI	YGGCCR	2 cut(s)	1218, 1226
Eco130I	CCWWGG	1 cut(s)	285
Eco47I	GGWCC	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	157
Eco88I	CYCGRG	2 cut(s)	518, 1187
EcoRII	CCWGG	2 cut(s)	481, 888
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
Esp3I	CGTCTC	1 cut(s)	601
FaeI	CATG	5 cut(s)	687, 705, 782, 1112, 1272
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	5 cut(s)	683, 701, 778, 1108, 1268
FbaI	TGATCA	1 cut(s)	493
Fnu4HI	GCNGC	4 cut(s)	307, 533, 672, 1081
FokI	GGATG	3 cut(s)	503, 930, 1160
Fsp4HI	GCNGC	4 cut(s)	307, 533, 672, 1081
FspBI	CTAG	1 cut(s)	377
FspI	TGCGCA	1 cut(s)	531
GlaI	GCGC	1 cut(s)	531
GluI	GCNGC	4 cut(s)	307, 533, 672, 1081
GsaI	CCCAGC	1 cut(s)	671
HaeIII	GGCC	4 cut(s)	451, 709, 1220, 1228
HhaI	GCGC	1 cut(s)	532
Hin1I	GRCGYC	1 cut(s)	594
Hin1II	CATG	5 cut(s)	687, 705, 782, 1112, 1272
Hin6I	GCGC	1 cut(s)	530
HinP1I	GCGC	1 cut(s)	530
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	5 cut(s)	168, 430, 444, 679, 734
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	3 cut(s)	94, 337, 907
Hpy188I	TCNGA	4 cut(s)	733, 917, 1062, 1120
Hpy188III	TCNNGA	4 cut(s)	95, 518, 953, 1091
Hpy8I	GTNNAC	3 cut(s)	94, 337, 907
HpyAV	CCTTC	3 cut(s)	599, 803, 1187
HpyCH4III	ACNGT	2 cut(s)	117, 1087
HpyCH4IV	ACGT	4 cut(s)	153, 201, 594, 897
HpyCH4V	TGCA	5 cut(s)	272, 332, 723, 747, 858
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 1120
HpyF3I	CTNAG	2 cut(s)	123, 872
HpySE526I	ACGT	4 cut(s)	153, 201, 594, 897
Hsp92I	GRCGYC	1 cut(s)	594
Hsp92II	CATG	5 cut(s)	687, 705, 782, 1112, 1272
HspAI	GCGC	1 cut(s)	530
Ksp22I	TGATCA	1 cut(s)	493
Kzo9I	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
LmnI	GCTCC	4 cut(s)	322, 698, 789, 1120
Lsp1109I	GCAGC	2 cut(s)	318, 544
LweI	GCATC	1 cut(s)	1182
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	4 cut(s)	153, 201, 594, 897
MaeIII	GTNAC	5 cut(s)	66, 274, 379, 686, 774
MalI	GATC	6 cut(s)	347, 419, 427, 495, 926, 1059
MbiI	CCGCTC	1 cut(s)	1114
MboI	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
MboII	GAAGA	6 cut(s)	25, 40, 53, 163, 720, 986
MfeI	CAATTG	1 cut(s)	1152
MlsI	TGGCCA	2 cut(s)	1220, 1228
MluNI	TGGCCA	2 cut(s)	1220, 1228
MlyI	GAGTC	1 cut(s)	424
MmeI	TCCRAC	3 cut(s)	1018, 1098, 1188
MnlI	CCTC	8 cut(s)	240, 276, 514, 775, 788, 813, 1001, 1139
Mox20I	TGGCCA	2 cut(s)	1220, 1228
MroXI	GAANNNNTTC	3 cut(s)	653, 761, 1166
MscI	TGGCCA	2 cut(s)	1220, 1228
MseI	TTAA	4 cut(s)	9, 513, 558, 614
MslI	CAYNNNNRTG	1 cut(s)	476
Msp20I	TGGCCA	2 cut(s)	1220, 1228
MspA1I	CMGCKG	2 cut(s)	343, 671
MspR9I	CCNGG	2 cut(s)	483, 890
MunI	CAATTG	1 cut(s)	1152
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	483, 890
MvnI	CGCG	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	671, 1120
NdeII	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
NlaIII	CATG	5 cut(s)	687, 705, 782, 1112, 1272
NmeAIII	GCCGAG	1 cut(s)	122
NmuCI	GTSAC	4 cut(s)	66, 379, 686, 774
NsbI	TGCGCA	1 cut(s)	531
NspI	RCATGY	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	603
PaeR7I	CTCGAG	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	3 cut(s)	653, 761, 1166
PfeI	GAWTC	4 cut(s)	168, 444, 679, 734
PflMI	CCANNNNNTGG	1 cut(s)	1235
PkrI	GCNGC	4 cut(s)	308, 534, 673, 1082
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	2 cut(s)	202, 898
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	481, 888
PspFI	CCCAGC	1 cut(s)	667
PspGI	CCWGG	2 cut(s)	481, 888
PspPI	GGNCC	3 cut(s)	449, 707, 930
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	5 cut(s)	200, 215, 338, 352, 847
RsaNI	GTAC	5 cut(s)	199, 214, 337, 351, 846
RseI	CAYNNNNRTG	1 cut(s)	476
SaqAI	TTAA	4 cut(s)	9, 513, 558, 614
SatI	GCNGC	4 cut(s)	307, 533, 672, 1081
Sau3AI	GATC	6 cut(s)	345, 417, 425, 493, 924, 1057
Sau96I	GGNCC	3 cut(s)	449, 707, 930
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	2 cut(s)	483, 890
SfaNI	GCATC	1 cut(s)	1182
SfcI	CTRYAG	1 cut(s)	1132
Sfr274I	CTCGAG	1 cut(s)	518
SfuI	TTCGAA	1 cut(s)	603
SinI	GGWCC	1 cut(s)	930
SlaI	CTCGAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
SsiI	CCGC	4 cut(s)	394, 671, 1080, 1114
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	481, 888
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	2 cut(s)	117, 1087
TaiI	ACGT	4 cut(s)	156, 204, 597, 900
TaqI	TCGA	6 cut(s)	159, 232, 428, 502, 519, 603
TauI	GCSGC	2 cut(s)	674, 1083
TfiI	GAWTC	4 cut(s)	168, 444, 679, 734
Tru1I	TTAA	4 cut(s)	9, 513, 558, 614
Tru9I	TTAA	4 cut(s)	9, 513, 558, 614
TscAI	CASTG	3 cut(s)	75, 339, 1090
TseFI	GTSAC	4 cut(s)	66, 379, 686, 774
TseI	GCWGC	2 cut(s)	306, 532
Tsp45I	GTSAC	4 cut(s)	66, 379, 686, 774
TspDTI	ATGAA	5 cut(s)	358, 460, 951, 951, 1080
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	3 cut(s)	75, 339, 1090
Van91I	CCANNNNNTGG	1 cut(s)	1235
VpaK11BI	GGWCC	1 cut(s)	930
XapI	RAATTY	2 cut(s)	316, 1069
XceI	RCATGY	1 cut(s)	705
XhoI	CTCGAG	1 cut(s)	518
XmnI	GAANNNNTTC	3 cut(s)	653, 761, 1166
XspI	CTAG	1 cut(s)	377
ZraI	GACGTC	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.