Rorug01G0087200

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0014817
Physical Location & Seq
Reverse (-)
14115858 .. 14119194
3337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0087200.1

Sequence Viewer

Length: 765 bp
ATGGCTGCTGTGAGGCTTGGGCCCAAAGATTTTCACCGACGGCTACTTCTCCTTGTACCCCTGCTAGCTCGAAGAGGCCAACATCGAGTGTGGCGAGATCTCAAAATTTACATATCTCAAACCCGGCAGCTGTTCCAGTCTCACGCTCCACCTTCTTCATTTTATACATCGAGCTATCCATGTAATTGGCTCTTCATAGCTGCTTCAATATATTCTCAATTAATCATTCATCCCTTTGTTGCAGAACGCATCTACTTGGGTTCTGATAAGAACCCATATAGAGCTCTCATTGTACTAGTTGATATATTCTATCCATGGCAGCAGTCTCTCTCTTTTCCTCTGCGACTAGTCTTCCCACCCTTTGGAGCTCGCTGTCACCGCCATTGCCTCGAACCGAAGAAGCTCTCAGTACCCTGGCATTGTGATGAATACAATTCAGTCAAGGGCACTGGTTGGAATAGTACAGGTTCCATTGGAGAGGTACCAATTTTGGTGGTGAAGCTTCAAGCTTACATGAATTATAGTGGGGAAGCGGTGTGGGGTGATCTTTCCGATGCTGATCTAAGAGGTGCAGACTTATCCTTGGCCAATGTGACAAAGCTAAATTTGAGCAATGCCAACTTGGAAGGTGCATTTACTACAGACAACATATCTTTCAAAGGATCAACTGCCACTTCCAAAGAGGAGCACTCCAAAGTTGCCGGAATACACCAAGGACTGGAAACTCAAGTTACAACTGGTATTCTCATTGTGAAACTTCTCTAG

Protein Analysis

254

Amino Acids

28.53

Weight (kDa)

9.26

Isoelectric Point (pI)

36.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pentapeptide PF00805 182 - 211 9.9e-06 Pentapeptide repeats (8 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 481
AccB1I GGYRCC 1 cut(s) 481
AccB7I CCANNNNNTGG 2 cut(s) 362, 718
AciI CCGC 2 cut(s) 379, 533
AclWI GGATC 1 cut(s) 670
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 2 cut(s) 105, 604
AfaI GTAC 5 cut(s) 57, 294, 411, 463, 483
AfiI CCNNNNNNNGG 2 cut(s) 362, 718
AgsI TTSAA 3 cut(s) 207, 506, 658
AhlI ACTAGT 2 cut(s) 295, 346
AjnI CCWGG 1 cut(s) 413
Alw21I GWGCWC 3 cut(s) 286, 370, 690
Alw26I GTCTC 2 cut(s) 144, 330
AlwI GGATC 1 cut(s) 670
AoxI GGCC 3 cut(s) 20, 76, 585
ApaI GGGCCC 1 cut(s) 24
ApeKI GCWGC 4 cut(s) 5, 127, 200, 319
ApoI RAATTY 2 cut(s) 105, 604
AseI ATTAAT 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 481
AspS9I GGNCC 2 cut(s) 20, 21
AsuC2I CCSGG 1 cut(s) 124
AsuHPI GGTGA 4 cut(s) 26, 368, 508, 554
AsuNHI GCTAGC 1 cut(s) 64
BaeGI GKGCMC 2 cut(s) 24, 449
BalI TGGCCA 1 cut(s) 587
BanI GGYRCC 1 cut(s) 481
BanII GRGCYC 3 cut(s) 24, 286, 370
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 3 cut(s) 286, 370, 690
BbvI GCAGC 3 cut(s) 139, 187, 331
BceAI ACGGC 1 cut(s) 56
BciT130I CCWGG 1 cut(s) 415
BcnI CCSGG 1 cut(s) 124
BcoDI GTCTC 2 cut(s) 144, 330
BcuI ACTAGT 2 cut(s) 295, 346
BfaI CTAG 4 cut(s) 65, 296, 347, 763
BfmI CTRYAG 1 cut(s) 639
BglII AGATCT 1 cut(s) 97
BisI GCNGC 4 cut(s) 6, 128, 201, 320
BlsI GCNGC 4 cut(s) 7, 129, 202, 321
Bme1390I CCNGG 2 cut(s) 124, 415
BmgT120I GGNCC 2 cut(s) 20, 21
BmiI GGNNCC 3 cut(s) 22, 469, 483
BmrFI CCNGG 2 cut(s) 124, 415
BmsI GCATC 2 cut(s) 258, 544
BmtI GCTAGC 1 cut(s) 68
BpiI GAAGAC 1 cut(s) 343
BplI GAGNNNNNCTC 2 cut(s) 674, 706
BpuEI CTTGAG 1 cut(s) 711
BpuMI CCSGG 1 cut(s) 124
BsaBI GATNNNNATC 1 cut(s) 558
BsaJI CCNNGG 4 cut(s) 314, 413, 582, 712
Bsc4I CCNNNNNNNGG 2 cut(s) 362, 718
Bse1I ACTGG 4 cut(s) 136, 454, 723, 742
Bse3DI GCAATG 2 cut(s) 382, 619
Bse8I GATNNNNATC 1 cut(s) 558
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 4 cut(s) 314, 413, 582, 712
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 558
BseLI CCNNNNNNNGG 2 cut(s) 362, 718
BseMI GCAATG 2 cut(s) 382, 619
BseMII CTCAG 1 cut(s) 420
BseNI ACTGG 4 cut(s) 136, 454, 723, 742
BseRI GAGGAG 1 cut(s) 698
BseSI GKGCMC 2 cut(s) 24, 449
BseXI GCAGC 3 cut(s) 139, 187, 331
BsgI GTGCAG 1 cut(s) 591
BshFI GGCC 3 cut(s) 22, 78, 587
BshNI GGYRCC 1 cut(s) 481
BsiHKAI GWGCWC 3 cut(s) 286, 370, 690
BsiSI CCGG 2 cut(s) 124, 702
BslI CCNNNNNNNGG 2 cut(s) 362, 718
BsmAI GTCTC 2 cut(s) 144, 330
BsnI GGCC 3 cut(s) 22, 78, 587
Bsp120I GGGCCC 1 cut(s) 20
Bsp1286I GDGCHC 5 cut(s) 24, 286, 370, 449, 690
Bsp143I GATC 4 cut(s) 97, 544, 559, 662
Bsp19I CCATGG 1 cut(s) 314
BspACI CCGC 2 cut(s) 379, 533
BspANI GGCC 3 cut(s) 22, 78, 587
BspCNI CTCAG 1 cut(s) 419
BspLI GGNNCC 3 cut(s) 22, 469, 483
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 1 cut(s) 670
BspQI GCTCTTC 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 382, 619
BsrI ACTGG 4 cut(s) 136, 454, 723, 742
BssECI CCNNGG 4 cut(s) 314, 413, 582, 712
BssMI GATC 4 cut(s) 97, 544, 559, 662
BssT1I CCWWGG 3 cut(s) 314, 582, 712
Bst2UI CCWGG 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 67, 197
BstC8I GCNNGC 2 cut(s) 66, 370
BstDEI CTNAG 2 cut(s) 406, 563
BstDSI CCRYGG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 100, 547, 562, 665
BstMAI GTCTC 2 cut(s) 144, 330
BstMBI GATC 4 cut(s) 97, 544, 559, 662
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 122, 413
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 2 cut(s) 24, 449
BstV1I GCAGC 3 cut(s) 139, 187, 331
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 1 cut(s) 97
BstXI CCANNNNNNTGG 1 cut(s) 186
BstYI RGATCY 1 cut(s) 97
BsuRI GGCC 3 cut(s) 22, 78, 587
BtgI CCRYGG 1 cut(s) 314
BtsCI GGATG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 66, 370
Cfr13I GGNCC 2 cut(s) 20, 21
Csp6I GTAC 5 cut(s) 56, 293, 410, 462, 482
CspCI CAANNNNNGTGG 2 cut(s) 474, 509
CviAII CATG 3 cut(s) 180, 315, 514
CviQI GTAC 5 cut(s) 56, 293, 410, 462, 482
DdeI CTNAG 2 cut(s) 406, 563
DpnI GATC 4 cut(s) 99, 546, 561, 664
DpnII GATC 4 cut(s) 97, 544, 559, 662
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 2 cut(s) 67, 197
EarI CTCTTC 2 cut(s) 67, 197
Ecl136II GAGCTC 2 cut(s) 284, 368
Eco130I CCWWGG 3 cut(s) 314, 582, 712
Eco24I GRGCYC 3 cut(s) 24, 286, 370
Eco53kI GAGCTC 2 cut(s) 284, 368
EcoICRI GAGCTC 2 cut(s) 284, 368
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 3 cut(s) 314, 582, 712
EcoT38I GRGCYC 3 cut(s) 24, 286, 370
ErhI CCWWGG 3 cut(s) 314, 582, 712
FaeI CATG 3 cut(s) 183, 318, 517
FatI CATG 3 cut(s) 179, 314, 513
Fnu4HI GCNGC 4 cut(s) 6, 128, 201, 320
FokI GGATG 1 cut(s) 216
FriOI GRGCYC 3 cut(s) 24, 286, 370
Fsp4HI GCNGC 4 cut(s) 6, 128, 201, 320
FspBI CTAG 4 cut(s) 65, 296, 347, 763
GluI GCNGC 4 cut(s) 6, 128, 201, 320
HaeIII GGCC 3 cut(s) 22, 78, 587
HapII CCGG 2 cut(s) 124, 702
Hin1II CATG 3 cut(s) 183, 318, 517
HindIII AAGCTT 2 cut(s) 500, 507
HpaII CCGG 2 cut(s) 124, 702
HphI GGTGA 4 cut(s) 26, 368, 508, 554
Hpy188I TCNGA 2 cut(s) 265, 553
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 2 cut(s) 162, 620
HpyCH4V TGCA 3 cut(s) 242, 572, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 2 cut(s) 406, 563
Hsp92II CATG 3 cut(s) 183, 318, 517
KpnI GGTACC 1 cut(s) 485
Kzo9I GATC 4 cut(s) 97, 544, 559, 662
LguI GCTCTTC 1 cut(s) 197
LmnI GCTCC 3 cut(s) 151, 365, 685
Lsp1109I GCAGC 3 cut(s) 139, 187, 331
LweI GCATC 2 cut(s) 258, 544
MaeI CTAG 4 cut(s) 65, 296, 347, 763
MaeIII GTNAC 3 cut(s) 374, 592, 730
MalI GATC 4 cut(s) 99, 546, 561, 664
MboI GATC 4 cut(s) 97, 544, 559, 662
MboII GAAGA 5 cut(s) 84, 147, 184, 343, 409
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 5 cut(s) 24, 286, 370, 449, 690
MlsI TGGCCA 1 cut(s) 587
MluCI AATT 7 cut(s) 105, 184, 218, 433, 486, 517, 604
MluNI TGGCCA 1 cut(s) 587
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 7 cut(s) 6, 68, 348, 398, 472, 560, 676
Mox20I TGGCCA 1 cut(s) 587
MscI TGGCCA 1 cut(s) 587
MseI TTAA 1 cut(s) 221
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 587
MspA1I CMGCKG 1 cut(s) 130
MspI CCGG 2 cut(s) 124, 702
MspR9I CCNGG 2 cut(s) 124, 415
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 1 cut(s) 378
NciI CCSGG 1 cut(s) 124
NcoI CCATGG 1 cut(s) 314
NdeII GATC 4 cut(s) 97, 544, 559, 662
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 183, 318, 517
NlaIV GGNNCC 3 cut(s) 22, 469, 483
NmuCI GTSAC 2 cut(s) 374, 592
PciSI GCTCTTC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PflMI CCANNNNNTGG 2 cut(s) 362, 718
PkrI GCNGC 4 cut(s) 7, 129, 202, 321
PshBI ATTAAT 1 cut(s) 221
Psp124BI GAGCTC 2 cut(s) 286, 370
Psp6I CCWGG 1 cut(s) 413
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 3 cut(s) 22, 469, 483
PspOMI GGGCCC 1 cut(s) 20
PspPI GGNCC 2 cut(s) 20, 21
PsuI RGATCY 1 cut(s) 97
PvuII CAGCTG 1 cut(s) 130
RsaI GTAC 5 cut(s) 57, 294, 411, 463, 483
RsaNI GTAC 5 cut(s) 56, 293, 410, 462, 482
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 2 cut(s) 286, 370
SapI GCTCTTC 1 cut(s) 197
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 4 cut(s) 6, 128, 201, 320
Sau3AI GATC 4 cut(s) 97, 544, 559, 662
Sau96I GGNCC 2 cut(s) 20, 21
ScrFI CCNGG 2 cut(s) 124, 415
SduI GDGCHC 5 cut(s) 24, 286, 370, 449, 690
SfaNI GCATC 2 cut(s) 258, 544
SfcI CTRYAG 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 726
SmoI CTYRAG 1 cut(s) 726
SpeI ACTAGT 2 cut(s) 295, 346
Sse9I AATT 7 cut(s) 105, 184, 218, 433, 486, 517, 604
SsiI CCGC 2 cut(s) 379, 533
SspMI CTAG 4 cut(s) 65, 296, 347, 763
SstI GAGCTC 2 cut(s) 286, 370
StyD4I CCNGG 2 cut(s) 122, 413
StyI CCWWGG 3 cut(s) 314, 582, 712
TaqI TCGA 4 cut(s) 70, 85, 170, 390
TasI AATT 7 cut(s) 105, 184, 218, 433, 486, 517, 604
TatI WGTACW 2 cut(s) 292, 461
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 2 cut(s) 374, 592
TseI GCWGC 4 cut(s) 5, 127, 200, 319
Tsp45I GTSAC 2 cut(s) 374, 592
TspDTI ATGAA 5 cut(s) 147, 184, 218, 441, 530
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 2 cut(s) 362, 718
VspI ATTAAT 1 cut(s) 221
XapI RAATTY 2 cut(s) 105, 604
XspI CTAG 4 cut(s) 65, 296, 347, 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.