Rh1BG035300

PAN-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0014817
Physical Location & Seq
Reverse (-)
4769873 .. 4770585
713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG035300.1

Sequence Viewer

Length: 375 bp
ATGAAGATGGTAAGGGTAAAAGTACCAGACTTTCATGAATATGAGCCTTTGGAGGTGGAAGGCAAATCCGAGGACTGCAAGATAAAATGCCTACATAATTGTTCGTGTCTTGCTTATGCTTTTGTCGATAATATAGGTTGTTTGGTATGGTCCAAAGACCTTATTGATATACAGGAATTCCCCTCTGGTGGAGAAGATCTTTTTATCCGCCTAGCACCTCGAGGTAAAGAAAAACAAATAGAGTTAATTACCGGCCTTACAACTGTCTGTTTTTTCAGCATCTTGGTTGGCATATTGTGCGCTTTGCACAGGTTGCAAGCTAAACAAATTGGAAACATCAAAGCAACAACAAGGGGACTTGAATTGACTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

124

Amino Acids

13.89

Weight (kDa)

6.28

Isoelectric Point (pI)

45.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 2 - 57 1.9e-15 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 219
AciI CCGC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 176
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 1 cut(s) 188
AgsI TTSAA 1 cut(s) 362
AluBI AGCT 1 cut(s) 320
AluI AGCT 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 176
AspLEI GCGC 1 cut(s) 302
AspS9I GGNCC 1 cut(s) 150
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 150
BfaI CTAG 1 cut(s) 212
BglII AGATCT 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 150
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 150
BmsI GCATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 69
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse118I RCCGGY 1 cut(s) 251
BseDI CCNNGG 1 cut(s) 69
BseLI CCNNNNNNNGG 1 cut(s) 188
BshFI GGCC 1 cut(s) 255
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 1 cut(s) 252
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 255
BsoBI CYCGRG 1 cut(s) 219
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 1 cut(s) 208
BspANI GGCC 1 cut(s) 255
BspHI TCATGA 1 cut(s) 34
BsrFI RCCGGY 1 cut(s) 251
BssAI RCCGGY 1 cut(s) 251
BssECI CCNNGG 1 cut(s) 69
BssMI GATC 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 265
BstAPI GCANNNNNTGC 2 cut(s) 297, 313
BstC8I GCNNGC 1 cut(s) 318
BstHHI GCGC 1 cut(s) 302
BstKTI GATC 1 cut(s) 199
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 297, 313
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BsuRI GGCC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 318
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 302
Cfr10I RCCGGY 1 cut(s) 251
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 23
CviAII CATG 1 cut(s) 35
CviJI RGCY 3 cut(s) 46, 255, 320
CviKI_1 RGCY 3 cut(s) 46, 255, 320
CviQI GTAC 1 cut(s) 23
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EciI GGCGGA 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 219
EcoRI GAATTC 1 cut(s) 176
FaeI CATG 1 cut(s) 38
FaiI YATR 9 cut(s) 36, 42, 96, 117, 134, 148, 170, 293, 373
FaqI GGGAC 1 cut(s) 369
FatI CATG 1 cut(s) 34
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 301
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 252
HhaI GCGC 1 cut(s) 302
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 300
HinP1I GCGC 1 cut(s) 300
HpaII CCGG 1 cut(s) 252
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 35
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 4 cut(s) 78, 307, 316, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 313
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 300
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 39, 158, 171, 265, 295
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 212
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 16, 206
MflI RGATCY 1 cut(s) 196
MluCI AATT 5 cut(s) 97, 176, 246, 327, 362
MnlI CCTC 5 cut(s) 46, 64, 193, 215, 228
MseI TTAA 1 cut(s) 245
MslI CAYNNNNRTG 1 cut(s) 39
MspI CCGG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 297, 313
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 38
PaeR7I CTCGAG 1 cut(s) 219
PagI TCATGA 1 cut(s) 34
PspPI GGNCC 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 219
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 245
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 150
SetI ASST 7 cut(s) 57, 139, 162, 220, 226, 314, 322
SfaNI GCATC 1 cut(s) 288
Sfr274I CTCGAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 150
SlaI CTCGAG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 219
SmoI CTYRAG 1 cut(s) 219
Sse9I AATT 5 cut(s) 97, 176, 246, 327, 362
SsiI CCGC 1 cut(s) 208
SspMI CTAG 1 cut(s) 212
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 126, 220
TasI AATT 5 cut(s) 97, 176, 246, 327, 362
Tru1I TTAA 1 cut(s) 245
Tru9I TTAA 1 cut(s) 245
TspDTI ATGAA 3 cut(s) 17, 23, 51
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 1 cut(s) 176
XhoI CTCGAG 1 cut(s) 219
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.