RchiOBHm_Chr3g0485181

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014817
Physical Location & Seq
Forward (+)
31810901 .. 31811546
646 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44982

Sequence Viewer

Length: 600 bp
ATGATATATAGATATCGAAGTGGATTTAGTCTGGATGATAATGTGATAAAGGGGTCCAAGCATTTCTCTTATAGTTTTTTTTACTATACTACTATATCCTATTTTAGCATCTCTTTGGAAGGAATAGCAGATCTTATGCTTTCAGAAAGTGGCATGAACTGGTTTCTTAACTGGGAGACACCATATAATCCATGTGACAATTATGGATGTTTGAAAGGGTATGTACCAAAGTCAGATGACGAGTGGAGCAAAGGAAACTGGACAGGAGGATGTGTAAGGAAAACCAAATTTTTCTGTGATAGTGACACAAGCAAGTCAGTCTCAACGAGAACAAAAGAAAATGATGATGGGTTTTGGAAGATTATAAGGTTAAAAGTACCAGATTCTCATGAATTAGTTCTTACAACTTTGGATACTGAAAACACGCCTGATGACTGCAAGATATGGTGCCTGAATAATTGTTCTTGCCTCGCTTATGCATTTGTTAATAAAATAGGGTGTTTAGTCTGGTCCAAAGACCTTATTGACATACAACAGTTTTCCTTTGGAGGAGAAGATCTTTATGTTCGCCTAGCACAGGCAGAGCTCGGTAATTTATAA

Protein Analysis

199

Amino Acids

22.85

Weight (kDa)

4.94

Isoelectric Point (pI)

16.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 113 - 177 2.2e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 365, 598
AccB1I GGYRCC 1 cut(s) 447
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 2 cut(s) 225, 378
AfiI CCNNNNNNNGG 1 cut(s) 577
AgsI TTSAA 1 cut(s) 214
AluBI AGCT 1 cut(s) 586
AluI AGCT 1 cut(s) 586
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 2 cut(s) 170, 325
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 54, 510
AvaII GGWCC 2 cut(s) 54, 510
BanI GGYRCC 1 cut(s) 447
BanII GRGCYC 1 cut(s) 588
Bbv12I GWGCWC 1 cut(s) 588
BccI CCATC 1 cut(s) 341
BciVI GTATCC 1 cut(s) 406
BcoDI GTCTC 2 cut(s) 170, 325
BfaI CTAG 1 cut(s) 572
BfuI GTATCC 1 cut(s) 406
BglII AGATCT 2 cut(s) 130, 556
Bme18I GGWCC 2 cut(s) 54, 510
BmgT120I GGNCC 2 cut(s) 54, 510
BmiI GGNNCC 2 cut(s) 55, 449
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 1 cut(s) 577
Bse1I ACTGG 3 cut(s) 164, 176, 263
BseGI GGATG 3 cut(s) 40, 212, 275
BseLI CCNNNNNNNGG 1 cut(s) 577
BseNI ACTGG 3 cut(s) 164, 176, 263
BseRI GAGGAG 1 cut(s) 564
BshNI GGYRCC 1 cut(s) 447
BsiHKAI GWGCWC 1 cut(s) 588
BslI CCNNNNNNNGG 1 cut(s) 577
BsmAI GTCTC 2 cut(s) 170, 325
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 2 cut(s) 130, 556
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 55, 449
BspT107I GGYRCC 1 cut(s) 447
BsrI ACTGG 3 cut(s) 164, 176, 263
BssMI GATC 2 cut(s) 130, 556
Bst4CI ACNGT 1 cut(s) 537
BstENI CCTNNNNNAGG 1 cut(s) 575
BstF5I GGATG 3 cut(s) 40, 212, 275
BstKTI GATC 2 cut(s) 133, 559
BstMAI GTCTC 2 cut(s) 170, 325
BstMBI GATC 2 cut(s) 130, 556
BstX2I RGATCY 2 cut(s) 130, 556
BstYI RGATCY 2 cut(s) 130, 556
BsuI GTATCC 1 cut(s) 406
BtsCI GGATG 3 cut(s) 40, 212, 275
CciI TCATGA 1 cut(s) 388
Cfr13I GGNCC 2 cut(s) 54, 510
Csp6I GTAC 2 cut(s) 224, 377
CviAII CATG 3 cut(s) 154, 192, 389
CviJI RGCY 1 cut(s) 586
CviKI_1 RGCY 1 cut(s) 586
CviQI GTAC 2 cut(s) 224, 377
DpnI GATC 2 cut(s) 132, 558
DpnII GATC 2 cut(s) 130, 556
Ecl136II GAGCTC 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 588
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 54, 510
Eco53kI GAGCTC 1 cut(s) 586
EcoICRI GAGCTC 1 cut(s) 586
EcoNI CCTNNNNNAGG 1 cut(s) 575
EcoRV GATATC 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 588
FaeI CATG 3 cut(s) 157, 195, 392
FatI CATG 3 cut(s) 153, 191, 388
FokI GGATG 3 cut(s) 47, 219, 282
FriOI GRGCYC 1 cut(s) 588
FspBI CTAG 1 cut(s) 572
Hin1II CATG 3 cut(s) 157, 195, 392
HinfI GANTC 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 145, 235
Hpy188III TCNNGA 2 cut(s) 32, 389
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 537
HpyCH4V TGCA 2 cut(s) 438, 479
Hsp92II CATG 3 cut(s) 157, 195, 392
Kzo9I GATC 2 cut(s) 130, 556
LmnI GCTCC 1 cut(s) 246
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 572
MaeIII GTNAC 2 cut(s) 194, 302
MalI GATC 2 cut(s) 132, 558
MboI GATC 2 cut(s) 130, 556
MboII GAAGA 2 cut(s) 370, 566
MflI RGATCY 2 cut(s) 130, 556
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 5 cut(s) 199, 287, 392, 457, 592
MnlI CCTC 3 cut(s) 260, 479, 542
Mph1103I ATGCAT 1 cut(s) 481
MroXI GAANNNNTTC 1 cut(s) 396
MseI TTAA 3 cut(s) 168, 371, 486
NdeII GATC 2 cut(s) 130, 556
NlaIII CATG 3 cut(s) 157, 195, 392
NlaIV GGNNCC 2 cut(s) 55, 449
NmuCI GTSAC 2 cut(s) 194, 302
NsiI ATGCAT 1 cut(s) 481
PagI TCATGA 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 383
PsiI TTATAA 2 cut(s) 365, 598
Psp124BI GAGCTC 1 cut(s) 588
PspN4I GGNNCC 2 cut(s) 55, 449
PspPI GGNCC 2 cut(s) 54, 510
PsuI RGATCY 2 cut(s) 130, 556
RsaI GTAC 2 cut(s) 225, 378
RsaNI GTAC 2 cut(s) 224, 377
SacI GAGCTC 1 cut(s) 588
SaqAI TTAA 3 cut(s) 168, 371, 486
Sau3AI GATC 2 cut(s) 130, 556
Sau96I GGNCC 2 cut(s) 54, 510
SduI GDGCHC 1 cut(s) 588
SetI ASST 3 cut(s) 371, 522, 588
SfaNI GCATC 1 cut(s) 117
SinI GGWCC 2 cut(s) 54, 510
Sse9I AATT 5 cut(s) 199, 287, 392, 457, 592
SspMI CTAG 1 cut(s) 572
SstI GAGCTC 1 cut(s) 588
TaaI ACNGT 1 cut(s) 537
TaqI TCGA 1 cut(s) 16
TasI AATT 5 cut(s) 199, 287, 392, 457, 592
TfiI GAWTC 1 cut(s) 383
Tru1I TTAA 3 cut(s) 168, 371, 486
Tru9I TTAA 3 cut(s) 168, 371, 486
TseFI GTSAC 2 cut(s) 194, 302
Tsp45I GTSAC 2 cut(s) 194, 302
TspDTI ATGAA 2 cut(s) 170, 405
VpaK11BI GGWCC 2 cut(s) 54, 510
XagI CCTNNNNNAGG 1 cut(s) 575
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 1 cut(s) 572
Zsp2I ATGCAT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.